Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0003598

Physical Location & Seq

Genomic Coordinates Reverse (-)

5814025 .. 5815225

Gene Structure 1201 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0067800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

ATGCAAGCAATTCCATACGGATCGTGGGCGTCAGATGCCCCGGCGCTGCATGTGTCGACACGGGAGGAGGTTTCGGTATCTTCTCCCGTGTCGACGGTCGCAGCTACCGTTCAAAAGCTGGTATCGGAGAATGCGGTTATAGTCGTTGGGAGGCGCGGCTGCTGCATGAGCCACGTGGTGACGCGGTTGTTACTCGGTCACGGCGTGAATCCCGCGGTTTTCGACGTGGACGAGGACGACGAGGCCGCTGTTGTCGTTGAGCTACGTAAGAGGATGACGATCGTTGGAGATGAGAGTGTTATTAACAATTGGCCGCAGTTTCCGGTGGTTTTTGTCGGCGGGAAGTTGTTTGGTGGGTTGGAGAGGGTTATGGCGACGCATATTTCCGGCGAGCTAGTTCCGGTGTTGAAAGAAGCTGGAGCTCTCTGGCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005682 GO:0006139 GO:0006396 GO:0006464 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0019538 GO:0030532 GO:0031461 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043687 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0071011 GO:0071013 GO:0071704 GO:0080008 GO:0090304 GO:0097159 GO:0097525 GO:0120114 GO:1901360 GO:1901363 GO:1901564 GO:1902494 GO:1990234 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

144

Amino Acids

15.39

Weight (kDa)

5.27

Isoelectric Point (pI)

41.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glutaredoxin	PF00462	46 - 116	3.1e-11	Glutaredoxin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003598)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G17370 AT5G17370
fragaria_vesca	FvH4_3g13240 FvH4_3g13240 FvH4_3g13240 FvH4_3g13240 FvH4_3g13240
malus_domestica	MD05G1243800.v1.1
prunus_persica	Prupe.4G119800_v2.0.a1 Prupe.4G119800_v2.0.a1 Prupe.4G119800_v2.0.a1 Prupe.4G119800_v2.0.a1
pyrus_communis	pycom05g22030 pycom10g18960
rosa_chinensis	RchiOBHm_Chr5g0021601 RchiOBHm_Chr5g0021611 RchiOBHm_Chr5g0021701
rosa_laevigata	RLG00000032617
rosa_multiflora	Rmu_sc0009984.1_g000013 Rmu_sc0016972.1_g000002
rosa_roxburghii	Rroxscaffold_1G00057050 Rroxscaffold_2G00125890 Rroxscaffold_3G00228540 Rroxscaffold_3G00229610 Rroxscaffold_4G00317430
rosa_rugosa	Rorug05G0067600 Rorug05G0067700 Rorug05G0067800
rosa_samantha	Rh5AG157000 Rh5BG156500 Rh5CG170800 Rh5DG156800
rosa_wichuraiana	Rw0G000530 Rw0G007040 Rw5G013950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	56, 92
AccII	CGCG	3 cut(s)	156, 184, 215
AciI	CCGC	8 cut(s)	134, 156, 184, 213, 215, 246, 314, 339
AclWI	GGATC	1 cut(s)	28
AcoI	YGGCCR	1 cut(s)	311
AcvI	CACGTG	1 cut(s)	175
AcyI	GRCGYC	1 cut(s)	29
AdeI	CACNNNGTG	2 cut(s)	178, 205
AgsI	TTSAA	2 cut(s)	113, 409
AjiI	CACGTC	1 cut(s)	226
AluBI	AGCT	6 cut(s)	104, 118, 262, 394, 416, 422
AluI	AGCT	6 cut(s)	104, 118, 262, 394, 416, 422
Alw21I	GWGCWC	1 cut(s)	424
AlwI	GGATC	1 cut(s)	28
AoxI	GGCC	2 cut(s)	243, 311
ApeKI	GCWGC	4 cut(s)	46, 101, 159, 162
AspLEI	GCGC	2 cut(s)	46, 156
AsuC2I	CCSGG	1 cut(s)	41
AsuHPI	GGTGA	1 cut(s)	190
BanII	GRGCYC	1 cut(s)	424
BbrPI	CACGTG	1 cut(s)	175
Bbv12I	GWGCWC	1 cut(s)	424
BbvI	GCAGC	4 cut(s)	33, 113, 146, 149
BceAI	ACGGC	1 cut(s)	217
BcnI	CCSGG	1 cut(s)	41
BfaI	CTAG	1 cut(s)	395
BfoI	RGCGCY	1 cut(s)	47
BisI	GCNGC	7 cut(s)	47, 102, 157, 160, 163, 246, 314
BlsI	GCNGC	7 cut(s)	48, 103, 158, 161, 164, 247, 315
Bme1390I	CCNGG	1 cut(s)	41
BmgBI	CACGTC	1 cut(s)	226
BmrFI	CCNGG	1 cut(s)	41
BmsI	GCATC	1 cut(s)	25
BpuMI	CCSGG	1 cut(s)	41
BsaAI	YACGTR	2 cut(s)	175, 266
BsaBI	GATNNNNATC	1 cut(s)	278
BsaHI	GRCGYC	1 cut(s)	29
BsaJI	CCNNGG	2 cut(s)	39, 213
BsaWI	WCCGGW	2 cut(s)	322, 400
Bse8I	GATNNNNATC	1 cut(s)	278
BseDI	CCNNGG	2 cut(s)	39, 213
BseGI	GGATG	1 cut(s)	279
BseJI	GATNNNNATC	1 cut(s)	278
BseRI	GAGGAG	1 cut(s)	80
BseXI	GCAGC	4 cut(s)	33, 113, 146, 149
Bsh1236I	CGCG	3 cut(s)	156, 184, 215
Bsh1285I	CGRYCG	2 cut(s)	99, 282
BshFI	GGCC	2 cut(s)	245, 313
BsiEI	CGRYCG	2 cut(s)	99, 282
BsiHKAI	GWGCWC	1 cut(s)	424
BsiSI	CCGG	4 cut(s)	41, 323, 387, 401
BsmI	GAATGC	1 cut(s)	136
BsnI	GGCC	2 cut(s)	245, 313
Bsp1286I	GDGCHC	1 cut(s)	424
Bsp143I	GATC	2 cut(s)	20, 279
BspACI	CCGC	8 cut(s)	134, 156, 184, 213, 215, 246, 314, 339
BspANI	GGCC	2 cut(s)	245, 313
BspFNI	CGCG	3 cut(s)	156, 184, 215
BspPI	GGATC	1 cut(s)	28
BssECI	CCNNGG	2 cut(s)	39, 213
BssMI	GATC	2 cut(s)	20, 279
BssNI	GRCGYC	1 cut(s)	29
Bst4CI	ACNGT	2 cut(s)	97, 109
BstACI	GRCGYC	1 cut(s)	29
BstBAI	YACGTR	2 cut(s)	175, 266
BstC8I	GCNNGC	2 cut(s)	6, 392
BstDSI	CCRYGG	1 cut(s)	213
BstF5I	GGATG	1 cut(s)	279
BstFNI	CGCG	3 cut(s)	156, 184, 215
BstH2I	RGCGCY	1 cut(s)	47
BstHHI	GCGC	2 cut(s)	46, 156
BstKTI	GATC	2 cut(s)	23, 282
BstMBI	GATC	2 cut(s)	20, 279
BstMCI	CGRYCG	2 cut(s)	99, 282
BstMWI	GCNNNNNNNGC	3 cut(s)	35, 162, 168
BstNSI	RCATGY	1 cut(s)	53
BstSCI	CCNGG	1 cut(s)	39
BstSNI	TACGTA	1 cut(s)	266
BstUI	CGCG	3 cut(s)	156, 184, 215
BstV1I	GCAGC	4 cut(s)	33, 113, 146, 149
BsuRI	GGCC	2 cut(s)	245, 313
BtgI	CCRYGG	1 cut(s)	213
BtrI	CACGTC	1 cut(s)	226
BtsCI	GGATG	1 cut(s)	279
Cac8I	GCNNGC	2 cut(s)	6, 392
CfoI	GCGC	2 cut(s)	46, 156
Cfr42I	CCGCGG	1 cut(s)	216
CseI	GACGC	3 cut(s)	18, 190, 385
CviAII	CATG	2 cut(s)	50, 166
DpnI	GATC	2 cut(s)	22, 281
DpnII	GATC	2 cut(s)	20, 279
DraIII	CACNNNGTG	2 cut(s)	178, 205
EaeI	YGGCCR	1 cut(s)	311
Ecl136II	GAGCTC	1 cut(s)	422
Eco105I	TACGTA	1 cut(s)	266
Eco24I	GRGCYC	1 cut(s)	424
Eco53kI	GAGCTC	1 cut(s)	422
Eco72I	CACGTG	1 cut(s)	175
EcoICRI	GAGCTC	1 cut(s)	422
EcoT38I	GRGCYC	1 cut(s)	424
FaeI	CATG	2 cut(s)	53, 169
FaiI	YATR	6 cut(s)	16, 51, 140, 167, 371, 381
FatI	CATG	2 cut(s)	49, 165
FauI	CCCGC	2 cut(s)	220, 332
FblI	GTMKAC	2 cut(s)	56, 92
Fnu4HI	GCNGC	7 cut(s)	47, 102, 157, 160, 163, 246, 314
FokI	GGATG	1 cut(s)	286
FriOI	GRGCYC	1 cut(s)	424
Fsp4HI	GCNGC	7 cut(s)	47, 102, 157, 160, 163, 246, 314
FspBI	CTAG	1 cut(s)	395
GlaI	GCGC	2 cut(s)	45, 155
GluI	GCNGC	7 cut(s)	47, 102, 157, 160, 163, 246, 314
HaeII	RGCGCY	1 cut(s)	47
HaeIII	GGCC	2 cut(s)	245, 313
HapII	CCGG	4 cut(s)	41, 323, 387, 401
HgaI	GACGC	3 cut(s)	18, 190, 385
HhaI	GCGC	2 cut(s)	46, 156
Hin1I	GRCGYC	1 cut(s)	29
Hin1II	CATG	2 cut(s)	53, 169
Hin6I	GCGC	2 cut(s)	44, 154
HinP1I	GCGC	2 cut(s)	44, 154
HincII	GTYRAC	2 cut(s)	57, 93
HindII	GTYRAC	2 cut(s)	57, 93
HinfI	GANTC	1 cut(s)	208
HpaII	CCGG	4 cut(s)	41, 323, 387, 401
HphI	GGTGA	1 cut(s)	190
Hpy166II	GTNNAC	3 cut(s)	57, 93, 229
Hpy188I	TCNGA	2 cut(s)	34, 127
Hpy8I	GTNNAC	3 cut(s)	57, 93, 229
Hpy99I	CGWCG	4 cut(s)	97, 227, 242, 379
HpyCH4III	ACNGT	2 cut(s)	97, 109
HpyCH4IV	ACGT	3 cut(s)	174, 225, 265
HpyCH4V	TGCA	3 cut(s)	4, 49, 165
HpyF10VI	GCNNNNNNNGC	3 cut(s)	35, 162, 168
HpySE526I	ACGT	3 cut(s)	174, 225, 265
Hsp92I	GRCGYC	1 cut(s)	29
Hsp92II	CATG	2 cut(s)	53, 169
HspAI	GCGC	2 cut(s)	44, 154
KspI	CCGCGG	1 cut(s)	216
Kzo9I	GATC	2 cut(s)	20, 279
LmnI	GCTCC	1 cut(s)	419
LpnPI	CCDG	7 cut(s)	54, 104, 336, 400, 402, 412, 414
Lsp1109I	GCAGC	4 cut(s)	33, 113, 146, 149
LweI	GCATC	1 cut(s)	25
MaeI	CTAG	1 cut(s)	395
MaeII	ACGT	3 cut(s)	174, 225, 265
MaeIII	GTNAC	3 cut(s)	178, 189, 197
MalI	GATC	2 cut(s)	22, 281
MboI	GATC	2 cut(s)	20, 279
MboII	GAAGA	1 cut(s)	72
MfeI	CAATTG	1 cut(s)	307
MhlI	GDGCHC	1 cut(s)	424
MluCI	AATT	2 cut(s)	9, 307
MmeI	TCCRAC	2 cut(s)	265, 339
MnlI	CCTC	7 cut(s)	58, 61, 144, 226, 235, 264, 357
MseI	TTAA	1 cut(s)	303
MspA1I	CMGCKG	2 cut(s)	215, 248
MspI	CCGG	4 cut(s)	41, 323, 387, 401
MspR9I	CCNGG	1 cut(s)	41
MunI	CAATTG	1 cut(s)	307
Mva1269I	GAATGC	1 cut(s)	136
MvnI	CGCG	3 cut(s)	156, 184, 215
MwoI	GCNNNNNNNGC	3 cut(s)	35, 162, 168
NciI	CCSGG	1 cut(s)	41
NdeII	GATC	2 cut(s)	20, 279
NlaIII	CATG	2 cut(s)	53, 169
NmuCI	GTSAC	2 cut(s)	178, 197
NspI	RCATGY	1 cut(s)	53
PcsI	WCGNNNNNNNCGW	4 cut(s)	105, 201, 228, 237
PctI	GAATGC	1 cut(s)	136
PfeI	GAWTC	1 cut(s)	208
PkrI	GCNGC	7 cut(s)	48, 103, 158, 161, 164, 247, 315
Ple19I	CGATCG	1 cut(s)	282
PmaCI	CACGTG	1 cut(s)	175
PmlI	CACGTG	1 cut(s)	175
Ppu21I	YACGTR	2 cut(s)	175, 266
Psp124BI	GAGCTC	1 cut(s)	424
PspCI	CACGTG	1 cut(s)	175
PvuI	CGATCG	1 cut(s)	282
SacI	GAGCTC	1 cut(s)	424
SacII	CCGCGG	1 cut(s)	216
SalI	GTCGAC	2 cut(s)	55, 91
SaqAI	TTAA	1 cut(s)	303
SatI	GCNGC	7 cut(s)	47, 102, 157, 160, 163, 246, 314
Sau3AI	GATC	2 cut(s)	20, 279
ScrFI	CCNGG	1 cut(s)	41
SduI	GDGCHC	1 cut(s)	424
SfaNI	GCATC	1 cut(s)	25
Sfr303I	CCGCGG	1 cut(s)	216
SgrBI	CCGCGG	1 cut(s)	216
SnaBI	TACGTA	1 cut(s)	266
Sse9I	AATT	2 cut(s)	9, 307
SsiI	CCGC	8 cut(s)	134, 156, 184, 213, 215, 246, 314, 339
SspMI	CTAG	1 cut(s)	395
SstI	GAGCTC	1 cut(s)	424
StyD4I	CCNGG	1 cut(s)	39
TaaI	ACNGT	2 cut(s)	97, 109
TaiI	ACGT	3 cut(s)	177, 228, 268
TaqI	TCGA	3 cut(s)	56, 92, 222
TaqII	GACCGA	1 cut(s)	185
TasI	AATT	2 cut(s)	9, 307
TauI	GCSGC	3 cut(s)	159, 248, 316
TfiI	GAWTC	1 cut(s)	208
Tru1I	TTAA	1 cut(s)	303
Tru9I	TTAA	1 cut(s)	303
TseFI	GTSAC	2 cut(s)	178, 197
TseI	GCWGC	4 cut(s)	46, 101, 159, 162
Tsp45I	GTSAC	2 cut(s)	178, 197
TspGWI	ACGGA	1 cut(s)	33
XceI	RCATGY	1 cut(s)	53
XcmI	CCANNNNNNNNNTGG	1 cut(s)	21
XmiI	GTMKAC	2 cut(s)	56, 92
XspI	CTAG	1 cut(s)	395

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.