Rroxscaffold_6G00404910

Belongs to the 'GDSL' lipolytic enzyme family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0016036
Physical Location & Seq
Forward (+)
27399515 .. 27402996
3482 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00404910.1

Sequence Viewer

Length: 453 bp
ATGAGTATGGGAACAAATGACTTTATCCAAAACTACTACTTGGAACCAACTCGCTCAAAGCAGTTCACTGTGAAACAGTGTCAAAATTACTTGGCAATGCATAGGCTAGGAAGCAAAAGATTGGCTGTTGTTGGAGTTCCACCATTGAGGTGCATGCCACTTGTCAGAACACTAATGGGCGAGACCAAATGTGTGGAAATTTATAATAAAGTGCCGTTCACTTTTAATTCCAAGATTCAAAAGAAAGTAAAGAAAATTACCAAAACATCTGGAATGGATATTGCGTTTGTTGATGCTCATGAGTTTGGAGAATCATACAGAGGATTAAAAACATGCACTGATCCAGCAAAGCATGTATTCTGGGATGCTGTTGATACGAAATCGTTGCTGAGAAAGCTTTGCAAACTCTTGATGGCATGGAAAACTCTCAGTCGAGGGATTTGGTTGGGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lipase_GDSL

Protein Analysis

150

Amino Acids

17.21

Weight (kDa)

9.81

Isoelectric Point (pI)

34.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lipase_GDSL PF00657 2 - 123 5.9e-09 GDSL-like Lipase/Acylhydrolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016036)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G45950
fragaria_vesca FvH4_7g02060
malus_domestica MD10G1286100.v1.1
prunus_persica Prupe.4G055800_v2.0.a1
pyrus_communis pycom10g23880
rosa_laevigata RLG00000031700
rosa_roxburghii Rroxscaffold_1G00066400 Rroxscaffold_6G00404910
rosa_rugosa Rorug04G0445700 Rorug04G0445800
rosa_samantha Rh5AG077300 Rh5BG072400 Rh5CG084800 Rh5DG072900
rosa_wichuraiana Rw5G007120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 204
AclWI GGATC 1 cut(s) 335
AcsI RAATTY 1 cut(s) 198
AgsI TTSAA 1 cut(s) 239
AluBI AGCT 1 cut(s) 397
AluI AGCT 1 cut(s) 397
Alw26I GTCTC 1 cut(s) 176
AlwI GGATC 1 cut(s) 335
ApoI RAATTY 1 cut(s) 198
BccI CCATC 1 cut(s) 406
BceAI ACGGC 1 cut(s) 199
BcgI CGANNNNNNTGC 2 cut(s) 367, 401
BcoDI GTCTC 1 cut(s) 176
BfaI CTAG 1 cut(s) 107
BmiI GGNNCC 1 cut(s) 45
BmsI GCATC 2 cut(s) 283, 355
BsaI GGTCTC 1 cut(s) 176
Bse3DI GCAATG 1 cut(s) 102
BseGI GGATG 1 cut(s) 370
BseMI GCAATG 1 cut(s) 102
BseMII CTCAG 2 cut(s) 380, 442
BsmAI GTCTC 1 cut(s) 176
Bso31I GGTCTC 1 cut(s) 176
Bsp143I GATC 1 cut(s) 340
BspCNI CTCAG 2 cut(s) 381, 441
BspHI TCATGA 1 cut(s) 298
BspLI GGNNCC 1 cut(s) 45
BspPI GGATC 1 cut(s) 335
BspTNI GGTCTC 1 cut(s) 176
BsrDI GCAATG 1 cut(s) 102
BssMI GATC 1 cut(s) 340
Bst4CI ACNGT 2 cut(s) 70, 78
BstC8I GCNNGC 1 cut(s) 155
BstDEI CTNAG 2 cut(s) 389, 428
BstF5I GGATG 1 cut(s) 370
BstKTI GATC 1 cut(s) 343
BstMAI GTCTC 1 cut(s) 176
BstMBI GATC 1 cut(s) 340
BstMWI GCNNNNNNNGC 1 cut(s) 394
BstNSI RCATGY 3 cut(s) 157, 336, 356
BstXI CCANNNNNNTGG 1 cut(s) 193
BtsCI GGATG 1 cut(s) 370
BtsIMutI CAGTG 3 cut(s) 66, 83, 336
Cac8I GCNNGC 1 cut(s) 155
CciI TCATGA 1 cut(s) 298
CviAII CATG 5 cut(s) 154, 299, 333, 353, 417
CviJI RGCY 3 cut(s) 106, 125, 397
CviKI_1 RGCY 3 cut(s) 106, 125, 397
DdeI CTNAG 2 cut(s) 389, 428
DpnI GATC 1 cut(s) 342
DpnII GATC 1 cut(s) 340
Eco31I GGTCTC 1 cut(s) 176
EcoT22I ATGCAT 1 cut(s) 102
FaeI CATG 5 cut(s) 157, 302, 336, 356, 420
FaiI YATR 9 cut(s) 8, 102, 155, 204, 300, 316, 334, 354, 418
FatI CATG 5 cut(s) 153, 298, 332, 352, 416
FokI GGATG 1 cut(s) 377
FspBI CTAG 1 cut(s) 107
Hin1II CATG 5 cut(s) 157, 302, 336, 356, 420
HindIII AAGCTT 1 cut(s) 395
HinfI GANTC 2 cut(s) 235, 311
Hpy166II GTNNAC 2 cut(s) 66, 219
Hpy188I TCNGA 1 cut(s) 167
Hpy188III TCNNGA 3 cut(s) 270, 299, 409
Hpy8I GTNNAC 2 cut(s) 66, 219
HpyCH4III ACNGT 2 cut(s) 70, 78
HpyCH4V TGCA 4 cut(s) 100, 153, 336, 402
HpyF10VI GCNNNNNNNGC 1 cut(s) 394
HpyF3I CTNAG 2 cut(s) 389, 428
Hsp92II CATG 5 cut(s) 157, 302, 336, 356, 420
Kzo9I GATC 1 cut(s) 340
LpnPI CCDG 3 cut(s) 255, 346, 357
LweI GCATC 2 cut(s) 283, 355
MaeI CTAG 1 cut(s) 107
MalI GATC 1 cut(s) 342
MboI GATC 1 cut(s) 340
MluCI AATT 4 cut(s) 85, 198, 226, 255
MmeI TCCRAC 1 cut(s) 112
MnlI CCTC 3 cut(s) 141, 314, 428
Mph1103I ATGCAT 1 cut(s) 102
MseI TTAA 2 cut(s) 225, 326
MslI CAYNNNNRTG 1 cut(s) 148
MwoI GCNNNNNNNGC 1 cut(s) 394
NdeII GATC 1 cut(s) 340
NlaIII CATG 5 cut(s) 157, 302, 336, 356, 420
NlaIV GGNNCC 1 cut(s) 45
NsiI ATGCAT 1 cut(s) 102
NspI RCATGY 3 cut(s) 157, 336, 356
PaeI GCATGC 1 cut(s) 157
PagI TCATGA 1 cut(s) 298
PfeI GAWTC 2 cut(s) 235, 311
PsiI TTATAA 1 cut(s) 204
PspN4I GGNNCC 1 cut(s) 45
RseI CAYNNNNRTG 1 cut(s) 148
SaqAI TTAA 2 cut(s) 225, 326
Sau3AI GATC 1 cut(s) 340
SetI ASST 2 cut(s) 152, 399
SfaNI GCATC 2 cut(s) 283, 355
SmiMI CAYNNNNRTG 1 cut(s) 148
SphI GCATGC 1 cut(s) 157
Sse9I AATT 4 cut(s) 85, 198, 226, 255
SspMI CTAG 1 cut(s) 107
TaaI ACNGT 2 cut(s) 70, 78
TaqI TCGA 1 cut(s) 433
TasI AATT 4 cut(s) 85, 198, 226, 255
TfiI GAWTC 2 cut(s) 235, 311
Tru1I TTAA 2 cut(s) 225, 326
Tru9I TTAA 2 cut(s) 225, 326
TscAI CASTG 3 cut(s) 73, 83, 343
TspRI CASTG 3 cut(s) 73, 83, 343
XapI RAATTY 1 cut(s) 198
XceI RCATGY 3 cut(s) 157, 336, 356
XspI CTAG 1 cut(s) 107
Zsp2I ATGCAT 1 cut(s) 102
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.