Rh5CG084800

Belongs to the 'GDSL' lipolytic enzyme family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0016036
Physical Location & Seq
Reverse (-)
6625978 .. 6634297
8320 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG084800.1

Sequence Viewer

Length: 576 bp
ATGCCTTATTTGTTACGAGTATGGGAACAAATGACTTTATCCAAAACTACTAGCTACTTGGAACCAACTCGCTCCAAGCAGTTCACTGTGGAACAGTATCAAAATTATTTGGTCTCTTGCATGGCTCATTCCATTCAGGCAATGCATAGGCTAGGAGGCACAAGATTGGCTGTTGTTGGAGTTCCACCATTGGGGTGCATGCCACTTGTCAAAACGCTTATGGGAGAGACCAAATGTGTGGAAAATTATAACAAAGTGTCATTCTCTTTTAATTCCAAGATTCAAAAGAAATTAGAGAACATTACGAAAACATCTGGAATGAAGATTGCCTTTGTTGATGCTTATGGTATTGTCGAAAGTGCCATAAATAACCCACAGTTATATGGTCTAACTGAAACTTCAAAAGGGTGTTGTGGGACTGGAACTATAGAGTTTGGAGAATCATGCAGAGGATTAAAAACATGCACTGATCCAGCAAAGTATGTATTCTGGGATGCTGTTCATCCAACAGAGAAAATGTACGAAATCGTTGCTGGGAAAGCTTTGCAAACTCTTGATGGAAAACTCTCTGTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lipase_GDSL

Protein Analysis

191

Amino Acids

21.2

Weight (kDa)

8.78

Isoelectric Point (pI)

41.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lipase_GDSL PF00657 29 - 178 1.4e-16 GDSL-like Lipase/Acylhydrolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016036)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G45950
fragaria_vesca FvH4_7g02060
malus_domestica MD10G1286100.v1.1
prunus_persica Prupe.4G055800_v2.0.a1
pyrus_communis pycom10g23880
rosa_laevigata RLG00000031700
rosa_roxburghii Rroxscaffold_1G00066400 Rroxscaffold_6G00404910
rosa_rugosa Rorug04G0445700 Rorug04G0445800
rosa_samantha Rh5AG077300 Rh5BG072400 Rh5CG084800 Rh5DG072900
rosa_wichuraiana Rw5G007120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 249
AclWI GGATC 1 cut(s) 464
AfaI GTAC 1 cut(s) 521
AfiI CCNNNNNNNGG 1 cut(s) 191
AgsI TTSAA 2 cut(s) 284, 402
AluBI AGCT 2 cut(s) 54, 542
AluI AGCT 2 cut(s) 54, 542
Alw26I GTCTC 2 cut(s) 118, 221
AlwI GGATC 1 cut(s) 464
BccI CCATC 1 cut(s) 551
BcgI CGANNNNNNTGC 2 cut(s) 512, 546
BcoDI GTCTC 2 cut(s) 118, 221
BfaI CTAG 3 cut(s) 51, 152, 574
BfmI CTRYAG 1 cut(s) 426
BmiI GGNNCC 1 cut(s) 63
BmsI GCATC 2 cut(s) 328, 484
BsaI GGTCTC 2 cut(s) 118, 221
Bsc4I CCNNNNNNNGG 1 cut(s) 191
Bse1I ACTGG 1 cut(s) 424
Bse3DI GCAATG 1 cut(s) 147
BseGI GGATG 2 cut(s) 499, 502
BseLI CCNNNNNNNGG 1 cut(s) 191
BseMI GCAATG 1 cut(s) 147
BseNI ACTGG 1 cut(s) 424
BseYI CCCAGC 1 cut(s) 533
BslFI GGGAC 1 cut(s) 430
BslI CCNNNNNNNGG 1 cut(s) 191
BsmAI GTCTC 2 cut(s) 118, 221
BsmFI GGGAC 1 cut(s) 430
Bso31I GGTCTC 2 cut(s) 118, 221
Bsp143I GATC 1 cut(s) 469
BspLI GGNNCC 1 cut(s) 63
BspPI GGATC 1 cut(s) 464
BspTNI GGTCTC 2 cut(s) 118, 221
BsrDI GCAATG 1 cut(s) 147
BsrI ACTGG 1 cut(s) 424
BssMI GATC 1 cut(s) 469
Bst4CI ACNGT 3 cut(s) 88, 96, 378
BstC8I GCNNGC 1 cut(s) 200
BstF5I GGATG 2 cut(s) 499, 502
BstKTI GATC 1 cut(s) 472
BstMAI GTCTC 2 cut(s) 118, 221
BstMBI GATC 1 cut(s) 469
BstMWI GCNNNNNNNGC 1 cut(s) 539
BstNSI RCATGY 2 cut(s) 202, 465
BstSFI CTRYAG 1 cut(s) 426
BstXI CCANNNNNNTGG 1 cut(s) 238
BtsCI GGATG 2 cut(s) 499, 502
BtsIMutI CAGTG 2 cut(s) 84, 465
Cac8I GCNNGC 1 cut(s) 200
Csp6I GTAC 1 cut(s) 520
CviAII CATG 4 cut(s) 121, 199, 444, 462
CviJI RGCY 5 cut(s) 54, 125, 151, 170, 542
CviKI_1 RGCY 5 cut(s) 54, 125, 151, 170, 542
CviQI GTAC 1 cut(s) 520
DpnI GATC 1 cut(s) 471
DpnII GATC 1 cut(s) 469
Eco31I GGTCTC 2 cut(s) 118, 221
EcoT22I ATGCAT 1 cut(s) 147
FaeI CATG 4 cut(s) 124, 202, 447, 465
FalI AAGNNNNNCTT 2 cut(s) 314, 346
FaqI GGGAC 1 cut(s) 430
FatI CATG 4 cut(s) 120, 198, 443, 461
FokI GGATG 2 cut(s) 489, 506
FspBI CTAG 3 cut(s) 51, 152, 574
GsaI CCCAGC 1 cut(s) 537
Hin1II CATG 4 cut(s) 124, 202, 447, 465
HindIII AAGCTT 1 cut(s) 540
HinfI GANTC 2 cut(s) 280, 440
Hpy166II GTNNAC 1 cut(s) 84
Hpy188III TCNNGA 2 cut(s) 315, 554
Hpy8I GTNNAC 1 cut(s) 84
HpyCH4III ACNGT 3 cut(s) 88, 96, 378
HpyCH4V TGCA 6 cut(s) 120, 145, 198, 447, 465, 547
HpyF10VI GCNNNNNNNGC 1 cut(s) 539
Hsp92II CATG 4 cut(s) 124, 202, 447, 465
Kzo9I GATC 1 cut(s) 469
LmnI GCTCC 1 cut(s) 77
LpnPI CCDG 6 cut(s) 122, 300, 405, 475, 486, 519
LweI GCATC 2 cut(s) 328, 484
MaeI CTAG 3 cut(s) 51, 152, 574
MaeIII GTNAC 1 cut(s) 12
MalI GATC 1 cut(s) 471
MboI GATC 1 cut(s) 469
MboII GAAGA 1 cut(s) 334
MluCI AATT 4 cut(s) 103, 244, 271, 290
MmeI TCCRAC 2 cut(s) 157, 530
MnlI CCTC 2 cut(s) 149, 443
Mph1103I ATGCAT 1 cut(s) 147
MseI TTAA 2 cut(s) 270, 455
MslI CAYNNNNRTG 1 cut(s) 193
MwoI GCNNNNNNNGC 1 cut(s) 539
NdeII GATC 1 cut(s) 469
NlaIII CATG 4 cut(s) 124, 202, 447, 465
NlaIV GGNNCC 1 cut(s) 63
NsiI ATGCAT 1 cut(s) 147
NspI RCATGY 2 cut(s) 202, 465
PaeI GCATGC 1 cut(s) 202
PfeI GAWTC 2 cut(s) 280, 440
PsiI TTATAA 1 cut(s) 249
PspFI CCCAGC 1 cut(s) 533
PspN4I GGNNCC 1 cut(s) 63
RsaI GTAC 1 cut(s) 521
RsaNI GTAC 1 cut(s) 520
RseI CAYNNNNRTG 1 cut(s) 193
SaqAI TTAA 2 cut(s) 270, 455
Sau3AI GATC 1 cut(s) 469
SetI ASST 2 cut(s) 56, 544
SfaNI GCATC 2 cut(s) 328, 484
SfcI CTRYAG 1 cut(s) 426
SmiMI CAYNNNNRTG 1 cut(s) 193
SphI GCATGC 1 cut(s) 202
Sse9I AATT 4 cut(s) 103, 244, 271, 290
SspMI CTAG 3 cut(s) 51, 152, 574
TaaI ACNGT 3 cut(s) 88, 96, 378
TaqI TCGA 1 cut(s) 354
TasI AATT 4 cut(s) 103, 244, 271, 290
TfiI GAWTC 2 cut(s) 280, 440
Tru1I TTAA 2 cut(s) 270, 455
Tru9I TTAA 2 cut(s) 270, 455
TscAI CASTG 2 cut(s) 91, 472
TspDTI ATGAA 2 cut(s) 335, 491
TspRI CASTG 2 cut(s) 91, 472
XceI RCATGY 2 cut(s) 202, 465
XspI CTAG 3 cut(s) 51, 152, 574
Zsp2I ATGCAT 1 cut(s) 147
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.