Prupe.4G055800_v2.0.a1

Belongs to the 'GDSL' lipolytic enzyme family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0016036
Physical Location & Seq
Reverse (-)
2677594 .. 2679479
1886 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G055800.1

Sequence Viewer

Length: 1104 bp
ATGCGTCAAACTTGGCCAATAATGGTGGAGAAGAAGGGGACACTTGTGATCGTGGAATTGGCTTTGCTGCTGCTGCTGCCTTTGCTCTCGGGAGCTCTTGACATTGTTAAAGCGAGGGAAATTGCTGCTCGCTACAATGTGACATGTATCTTGGTCTTTGGAGATTCAAGTGTTGATTCTGGCAACAACAATTTTATAGTGACCACCATAAAGAGCAATTTCCTTCCTTATGGCAAAGACTTCTTCAATGGCCGCCCAACTGGAAGGTTCAGCAATGGAAGGCTTGCCACAGATTTCATTGCGGATGCTATTGGCTACACAAAAACAATCCCACCATTTCTTGACCCCAATCTGAAGCTGGAAGATCTGCCTCATGGTGCTAGTTTTGCATCAGCTGCTTCGGGTTACGATGATTTCACCGCTAATATTTCGAGTGTTCTATCTCTTCCCCGCCAGCTGGAGTATTTGATGCATTATAAAGTCAAACTAAGAAAACTGGTTGGTCAGAAGAGAGCTGAGGATATCATTAGAACTGCCCTCTTCGTCATGAGTATGGGCACAAATGACTTTCTCCAAGACTACTACTTGGACCCAACTCGCCCCAAGCAATTCACTGTGGAAGAGTATCAAAATTACTTGGTCTCTTGCATGGCTAATGCCATTCAGAAAATGCAAAGGCTAGGAGGCACAAGATTGGTTGTTGTTGGGGTCCCTCCTTTGGGATGCATGCCACTTGTCAAAACGATAATGGACGTGACGACATGTGCCGAAAATTACAACAAAGTGGCATTCTCATTGAATTCCAAGATACAAGAGAAATTGGAGACCATAAGCGCAACATCTAGAATGGAAACTGCCTTTGTTGATGCTTATGGTATTATCCAAAATGCCATAAACAACCCAGCATTGTACGGTTTGTCTGAGACTTCAAAAGGGTGTTGCGGGACTGGAACCATAGAGTTTGGAGATTCATGCAGGGGCTTAGAGACATGCACTGATCCAGAAAAATATGTATTCTGGGATGCTGTTCATCCAACAGAAAAAATGTATAAAATCCTTGCTGAGGAGGCTATCAAAGCTCTGGCTCAAAAGCTCCTTGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lipase_GDSL

Protein Analysis

368

Amino Acids

40.66

Weight (kDa)

6.83

Isoelectric Point (pI)

30.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016036)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G45950
fragaria_vesca FvH4_7g02060
malus_domestica MD10G1286100.v1.1
prunus_persica Prupe.4G055800_v2.0.a1
pyrus_communis pycom10g23880
rosa_laevigata RLG00000031700
rosa_roxburghii Rroxscaffold_1G00066400 Rroxscaffold_6G00404910
rosa_rugosa Rorug04G0445700 Rorug04G0445800
rosa_samantha Rh5AG077300 Rh5BG072400 Rh5CG084800 Rh5DG072900
rosa_wichuraiana Rw5G007120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 477
AciI CCGC 5 cut(s) 253, 302, 420, 451, 942
AclWI GGATC 1 cut(s) 992
AcoI YGGCCR 2 cut(s) 14, 250
AcsI RAATTY 1 cut(s) 799
AcuI CTGAAG 1 cut(s) 374
AfaI GTAC 1 cut(s) 911
AfiI CCNNNNNNNGG 4 cut(s) 457, 718, 719, 1063
AflIII ACRYGT 2 cut(s) 143, 761
AgsI TTSAA 4 cut(s) 168, 247, 799, 930
AjiI CACGTC 1 cut(s) 754
AluBI AGCT 7 cut(s) 95, 358, 395, 457, 515, 1079, 1093
AluI AGCT 7 cut(s) 95, 358, 395, 457, 515, 1079, 1093
Alw21I GWGCWC 1 cut(s) 97
Alw26I GTCTC 4 cut(s) 646, 818, 917, 980
AlwI GGATC 1 cut(s) 992
Ama87I CYCGRG 1 cut(s) 88
AoxI GGCC 2 cut(s) 14, 250
ApeKI GCWGC 6 cut(s) 67, 70, 73, 76, 125, 395
ApoI RAATTY 1 cut(s) 799
AspLEI GCGC 1 cut(s) 836
AspS9I GGNCC 2 cut(s) 589, 709
AsuHPI GGTGA 1 cut(s) 409
AvaI CYCGRG 1 cut(s) 88
AvaII GGWCC 2 cut(s) 589, 709
BaeGI GKGCMC 1 cut(s) 560
BalI TGGCCA 1 cut(s) 16
BanII GRGCYC 1 cut(s) 97
Bbv12I GWGCWC 1 cut(s) 97
BbvCI CCTCAGC 2 cut(s) 516, 1062
BbvI GCAGC 6 cut(s) 54, 57, 60, 63, 112, 382
BcoDI GTCTC 4 cut(s) 646, 818, 917, 980
BfaI CTAG 3 cut(s) 381, 680, 843
BglII AGATCT 1 cut(s) 364
BisI GCNGC 7 cut(s) 68, 71, 74, 77, 126, 253, 396
BlsI GCNGC 7 cut(s) 69, 72, 75, 78, 127, 254, 397
Bme18I GGWCC 2 cut(s) 589, 709
BmeT110I CYCGRG 1 cut(s) 88
BmgBI CACGTC 1 cut(s) 754
BmgT120I GGNCC 2 cut(s) 589, 709
BmiI GGNNCC 4 cut(s) 591, 710, 711, 952
BmsI GCATC 6 cut(s) 295, 398, 459, 713, 856, 1012
BpmI CTGGAG 1 cut(s) 479
Bpu10I CCTNAGC 2 cut(s) 516, 1062
BsaI GGTCTC 2 cut(s) 646, 818
Bsc4I CCNNNNNNNGG 4 cut(s) 457, 718, 719, 1063
Bse1I ACTGG 3 cut(s) 265, 501, 952
Bse3DI GCAATG 2 cut(s) 280, 297
BseGI GGATG 4 cut(s) 310, 728, 1027, 1030
BseLI CCNNNNNNNGG 4 cut(s) 457, 718, 719, 1063
BseMI GCAATG 2 cut(s) 280, 297
BseMII CTCAG 3 cut(s) 507, 912, 1053
BseNI ACTGG 3 cut(s) 265, 501, 952
BseRI GAGGAG 1 cut(s) 1079
BseSI GKGCMC 1 cut(s) 560
BseXI GCAGC 6 cut(s) 54, 57, 60, 63, 112, 382
BseYI CCCAGC 1 cut(s) 901
BshFI GGCC 2 cut(s) 16, 252
BsiHKAI GWGCWC 1 cut(s) 97
BsiHKCI CYCGRG 1 cut(s) 88
BslFI GGGAC 3 cut(s) 52, 695, 958
BslI CCNNNNNNNGG 4 cut(s) 457, 718, 719, 1063
BsmAI GTCTC 4 cut(s) 646, 818, 917, 980
BsmFI GGGAC 3 cut(s) 52, 695, 958
BsmI GAATGC 1 cut(s) 788
BsnI GGCC 2 cut(s) 16, 252
Bso31I GGTCTC 2 cut(s) 646, 818
BsoBI CYCGRG 1 cut(s) 88
Bsp1286I GDGCHC 2 cut(s) 97, 560
Bsp143I GATC 3 cut(s) 48, 364, 997
BspACI CCGC 5 cut(s) 253, 302, 420, 451, 942
BspANI GGCC 2 cut(s) 16, 252
BspCNI CTCAG 3 cut(s) 508, 913, 1054
BspHI TCATGA 1 cut(s) 546
BspLI GGNNCC 4 cut(s) 591, 710, 711, 952
BspPI GGATC 1 cut(s) 992
BspTNI GGTCTC 2 cut(s) 646, 818
BsrDI GCAATG 2 cut(s) 280, 297
BsrI ACTGG 3 cut(s) 265, 501, 952
BssMI GATC 3 cut(s) 48, 364, 997
Bst4CI ACNGT 2 cut(s) 616, 914
Bst6I CTCTTC 4 cut(s) 450, 503, 545, 615
BstAPI GCANNNNNTGC 1 cut(s) 395
BstC8I GCNNGC 4 cut(s) 130, 285, 455, 728
BstDEI CTNAG 5 cut(s) 488, 516, 921, 982, 1062
BstENI CCTNNNNNAGG 1 cut(s) 1061
BstF5I GGATG 4 cut(s) 310, 728, 1027, 1030
BstHHI GCGC 1 cut(s) 836
BstKTI GATC 3 cut(s) 51, 367, 1000
BstMAI GTCTC 4 cut(s) 646, 818, 917, 980
BstMBI GATC 3 cut(s) 48, 364, 997
BstMWI GCNNNNNNNGC 7 cut(s) 73, 76, 82, 386, 395, 1067, 1076
BstNSI RCATGY 4 cut(s) 147, 730, 765, 993
BstSLI GKGCMC 1 cut(s) 560
BstV1I GCAGC 6 cut(s) 54, 57, 60, 63, 112, 382
BstX2I RGATCY 1 cut(s) 364
BstYI RGATCY 1 cut(s) 364
BsuRI GGCC 2 cut(s) 16, 252
BtrI CACGTC 1 cut(s) 754
BtsCI GGATG 4 cut(s) 310, 728, 1027, 1030
BtsIMutI CAGTG 2 cut(s) 612, 993
Cac8I GCNNGC 4 cut(s) 130, 285, 455, 728
CciI TCATGA 1 cut(s) 546
CfoI GCGC 1 cut(s) 836
Cfr13I GGNCC 2 cut(s) 589, 709
Csp6I GTAC 1 cut(s) 910
CspCI CAANNNNNGTGG 2 cut(s) 6, 41
CviAII CATG 8 cut(s) 144, 374, 547, 649, 727, 762, 972, 990
CviQI GTAC 1 cut(s) 910
DdeI CTNAG 5 cut(s) 488, 516, 921, 982, 1062
DpnI GATC 3 cut(s) 50, 366, 999
DpnII GATC 3 cut(s) 48, 364, 997
EaeI YGGCCR 2 cut(s) 14, 250
Eam1104I CTCTTC 4 cut(s) 450, 503, 545, 615
EarI CTCTTC 4 cut(s) 450, 503, 545, 615
Ecl136II GAGCTC 1 cut(s) 95
Eco24I GRGCYC 1 cut(s) 97
Eco31I GGTCTC 2 cut(s) 646, 818
Eco32I GATATC 1 cut(s) 523
Eco47I GGWCC 2 cut(s) 589, 709
Eco53kI GAGCTC 1 cut(s) 95
Eco57I CTGAAG 1 cut(s) 374
Eco88I CYCGRG 1 cut(s) 88
EcoICRI GAGCTC 1 cut(s) 95
EcoNI CCTNNNNNAGG 1 cut(s) 1061
EcoO109I RGGNCCY 1 cut(s) 709
EcoRI GAATTC 1 cut(s) 799
EcoRV GATATC 1 cut(s) 523
EcoT22I ATGCAT 2 cut(s) 474, 728
EcoT38I GRGCYC 1 cut(s) 97
FaeI CATG 8 cut(s) 147, 377, 550, 652, 730, 765, 975, 993
FaqI GGGAC 3 cut(s) 52, 695, 958
FatI CATG 8 cut(s) 143, 373, 546, 648, 726, 761, 971, 989
FauI CCCGC 2 cut(s) 458, 935
Fnu4HI GCNGC 7 cut(s) 68, 71, 74, 77, 126, 253, 396
FokI GGATG 4 cut(s) 317, 735, 1017, 1034
FriOI GRGCYC 1 cut(s) 97
Fsp4HI GCNGC 7 cut(s) 68, 71, 74, 77, 126, 253, 396
FspBI CTAG 3 cut(s) 381, 680, 843
GlaI GCGC 1 cut(s) 835
GluI GCNGC 7 cut(s) 68, 71, 74, 77, 126, 253, 396
GsaI CCCAGC 1 cut(s) 905
GsuI CTGGAG 1 cut(s) 479
HaeIII GGCC 2 cut(s) 16, 252
HhaI GCGC 1 cut(s) 836
Hin1II CATG 8 cut(s) 147, 377, 550, 652, 730, 765, 975, 993
Hin6I GCGC 1 cut(s) 834
HinP1I GCGC 1 cut(s) 834
HinfI GANTC 3 cut(s) 164, 176, 968
HphI GGTGA 1 cut(s) 409
Hpy188I TCNGA 5 cut(s) 354, 507, 666, 922, 1103
Hpy188III TCNNGA 6 cut(s) 90, 98, 341, 547, 843, 1001
HpyAV CCTTC 4 cut(s) 28, 233, 258, 273
HpyCH4III ACNGT 2 cut(s) 616, 914
HpyCH4IV ACGT 1 cut(s) 753
HpyCH4V TGCA 7 cut(s) 389, 472, 648, 673, 726, 975, 993
HpyF10VI GCNNNNNNNGC 7 cut(s) 73, 76, 82, 386, 395, 1067, 1076
HpyF3I CTNAG 5 cut(s) 488, 516, 921, 982, 1062
HpySE526I ACGT 1 cut(s) 753
Hsp92II CATG 8 cut(s) 147, 377, 550, 652, 730, 765, 975, 993
HspAI GCGC 1 cut(s) 834
KflI GGGWCCC 1 cut(s) 709
Kzo9I GATC 3 cut(s) 48, 364, 997
LmnI GCTCC 2 cut(s) 92, 1098
Lsp1109I GCAGC 6 cut(s) 54, 57, 60, 63, 112, 382
LweI GCATC 6 cut(s) 295, 398, 459, 713, 856, 1012
MaeI CTAG 3 cut(s) 381, 680, 843
MaeII ACGT 1 cut(s) 753
MaeIII GTNAC 4 cut(s) 139, 199, 404, 754
MalI GATC 3 cut(s) 50, 366, 999
MboI GATC 3 cut(s) 48, 364, 997
MboII GAAGA 7 cut(s) 43, 235, 374, 437, 520, 532, 632
MflI RGATCY 1 cut(s) 364
MhlI GDGCHC 2 cut(s) 97, 560
MlsI TGGCCA 1 cut(s) 16
MluCI AATT 9 cut(s) 56, 120, 190, 217, 608, 631, 772, 799, 818
MluNI TGGCCA 1 cut(s) 16
MmeI TCCRAC 1 cut(s) 1058
MnlI CCTC 8 cut(s) 108, 381, 511, 548, 677, 723, 1057, 1060
Mox20I TGGCCA 1 cut(s) 16
Mph1103I ATGCAT 2 cut(s) 474, 728
MscI TGGCCA 1 cut(s) 16
MseI TTAA 1 cut(s) 108
MslI CAYNNNNRTG 1 cut(s) 551
Msp20I TGGCCA 1 cut(s) 16
MspA1I CMGCKG 2 cut(s) 395, 457
Mva1269I GAATGC 1 cut(s) 788
MwoI GCNNNNNNNGC 7 cut(s) 73, 76, 82, 386, 395, 1067, 1076
NdeII GATC 3 cut(s) 48, 364, 997
NlaIII CATG 8 cut(s) 147, 377, 550, 652, 730, 765, 975, 993
NlaIV GGNNCC 4 cut(s) 591, 710, 711, 952
NmuCI GTSAC 3 cut(s) 139, 199, 754
NsiI ATGCAT 2 cut(s) 474, 728
NspI RCATGY 4 cut(s) 147, 730, 765, 993
PaeI GCATGC 1 cut(s) 730
PagI TCATGA 1 cut(s) 546
PciI ACATGT 2 cut(s) 143, 761
PctI GAATGC 1 cut(s) 788
PfeI GAWTC 3 cut(s) 164, 176, 968
PkrI GCNGC 7 cut(s) 69, 72, 75, 78, 127, 254, 397
PpuMI RGGWCCY 1 cut(s) 709
PscI ACATGT 2 cut(s) 143, 761
PsiI TTATAA 1 cut(s) 477
Psp124BI GAGCTC 1 cut(s) 97
Psp5II RGGWCCY 1 cut(s) 709
PspFI CCCAGC 1 cut(s) 901
PspN4I GGNNCC 4 cut(s) 591, 710, 711, 952
PspPI GGNCC 2 cut(s) 589, 709
PspPPI RGGWCCY 1 cut(s) 709
PsuI RGATCY 1 cut(s) 364
PvuII CAGCTG 2 cut(s) 395, 457
RsaI GTAC 1 cut(s) 911
RsaNI GTAC 1 cut(s) 910
RseI CAYNNNNRTG 1 cut(s) 551
SacI GAGCTC 1 cut(s) 97
SaqAI TTAA 1 cut(s) 108
SatI GCNGC 7 cut(s) 68, 71, 74, 77, 126, 253, 396
Sau3AI GATC 3 cut(s) 48, 364, 997
Sau96I GGNCC 2 cut(s) 589, 709
SduI GDGCHC 2 cut(s) 97, 560
SetI ASST 9 cut(s) 97, 269, 360, 397, 459, 517, 756, 1081, 1095
SfaNI GCATC 6 cut(s) 295, 398, 459, 713, 856, 1012
SinI GGWCC 2 cut(s) 589, 709
SmiMI CAYNNNNRTG 1 cut(s) 551
SphI GCATGC 1 cut(s) 730
Sse9I AATT 9 cut(s) 56, 120, 190, 217, 608, 631, 772, 799, 818
SsiI CCGC 5 cut(s) 253, 302, 420, 451, 942
SspI AATATT 1 cut(s) 427
SspMI CTAG 3 cut(s) 381, 680, 843
SstI GAGCTC 1 cut(s) 97
TaaI ACNGT 2 cut(s) 616, 914
TaiI ACGT 1 cut(s) 756
TaqI TCGA 1 cut(s) 431
TasI AATT 9 cut(s) 56, 120, 190, 217, 608, 631, 772, 799, 818
TauI GCSGC 1 cut(s) 255
TfiI GAWTC 3 cut(s) 164, 176, 968
Tru1I TTAA 1 cut(s) 108
Tru9I TTAA 1 cut(s) 108
TscAI CASTG 2 cut(s) 619, 1000
TseFI GTSAC 3 cut(s) 139, 199, 754
TseI GCWGC 6 cut(s) 67, 70, 73, 76, 125, 395
Tsp45I GTSAC 3 cut(s) 139, 199, 754
TspDTI ATGAA 3 cut(s) 286, 960, 1019
TspRI CASTG 2 cut(s) 619, 1000
VpaK11BI GGWCC 2 cut(s) 589, 709
XagI CCTNNNNNAGG 1 cut(s) 1061
XapI RAATTY 1 cut(s) 799
XbaI TCTAGA 1 cut(s) 842
XceI RCATGY 4 cut(s) 147, 730, 765, 993
XcmI CCANNNNNNNNNTGG 1 cut(s) 355
XspI CTAG 3 cut(s) 381, 680, 843
Zsp2I ATGCAT 2 cut(s) 474, 728
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.