Prupe.4G119800_v2.0.a1

DDB1- and CUL4-associated factor

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
Physical Location & Seq
Forward (+)
6479274 .. 6487039
7766 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G119800.3

Sequence Viewer

Length: 1548 bp
ATGAATTCGGGTGCAGAACTTCCTGGGTTTTACTATGATGCGGAAAAGAACAGGTACTTCCCCACCAAAGGTCCAATACCCGGCTCCCGTCGTGTGACCACTGCTGCTTCTTCTTCCAACGCTCAAACACCGGCCCAGGTGAGCAATTCATGTAGGCGAACCAGAGTAAAAACTTCTAAGCTGCTTCATGACAGGGAGTTATGTGGTAATCTCATCGCTTCCAGTAAAGGAAGGTGTAACTTTTATGAGGAATTCCAAAAGGCGCAAGTATCCCATCCTGTGGTTTGGAAGTATCAGGGAACAAATCAGTTAGGTGATGGTGCTTTGGAGCGGATTCGCATGGATGTACAGACAGGAGAGGGACTAACTGATACGGACTTTGTATTAGCAGGTGGCGCTGATGGCTCTTTAAGTATTTTTGAAGTTGGGAAAGTTGGGCAGGGTCTTGAGTACGGGATGAAATGTAAGGCAGATCGTGTCTGGCCACTGTTGAACGAAAGTCAACTAGAGTGTAGTGAAGTGCCTGGGCACATATGGAGACCAGCTCAAGCTACACCACGAATGCCATCGAATATATCTCGTATAAAATTGTTTGGAAAGCAGTCTTCTGGCACAGAAGATGAAAGTTCACGCACCCAGCATATGTTGGTATCAACGTTGGGATGTGAGAGGGCTGGTGGGAGTCTTGTGGTTATTAACCTTGTTGAACTACTAAATTTCAATCCAAATAGGCTTGTCTTAAGGCGAAACATTTATGAGATTGCAACTTTCAACTGCACTATTTGGACTGCAGATTGTGAACCTGATGGGAGTCGTGCAGTGATTGGAACCAACCTGGGAGCTGCTTTGGTGGATTTGGAAACTGGGAGGGCATCATGGCTGTTACGCAGTAAAAGTGATGTTTTGGCACAACAACTCGTTCACTCGGGAAATGCTGTTTTATGCGGACTCAGAAATGGAGCAATTGTAACAGTTGATGTTCGTGAGAAACAGGAAGCATTTCCTGCAAGACAAGTTAGACATAGAATGCGCCCCTCACCTTTGGATAACACTCTTGGAAAATCTAGTAAACAATCGTTTAAGCTTTCCAGAAATATGAATTCTTCTCATAGCACTAAAATGCCTTCCTCTATTGCAAGTTTGGTATCGCTTCGGTTTGATGACCAGTACTTCTTGGCAAGCTCCATGGATGGAACAGTGAAGCTTTATGACCAACGGATAATCCAAAGAGGAGCTGTACAATCTTATGAGGGGCATGTGAATTCCCATACTCGTATGCAGCTTGGAGTTGACCCATCTGAGAGATTTTTTATGTCAGGTGGAGAGGACTGCAATTTACGAATTTGGAGTATCAAGTCTGGTGAACTGCTTTTTGAGGATAAATTCTCTAAAACAGTCCCCTCAACTGTGTGCTGGCGGAACGCTGAACGGTTCAACGGAGAGCAGGATGAAAGGCGAAGCTATGAATACCTTGATGCCAAAACTTATGGTTTGGGGGCATGGATTGGATCGCGTGAAGGACTATTTTACATGCACTGGCAAGTGTGA

Protein Analysis

516

Amino Acids

57.36

Weight (kDa)

8.85

Isoelectric Point (pI)

43.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 380
Acc36I ACCTGC 1 cut(s) 380
AccB7I CCANNNNNTGG 1 cut(s) 280
AccBSI CCGCTC 1 cut(s) 331
AccII CGCG 1 cut(s) 1513
AciI CCGC 4 cut(s) 41, 331, 945, 1417
AclI AACGTT 1 cut(s) 656
AclWI GGATC 1 cut(s) 1516
AcoI YGGCCR 1 cut(s) 482
AcsI RAATTY 7 cut(s) 4, 251, 715, 1099, 1261, 1341, 1382
AfaI GTAC 5 cut(s) 56, 348, 452, 1169, 1239
AfiI CCNNNNNNNGG 3 cut(s) 68, 80, 280
AflII CTTAAG 1 cut(s) 739
AgsI TTSAA 6 cut(s) 422, 493, 707, 721, 772, 1435
AjnI CCWGG 4 cut(s) 22, 135, 523, 834
Alw26I GTCTC 1 cut(s) 532
AlwI GGATC 1 cut(s) 1516
Ama87I CYCGRG 1 cut(s) 925
AoxI GGCC 2 cut(s) 132, 482
ApeKI GCWGC 4 cut(s) 104, 181, 842, 1279
ApoI RAATTY 7 cut(s) 4, 251, 715, 1099, 1261, 1341, 1382
Asp700I GAANNNNTTC 1 cut(s) 999
AspLEI GCGC 3 cut(s) 265, 398, 1032
AspS9I GGNCC 2 cut(s) 71, 133
AsuC2I CCSGG 1 cut(s) 81
AsuHPI GGTGA 4 cut(s) 151, 326, 1029, 1373
AvaI CYCGRG 1 cut(s) 925
AvaII GGWCC 1 cut(s) 71
BaeGI GKGCMC 1 cut(s) 531
BalI TGGCCA 1 cut(s) 484
BbsI GAAGAC 1 cut(s) 597
BbvI GCAGC 4 cut(s) 91, 168, 829, 1291
BccI CCATC 7 cut(s) 282, 311, 395, 574, 800, 1184, 1303
BciT130I CCWGG 4 cut(s) 24, 137, 525, 836
BciVI GTATCC 1 cut(s) 280
BcnI CCSGG 1 cut(s) 81
BcoDI GTCTC 1 cut(s) 532
BfaI CTAG 2 cut(s) 506, 1065
BfmI CTRYAG 1 cut(s) 789
BfoI RGCGCY 1 cut(s) 399
BfrI CTTAAG 1 cut(s) 739
BfuAI ACCTGC 1 cut(s) 380
BfuI GTATCC 1 cut(s) 280
BisI GCNGC 4 cut(s) 105, 182, 843, 1280
BlsI GCNGC 4 cut(s) 106, 183, 844, 1281
BmcAI AGTACT 1 cut(s) 1169
Bme1390I CCNGG 5 cut(s) 24, 81, 137, 525, 836
Bme18I GGWCC 1 cut(s) 71
BmeT110I CYCGRG 1 cut(s) 925
BmgT120I GGNCC 2 cut(s) 71, 133
BmiI GGNNCC 2 cut(s) 85, 829
BmrFI CCNGG 5 cut(s) 24, 81, 137, 525, 836
BmrI ACTGGG 1 cut(s) 873
BmsI GCATC 3 cut(s) 28, 881, 1465
BmuI ACTGGG 1 cut(s) 873
BpiI GAAGAC 1 cut(s) 597
BplI GAGNNNNNCTC 2 cut(s) 529, 561
BpuEI CTTGAG 2 cut(s) 467, 531
BpuMI CCSGG 1 cut(s) 81
BsaI GGTCTC 1 cut(s) 532
BsaJI CCNNGG 5 cut(s) 23, 135, 524, 835, 1185
BsaXI ACNNNNNCTCC 2 cut(s) 951, 981
Bsc4I CCNNNNNNNGG 3 cut(s) 68, 80, 280
Bse118I RCCGGY 1 cut(s) 130
Bse1I ACTGG 4 cut(s) 222, 868, 1165, 1541
BseBI CCWGG 4 cut(s) 24, 137, 525, 836
BseDI CCNNGG 5 cut(s) 23, 135, 524, 835, 1185
BseGI GGATG 6 cut(s) 274, 349, 462, 668, 1195, 1453
BseLI CCNNNNNNNGG 3 cut(s) 68, 80, 280
BseMII CTCAG 2 cut(s) 964, 1290
BseNI ACTGG 4 cut(s) 222, 868, 1165, 1541
BseRI GAGGAG 1 cut(s) 1245
BseSI GKGCMC 1 cut(s) 531
BseXI GCAGC 4 cut(s) 91, 168, 829, 1291
BseYI CCCAGC 1 cut(s) 636
BsgI GTGCAG 3 cut(s) 33, 760, 837
Bsh1236I CGCG 1 cut(s) 1513
BshFI GGCC 2 cut(s) 134, 484
BsiHKCI CYCGRG 1 cut(s) 925
BsiSI CCGG 2 cut(s) 81, 131
BslFI GGGAC 2 cut(s) 375, 1382
BslI CCNNNNNNNGG 3 cut(s) 68, 80, 280
BsmAI GTCTC 1 cut(s) 532
BsmFI GGGAC 2 cut(s) 375, 1382
BsmI GAATGC 2 cut(s) 567, 1032
BsnI GGCC 2 cut(s) 134, 484
Bso31I GGTCTC 1 cut(s) 532
BsoBI CYCGRG 1 cut(s) 925
Bsp1286I GDGCHC 1 cut(s) 531
Bsp1407I TGTACA 2 cut(s) 346, 1237
Bsp143I GATC 2 cut(s) 472, 1508
Bsp19I CCATGG 1 cut(s) 1185
BspACI CCGC 4 cut(s) 41, 331, 945, 1417
BspANI GGCC 2 cut(s) 134, 484
BspCNI CTCAG 2 cut(s) 963, 1291
BspFNI CGCG 1 cut(s) 1513
BspHI TCATGA 1 cut(s) 187
BspLI GGNNCC 2 cut(s) 85, 829
BspMAI CTGCAG 1 cut(s) 793
BspMI ACCTGC 1 cut(s) 380
BspPI GGATC 1 cut(s) 1516
BspTI CTTAAG 1 cut(s) 739
BspTNI GGTCTC 1 cut(s) 532
BsrBI CCGCTC 1 cut(s) 331
BsrFI RCCGGY 1 cut(s) 130
BsrGI TGTACA 2 cut(s) 346, 1237
BsrI ACTGG 4 cut(s) 222, 868, 1165, 1541
BssAI RCCGGY 1 cut(s) 130
BssECI CCNNGG 5 cut(s) 23, 135, 524, 835, 1185
BssMI GATC 2 cut(s) 472, 1508
BssT1I CCWWGG 1 cut(s) 1185
Bst2UI CCWGG 4 cut(s) 24, 137, 525, 836
Bst4CI ACNGT 6 cut(s) 489, 973, 1198, 1396, 1408, 1431
BstAFI CTTAAG 1 cut(s) 739
BstAPI GCANNNNNTGC 1 cut(s) 1004
BstAUI TGTACA 2 cut(s) 346, 1237
BstC8I GCNNGC 2 cut(s) 1180, 1415
BstDEI CTNAG 3 cut(s) 177, 950, 1299
BstDSI CCRYGG 1 cut(s) 1185
BstF5I GGATG 6 cut(s) 274, 349, 462, 668, 1195, 1453
BstFNI CGCG 1 cut(s) 1513
BstH2I RGCGCY 1 cut(s) 399
BstHHI GCGC 3 cut(s) 265, 398, 1032
BstKTI GATC 2 cut(s) 475, 1511
BstMAI GTCTC 1 cut(s) 532
BstMBI GATC 2 cut(s) 472, 1508
BstMWI GCNNNNNNNGC 3 cut(s) 395, 402, 1004
BstNI CCWGG 4 cut(s) 24, 137, 525, 836
BstNSI RCATGY 2 cut(s) 1259, 1534
BstSCI CCNGG 5 cut(s) 22, 79, 135, 523, 834
BstSFI CTRYAG 1 cut(s) 789
BstSLI GKGCMC 1 cut(s) 531
BstUI CGCG 1 cut(s) 1513
BstV1I GCAGC 4 cut(s) 91, 168, 829, 1291
BstV2I GAAGAC 1 cut(s) 597
BsuI GTATCC 1 cut(s) 280
BsuRI GGCC 2 cut(s) 134, 484
BtgI CCRYGG 1 cut(s) 1185
BtgZI GCGATG 1 cut(s) 199
BtsCI GGATG 6 cut(s) 274, 349, 462, 668, 1195, 1453
BtsI GCAGTG 2 cut(s) 99, 825
BtsIMutI CAGTG 5 cut(s) 99, 485, 825, 1203, 1534
BveI ACCTGC 1 cut(s) 380
Cac8I GCNNGC 2 cut(s) 1180, 1415
CciI TCATGA 1 cut(s) 187
CfoI GCGC 3 cut(s) 265, 398, 1032
Cfr10I RCCGGY 1 cut(s) 130
Cfr13I GGNCC 2 cut(s) 71, 133
Csp6I GTAC 5 cut(s) 55, 347, 451, 1168, 1238
CviAII CATG 8 cut(s) 150, 188, 340, 876, 1186, 1256, 1500, 1531
CviQI GTAC 5 cut(s) 55, 347, 451, 1168, 1238
DdeI CTNAG 3 cut(s) 177, 950, 1299
DpnI GATC 2 cut(s) 474, 1510
DpnII GATC 2 cut(s) 472, 1508
EaeI YGGCCR 1 cut(s) 482
EciI GGCGGA 1 cut(s) 1432
Eco130I CCWWGG 1 cut(s) 1185
Eco31I GGTCTC 1 cut(s) 532
Eco47I GGWCC 1 cut(s) 71
Eco88I CYCGRG 1 cut(s) 925
EcoRI GAATTC 4 cut(s) 4, 251, 1099, 1261
EcoRII CCWGG 4 cut(s) 22, 135, 523, 834
EcoT14I CCWWGG 1 cut(s) 1185
ErhI CCWWGG 1 cut(s) 1185
FaeI CATG 8 cut(s) 153, 191, 343, 879, 1189, 1259, 1503, 1534
FaqI GGGAC 2 cut(s) 375, 1382
FatI CATG 8 cut(s) 149, 187, 339, 875, 1185, 1255, 1499, 1530
FauNDI CATATG 2 cut(s) 533, 642
Fnu4HI GCNGC 4 cut(s) 105, 182, 843, 1280
FokI GGATG 6 cut(s) 261, 356, 469, 675, 1202, 1460
Fsp4HI GCNGC 4 cut(s) 105, 182, 843, 1280
FspBI CTAG 2 cut(s) 506, 1065
GlaI GCGC 3 cut(s) 264, 397, 1031
GluI GCNGC 4 cut(s) 105, 182, 843, 1280
GsaI CCCAGC 1 cut(s) 640
HaeII RGCGCY 1 cut(s) 399
HaeIII GGCC 2 cut(s) 134, 484
HapII CCGG 2 cut(s) 81, 131
HhaI GCGC 3 cut(s) 265, 398, 1032
Hin1II CATG 8 cut(s) 153, 191, 343, 879, 1189, 1259, 1503, 1534
Hin6I GCGC 3 cut(s) 263, 396, 1030
HinP1I GCGC 3 cut(s) 263, 396, 1030
HincII GTYRAC 2 cut(s) 503, 1291
HindII GTYRAC 2 cut(s) 503, 1291
HindIII AAGCTT 2 cut(s) 1082, 1202
HinfI GANTC 4 cut(s) 334, 682, 811, 948
HpaII CCGG 2 cut(s) 81, 131
HphI GGTGA 4 cut(s) 151, 326, 1029, 1373
Hpy166II GTNNAC 7 cut(s) 503, 629, 800, 922, 1070, 1291, 1364
Hpy188I TCNGA 2 cut(s) 953, 1300
Hpy188III TCNNGA 5 cut(s) 188, 446, 927, 983, 1089
Hpy8I GTNNAC 7 cut(s) 503, 629, 800, 922, 1070, 1291, 1364
Hpy99I CGWCG 1 cut(s) 93
HpyAV CCTTC 3 cut(s) 225, 1134, 1511
HpyCH4III ACNGT 6 cut(s) 489, 973, 1198, 1396, 1408, 1431
HpyCH4IV ACGT 1 cut(s) 656
HpyF10VI GCNNNNNNNGC 3 cut(s) 395, 402, 1004
HpyF3I CTNAG 3 cut(s) 177, 950, 1299
HpySE526I ACGT 1 cut(s) 656
Hsp92II CATG 8 cut(s) 153, 191, 343, 879, 1189, 1259, 1503, 1534
HspAI GCGC 3 cut(s) 263, 396, 1030
Kzo9I GATC 2 cut(s) 472, 1508
LmnI GCTCC 6 cut(s) 89, 328, 839, 959, 1187, 1232
Lsp1109I GCAGC 4 cut(s) 91, 168, 829, 1291
LweI GCATC 3 cut(s) 28, 881, 1465
MaeI CTAG 2 cut(s) 506, 1065
MaeII ACGT 1 cut(s) 656
MaeIII GTNAC 4 cut(s) 94, 236, 882, 967
MalI GATC 2 cut(s) 474, 1510
MbiI CCGCTC 1 cut(s) 331
MboI GATC 2 cut(s) 472, 1508
MboII GAAGA 5 cut(s) 102, 105, 597, 629, 1095
MfeI CAATTG 1 cut(s) 963
MhlI GDGCHC 1 cut(s) 531
MlsI TGGCCA 1 cut(s) 484
MluNI TGGCCA 1 cut(s) 484
MlyI GAGTC 3 cut(s) 691, 820, 942
MmeI TCCRAC 1 cut(s) 141
Mox20I TGGCCA 1 cut(s) 484
MroXI GAANNNNTTC 1 cut(s) 999
MscI TGGCCA 1 cut(s) 484
MseI TTAA 4 cut(s) 410, 696, 740, 1080
MslI CAYNNNNRTG 1 cut(s) 1118
Msp20I TGGCCA 1 cut(s) 484
MspCI CTTAAG 1 cut(s) 739
MspI CCGG 2 cut(s) 81, 131
MspR9I CCNGG 5 cut(s) 24, 81, 137, 525, 836
MunI CAATTG 1 cut(s) 963
Mva1269I GAATGC 2 cut(s) 567, 1032
MvaI CCWGG 4 cut(s) 24, 137, 525, 836
MvnI CGCG 1 cut(s) 1513
MwoI GCNNNNNNNGC 3 cut(s) 395, 402, 1004
NciI CCSGG 1 cut(s) 81
NcoI CCATGG 1 cut(s) 1185
NdeI CATATG 2 cut(s) 533, 642
NdeII GATC 2 cut(s) 472, 1508
NlaIII CATG 8 cut(s) 153, 191, 343, 879, 1189, 1259, 1503, 1534
NlaIV GGNNCC 2 cut(s) 85, 829
NmuCI GTSAC 1 cut(s) 94
NspI RCATGY 2 cut(s) 1259, 1534
PagI TCATGA 1 cut(s) 187
PaqCI CACCTGC 1 cut(s) 380
PctI GAATGC 2 cut(s) 567, 1032
PdmI GAANNNNTTC 1 cut(s) 999
PfeI GAWTC 1 cut(s) 334
PflMI CCANNNNNTGG 1 cut(s) 280
PkrI GCNGC 4 cut(s) 106, 183, 844, 1281
PleI GAGTC 3 cut(s) 690, 819, 942
PpsI GAGTC 3 cut(s) 690, 819, 942
Psp1406I AACGTT 1 cut(s) 656
Psp6I CCWGG 4 cut(s) 22, 135, 523, 834
PspFI CCCAGC 1 cut(s) 636
PspGI CCWGG 4 cut(s) 22, 135, 523, 834
PspN4I GGNNCC 2 cut(s) 85, 829
PspPI GGNCC 2 cut(s) 71, 133
PstI CTGCAG 1 cut(s) 793
RsaI GTAC 5 cut(s) 56, 348, 452, 1169, 1239
RsaNI GTAC 5 cut(s) 55, 347, 451, 1168, 1238
RseI CAYNNNNRTG 1 cut(s) 1118
SaqAI TTAA 4 cut(s) 410, 696, 740, 1080
SatI GCNGC 4 cut(s) 105, 182, 843, 1280
Sau3AI GATC 2 cut(s) 472, 1508
Sau96I GGNCC 2 cut(s) 71, 133
ScaI AGTACT 1 cut(s) 1169
SchI GAGTC 3 cut(s) 691, 820, 942
ScrFI CCNGG 5 cut(s) 24, 81, 137, 525, 836
SduI GDGCHC 1 cut(s) 531
SfaNI GCATC 3 cut(s) 28, 881, 1465
SfcI CTRYAG 1 cut(s) 789
SinI GGWCC 1 cut(s) 71
SmiMI CAYNNNNRTG 1 cut(s) 1118
SmlI CTYRAG 3 cut(s) 446, 546, 739
SmoI CTYRAG 3 cut(s) 446, 546, 739
SsiI CCGC 4 cut(s) 41, 331, 945, 1417
SspMI CTAG 2 cut(s) 506, 1065
StyD4I CCNGG 5 cut(s) 22, 79, 135, 523, 834
StyI CCWWGG 1 cut(s) 1185
TaaI ACNGT 6 cut(s) 489, 973, 1198, 1396, 1408, 1431
TaiI ACGT 1 cut(s) 659
TaqI TCGA 1 cut(s) 569
TatI WGTACW 3 cut(s) 346, 1167, 1237
TfiI GAWTC 1 cut(s) 334
Tru1I TTAA 4 cut(s) 410, 696, 740, 1080
Tru9I TTAA 4 cut(s) 410, 696, 740, 1080
TscAI CASTG 5 cut(s) 106, 492, 825, 1203, 1541
TseFI GTSAC 1 cut(s) 94
TseI GCWGC 4 cut(s) 104, 181, 842, 1279
Tsp45I GTSAC 1 cut(s) 94
TspDTI ATGAA 8 cut(s) 17, 138, 176, 473, 636, 1112, 1464, 1479
TspGWI ACGGA 3 cut(s) 389, 1231, 1452
TspRI CASTG 5 cut(s) 106, 492, 825, 1203, 1541
Van91I CCANNNNNTGG 1 cut(s) 280
Vha464I CTTAAG 1 cut(s) 739
VpaK11BI GGWCC 1 cut(s) 71
XapI RAATTY 7 cut(s) 4, 251, 715, 1099, 1261, 1341, 1382
XceI RCATGY 2 cut(s) 1259, 1534
XmnI GAANNNNTTC 1 cut(s) 999
XspI CTAG 2 cut(s) 506, 1065
ZrmI AGTACT 1 cut(s) 1169
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.