DDB1- and CUL4-associated factor
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G17370 AT5G17370 |
| fragaria_vesca | FvH4_3g13240 FvH4_3g13240 FvH4_3g13240 FvH4_3g13240 FvH4_3g13240 |
| malus_domestica | MD05G1243800.v1.1 |
| prunus_persica | Prupe.4G119800_v2.0.a1 Prupe.4G119800_v2.0.a1 Prupe.4G119800_v2.0.a1 Prupe.4G119800_v2.0.a1 |
| pyrus_communis | pycom05g22030 pycom10g18960 |
| rosa_chinensis | RchiOBHm_Chr5g0021601 RchiOBHm_Chr5g0021611 RchiOBHm_Chr5g0021701 |
| rosa_laevigata | RLG00000032617 |
| rosa_multiflora | Rmu_sc0009984.1_g000013 Rmu_sc0016972.1_g000002 |
| rosa_roxburghii | Rroxscaffold_1G00057050 Rroxscaffold_2G00125890 Rroxscaffold_3G00228540 Rroxscaffold_3G00229610 Rroxscaffold_4G00317430 |
| rosa_rugosa | Rorug05G0067600 Rorug05G0067700 Rorug05G0067800 |
| rosa_samantha | Rh5AG157000 Rh5BG156500 Rh5CG170800 Rh5DG156800 |
| rosa_wichuraiana | Rw0G000530 Rw0G007040 Rw5G013950 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 383 |
| Acc36I | ACCTGC | 1 cut(s) | 383 |
| AccB1I | GGYRCC | 1 cut(s) | 523 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 283 |
| AccBSI | CCGCTC | 1 cut(s) | 334 |
| AccI | GTMKAC | 1 cut(s) | 1072 |
| AccII | CGCG | 1 cut(s) | 1057 |
| AccIII | TCCGGA | 1 cut(s) | 34 |
| AciI | CCGC | 2 cut(s) | 207, 334 |
| AclI | AACGTT | 1 cut(s) | 659 |
| AclWI | GGATC | 4 cut(s) | 26, 85, 691, 719 |
| AcoI | YGGCCR | 1 cut(s) | 135 |
| AcsI | RAATTY | 2 cut(s) | 254, 1271 |
| AcuI | CTGAAG | 1 cut(s) | 173 |
| AcyI | GRCGYC | 1 cut(s) | 131 |
| AfaI | GTAC | 4 cut(s) | 50, 351, 515, 1249 |
| AfeI | AGCGCT | 1 cut(s) | 124 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 61, 62, 74, 283 |
| AflII | CTTAAG | 1 cut(s) | 742 |
| AflIII | ACRYGT | 1 cut(s) | 1055 |
| AgsI | TTSAA | 4 cut(s) | 226, 247, 425, 775 |
| AhlI | ACTAGT | 1 cut(s) | 1067 |
| AjnI | CCWGG | 5 cut(s) | 16, 73, 526, 610, 837 |
| AluBI | AGCT | 7 cut(s) | 548, 668, 845, 1192, 1214, 1245, 1292 |
| AluI | AGCT | 7 cut(s) | 548, 668, 845, 1192, 1214, 1245, 1292 |
| Alw21I | GWGCWC | 1 cut(s) | 1194 |
| Alw26I | GTCTC | 1 cut(s) | 612 |
| AlwI | GGATC | 4 cut(s) | 26, 85, 691, 719 |
| Ama87I | CYCGRG | 1 cut(s) | 928 |
| Aor13HI | TCCGGA | 1 cut(s) | 34 |
| Aor51HI | AGCGCT | 1 cut(s) | 124 |
| AoxI | GGCC | 3 cut(s) | 64, 135, 485 |
| ApaI | GGGCCC | 1 cut(s) | 68 |
| ApeKI | GCWGC | 2 cut(s) | 845, 1289 |
| ApoI | RAATTY | 2 cut(s) | 254, 1271 |
| AspLEI | GCGC | 3 cut(s) | 125, 326, 875 |
| AspS9I | GGNCC | 2 cut(s) | 64, 65 |
| AsuHPI | GGTGA | 3 cut(s) | 154, 1032, 1220 |
| AvaI | CYCGRG | 1 cut(s) | 928 |
| BaeGI | GKGCMC | 1 cut(s) | 68 |
| BanI | GGYRCC | 1 cut(s) | 523 |
| BanII | GRGCYC | 2 cut(s) | 68, 1194 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 32, 64 |
| Bbv12I | GWGCWC | 1 cut(s) | 1194 |
| BbvI | GCAGC | 1 cut(s) | 832 |
| BccI | CCATC | 6 cut(s) | 65, 285, 314, 577, 803, 1194 |
| BciT130I | CCWGG | 5 cut(s) | 18, 75, 528, 612, 839 |
| BcoDI | GTCTC | 1 cut(s) | 612 |
| BcuI | ACTAGT | 1 cut(s) | 1067 |
| BfaI | CTAG | 3 cut(s) | 195, 495, 1068 |
| BfmI | CTRYAG | 1 cut(s) | 792 |
| BfoI | RGCGCY | 2 cut(s) | 126, 327 |
| BfrI | CTTAAG | 1 cut(s) | 742 |
| BfuAI | ACCTGC | 1 cut(s) | 383 |
| BglII | AGATCT | 1 cut(s) | 10 |
| BisI | GCNGC | 2 cut(s) | 846, 1290 |
| BlsI | GCNGC | 2 cut(s) | 847, 1291 |
| Bme1390I | CCNGG | 5 cut(s) | 18, 75, 528, 612, 839 |
| BmeT110I | CYCGRG | 1 cut(s) | 928 |
| BmgT120I | GGNCC | 2 cut(s) | 64, 65 |
| BmiI | GGNNCC | 3 cut(s) | 66, 525, 832 |
| BmrFI | CCNGG | 5 cut(s) | 18, 75, 528, 612, 839 |
| BmrI | ACTGGG | 1 cut(s) | 876 |
| BmsI | GCATC | 3 cut(s) | 174, 645, 884 |
| BmuI | ACTGGG | 1 cut(s) | 876 |
| BpmI | CTGGAG | 1 cut(s) | 530 |
| Bsa29I | ATCGAT | 1 cut(s) | 1171 |
| BsaHI | GRCGYC | 1 cut(s) | 131 |
| BsaJI | CCNNGG | 6 cut(s) | 17, 73, 138, 527, 838, 1195 |
| BsaWI | WCCGGW | 1 cut(s) | 34 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 954, 984 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 61, 62, 74, 283 |
| Bse118I | RCCGGY | 1 cut(s) | 133 |
| Bse1I | ACTGG | 4 cut(s) | 165, 513, 871, 1102 |
| BseAI | TCCGGA | 1 cut(s) | 34 |
| BseBI | CCWGG | 5 cut(s) | 18, 75, 528, 612, 839 |
| BseCI | ATCGAT | 1 cut(s) | 1171 |
| BseDI | CCNNGG | 6 cut(s) | 17, 73, 138, 527, 838, 1195 |
| BseGI | GGATG | 6 cut(s) | 277, 352, 465, 636, 1108, 1205 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 61, 62, 74, 283 |
| BseMII | CTCAG | 3 cut(s) | 140, 660, 967 |
| BseNI | ACTGG | 4 cut(s) | 165, 513, 871, 1102 |
| BseRI | GAGGAG | 1 cut(s) | 1255 |
| BseSI | GKGCMC | 1 cut(s) | 68 |
| BseXI | GCAGC | 1 cut(s) | 832 |
| BsgI | GTGCAG | 1 cut(s) | 763 |
| Bsh1236I | CGCG | 1 cut(s) | 1057 |
| BshFI | GGCC | 3 cut(s) | 66, 137, 487 |
| BshNI | GGYRCC | 1 cut(s) | 523 |
| BshVI | ATCGAT | 1 cut(s) | 1171 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1194 |
| BsiHKCI | CYCGRG | 1 cut(s) | 928 |
| BsiSI | CCGG | 2 cut(s) | 35, 134 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 61, 62, 74, 283 |
| BsmAI | GTCTC | 1 cut(s) | 612 |
| BsmI | GAATGC | 1 cut(s) | 1035 |
| BsnI | GGCC | 3 cut(s) | 66, 137, 487 |
| BsoBI | CYCGRG | 1 cut(s) | 928 |
| Bsp120I | GGGCCC | 1 cut(s) | 64 |
| Bsp1286I | GDGCHC | 2 cut(s) | 68, 1194 |
| Bsp13I | TCCGGA | 1 cut(s) | 34 |
| Bsp1407I | TGTACA | 2 cut(s) | 349, 1247 |
| Bsp143I | GATC | 7 cut(s) | 10, 31, 77, 683, 724, 1168, 1172 |
| Bsp19I | CCATGG | 1 cut(s) | 1195 |
| BspACI | CCGC | 2 cut(s) | 207, 334 |
| BspANI | GGCC | 3 cut(s) | 66, 137, 487 |
| BspCNI | CTCAG | 3 cut(s) | 139, 661, 966 |
| BspDI | ATCGAT | 1 cut(s) | 1171 |
| BspEI | TCCGGA | 1 cut(s) | 34 |
| BspFNI | CGCG | 1 cut(s) | 1057 |
| BspLI | GGNNCC | 3 cut(s) | 66, 525, 832 |
| BspMI | ACCTGC | 1 cut(s) | 383 |
| BspPI | GGATC | 4 cut(s) | 26, 85, 691, 719 |
| BspT107I | GGYRCC | 1 cut(s) | 523 |
| BspTI | CTTAAG | 1 cut(s) | 742 |
| BsrBI | CCGCTC | 1 cut(s) | 334 |
| BsrFI | RCCGGY | 1 cut(s) | 133 |
| BsrGI | TGTACA | 2 cut(s) | 349, 1247 |
| BsrI | ACTGG | 4 cut(s) | 165, 513, 871, 1102 |
| BssAI | RCCGGY | 1 cut(s) | 133 |
| BssECI | CCNNGG | 6 cut(s) | 17, 73, 138, 527, 838, 1195 |
| BssMI | GATC | 7 cut(s) | 10, 31, 77, 683, 724, 1168, 1172 |
| BssNAI | GTATAC | 1 cut(s) | 1073 |
| BssNI | GRCGYC | 1 cut(s) | 131 |
| BssT1I | CCWWGG | 2 cut(s) | 138, 1195 |
| Bst1107I | GTATAC | 1 cut(s) | 1073 |
| Bst2UI | CCWGG | 5 cut(s) | 18, 75, 528, 612, 839 |
| Bst4CI | ACNGT | 8 cut(s) | 518, 606, 739, 784, 893, 976, 1080, 1208 |
| BstACI | GRCGYC | 1 cut(s) | 131 |
| BstAFI | CTTAAG | 1 cut(s) | 742 |
| BstAUI | TGTACA | 2 cut(s) | 349, 1247 |
| BstC8I | GCNNGC | 3 cut(s) | 135, 274, 1190 |
| BstDEI | CTNAG | 5 cut(s) | 126, 180, 669, 953, 1083 |
| BstDSI | CCRYGG | 1 cut(s) | 1195 |
| BstEII | GGTNACC | 1 cut(s) | 142 |
| BstF5I | GGATG | 6 cut(s) | 277, 352, 465, 636, 1108, 1205 |
| BstFNI | CGCG | 1 cut(s) | 1057 |
| BstH2I | RGCGCY | 2 cut(s) | 126, 327 |
| BstHHI | GCGC | 3 cut(s) | 125, 326, 875 |
| BstKTI | GATC | 7 cut(s) | 13, 34, 80, 686, 727, 1171, 1175 |
| BstMAI | GTCTC | 1 cut(s) | 612 |
| BstMBI | GATC | 7 cut(s) | 10, 31, 77, 683, 724, 1168, 1172 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 405 |
| BstNI | CCWGG | 5 cut(s) | 18, 75, 528, 612, 839 |
| BstNSI | RCATGY | 1 cut(s) | 276 |
| BstPI | GGTNACC | 1 cut(s) | 142 |
| BstSCI | CCNGG | 5 cut(s) | 16, 73, 526, 610, 837 |
| BstSFI | CTRYAG | 1 cut(s) | 792 |
| BstSLI | GKGCMC | 1 cut(s) | 68 |
| BstUI | CGCG | 1 cut(s) | 1057 |
| BstV1I | GCAGC | 1 cut(s) | 832 |
| BstX2I | RGATCY | 3 cut(s) | 10, 77, 683 |
| BstYI | RGATCY | 3 cut(s) | 10, 77, 683 |
| BstZ17I | GTATAC | 1 cut(s) | 1073 |
| Bsu15I | ATCGAT | 1 cut(s) | 1171 |
| BsuRI | GGCC | 3 cut(s) | 66, 137, 487 |
| BsuTUI | ATCGAT | 1 cut(s) | 1171 |
| BtgI | CCRYGG | 1 cut(s) | 1195 |
| BtsCI | GGATG | 6 cut(s) | 277, 352, 465, 636, 1108, 1205 |
| BtsI | GCAGTG | 1 cut(s) | 828 |
| BtsIMutI | CAGTG | 4 cut(s) | 172, 523, 780, 828 |
| BveI | ACCTGC | 1 cut(s) | 383 |
| Cac8I | GCNNGC | 3 cut(s) | 135, 274, 1190 |
| CfoI | GCGC | 3 cut(s) | 125, 326, 875 |
| Cfr10I | RCCGGY | 1 cut(s) | 133 |
| Cfr13I | GGNCC | 2 cut(s) | 64, 65 |
| ClaI | ATCGAT | 1 cut(s) | 1171 |
| CseI | GACGC | 2 cut(s) | 139, 1022 |
| Csp6I | GTAC | 4 cut(s) | 49, 350, 514, 1248 |
| CviAII | CATG | 7 cut(s) | 153, 273, 343, 400, 707, 818, 1196 |
| CviQI | GTAC | 4 cut(s) | 49, 350, 514, 1248 |
| DdeI | CTNAG | 5 cut(s) | 126, 180, 669, 953, 1083 |
| DpnI | GATC | 7 cut(s) | 12, 33, 79, 685, 726, 1170, 1174 |
| DpnII | GATC | 7 cut(s) | 10, 31, 77, 683, 724, 1168, 1172 |
| EaeI | YGGCCR | 1 cut(s) | 135 |
| Ecl136II | GAGCTC | 1 cut(s) | 1192 |
| Eco130I | CCWWGG | 2 cut(s) | 138, 1195 |
| Eco24I | GRGCYC | 2 cut(s) | 68, 1194 |
| Eco32I | GATATC | 1 cut(s) | 654 |
| Eco47III | AGCGCT | 1 cut(s) | 124 |
| Eco53kI | GAGCTC | 1 cut(s) | 1192 |
| Eco57I | CTGAAG | 1 cut(s) | 173 |
| Eco88I | CYCGRG | 1 cut(s) | 928 |
| Eco91I | GGTNACC | 1 cut(s) | 142 |
| EcoICRI | GAGCTC | 1 cut(s) | 1192 |
| EcoO109I | RGGNCCY | 1 cut(s) | 64 |
| EcoO65I | GGTNACC | 1 cut(s) | 142 |
| EcoRI | GAATTC | 2 cut(s) | 254, 1271 |
| EcoRII | CCWGG | 5 cut(s) | 16, 73, 526, 610, 837 |
| EcoRV | GATATC | 1 cut(s) | 654 |
| EcoT14I | CCWWGG | 2 cut(s) | 138, 1195 |
| EcoT38I | GRGCYC | 2 cut(s) | 68, 1194 |
| ErhI | CCWWGG | 2 cut(s) | 138, 1195 |
| FaeI | CATG | 7 cut(s) | 156, 276, 346, 403, 710, 821, 1199 |
| FatI | CATG | 7 cut(s) | 152, 272, 342, 399, 706, 817, 1195 |
| FauNDI | CATATG | 1 cut(s) | 645 |
| FblI | GTMKAC | 1 cut(s) | 1072 |
| Fnu4HI | GCNGC | 2 cut(s) | 846, 1290 |
| FokI | GGATG | 6 cut(s) | 264, 359, 472, 623, 1095, 1212 |
| FriOI | GRGCYC | 2 cut(s) | 68, 1194 |
| Fsp4HI | GCNGC | 2 cut(s) | 846, 1290 |
| FspBI | CTAG | 3 cut(s) | 195, 495, 1068 |
| GlaI | GCGC | 3 cut(s) | 124, 325, 874 |
| GluI | GCNGC | 2 cut(s) | 846, 1290 |
| GsuI | CTGGAG | 1 cut(s) | 530 |
| HaeII | RGCGCY | 2 cut(s) | 126, 327 |
| HaeIII | GGCC | 3 cut(s) | 66, 137, 487 |
| HapII | CCGG | 2 cut(s) | 35, 134 |
| HgaI | GACGC | 2 cut(s) | 139, 1022 |
| HhaI | GCGC | 3 cut(s) | 125, 326, 875 |
| Hin1I | GRCGYC | 1 cut(s) | 131 |
| Hin1II | CATG | 7 cut(s) | 156, 276, 346, 403, 710, 821, 1199 |
| Hin6I | GCGC | 3 cut(s) | 123, 324, 873 |
| HinP1I | GCGC | 3 cut(s) | 123, 324, 873 |
| HincII | GTYRAC | 2 cut(s) | 315, 506 |
| HindII | GTYRAC | 2 cut(s) | 315, 506 |
| HindIII | AAGCTT | 1 cut(s) | 1212 |
| HinfI | GANTC | 4 cut(s) | 337, 803, 814, 951 |
| HpaI | GTTAAC | 1 cut(s) | 315 |
| HpaII | CCGG | 2 cut(s) | 35, 134 |
| HphI | GGTGA | 3 cut(s) | 154, 1032, 1220 |
| Hpy166II | GTNNAC | 5 cut(s) | 315, 506, 925, 950, 1073 |
| Hpy188I | TCNGA | 4 cut(s) | 129, 808, 956, 990 |
| Hpy188III | TCNNGA | 4 cut(s) | 35, 299, 930, 1092 |
| Hpy8I | GTNNAC | 5 cut(s) | 315, 506, 925, 950, 1073 |
| Hpy99I | CGWCG | 1 cut(s) | 87 |
| HpyAV | CCTTC | 4 cut(s) | 353, 1098, 1122, 1143 |
| HpyCH4III | ACNGT | 8 cut(s) | 518, 606, 739, 784, 893, 976, 1080, 1208 |
| HpyCH4IV | ACGT | 1 cut(s) | 659 |
| HpyCH4V | TGCA | 7 cut(s) | 468, 636, 767, 780, 821, 1145, 1289 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 405 |
| HpyF3I | CTNAG | 5 cut(s) | 126, 180, 669, 953, 1083 |
| HpySE526I | ACGT | 1 cut(s) | 659 |
| Hsp92I | GRCGYC | 1 cut(s) | 131 |
| Hsp92II | CATG | 7 cut(s) | 156, 276, 346, 403, 710, 821, 1199 |
| HspAI | GCGC | 3 cut(s) | 123, 324, 873 |
| Kpn2I | TCCGGA | 1 cut(s) | 34 |
| KroI | GCCGGC | 1 cut(s) | 133 |
| KroNI | GCCGGC | 1 cut(s) | 135 |
| KspAI | GTTAAC | 1 cut(s) | 315 |
| Kzo9I | GATC | 7 cut(s) | 10, 31, 77, 683, 724, 1168, 1172 |
| LmnI | GCTCC | 8 cut(s) | 100, 331, 665, 842, 870, 962, 1197, 1242 |
| Lsp1109I | GCAGC | 1 cut(s) | 832 |
| LweI | GCATC | 3 cut(s) | 174, 645, 884 |
| MaeI | CTAG | 3 cut(s) | 195, 495, 1068 |
| MaeII | ACGT | 1 cut(s) | 659 |
| MaeIII | GTNAC | 6 cut(s) | 142, 239, 800, 885, 970, 1034 |
| MalI | GATC | 7 cut(s) | 12, 33, 79, 685, 726, 1170, 1174 |
| MbiI | CCGCTC | 1 cut(s) | 334 |
| MboI | GATC | 7 cut(s) | 10, 31, 77, 683, 724, 1168, 1172 |
| MboII | GAAGA | 7 cut(s) | 5, 52, 96, 99, 108, 573, 632 |
| MfeI | CAATTG | 1 cut(s) | 966 |
| MflI | RGATCY | 3 cut(s) | 10, 77, 683 |
| MhlI | GDGCHC | 2 cut(s) | 68, 1194 |
| MluCI | AATT | 4 cut(s) | 254, 451, 966, 1271 |
| MluI | ACGCGT | 1 cut(s) | 1055 |
| MlyI | GAGTC | 3 cut(s) | 797, 823, 945 |
| MmeI | TCCRAC | 1 cut(s) | 409 |
| MnlI | CCTC | 7 cut(s) | 228, 244, 498, 514, 713, 1233, 1253 |
| MroI | TCCGGA | 1 cut(s) | 34 |
| MroNI | GCCGGC | 1 cut(s) | 133 |
| MseI | TTAA | 4 cut(s) | 314, 450, 699, 743 |
| MslI | CAYNNNNRTG | 2 cut(s) | 271, 1127 |
| MspCI | CTTAAG | 1 cut(s) | 742 |
| MspI | CCGG | 2 cut(s) | 35, 134 |
| MspR9I | CCNGG | 5 cut(s) | 18, 75, 528, 612, 839 |
| MunI | CAATTG | 1 cut(s) | 966 |
| Mva1269I | GAATGC | 1 cut(s) | 1035 |
| MvaI | CCWGG | 5 cut(s) | 18, 75, 528, 612, 839 |
| MvnI | CGCG | 1 cut(s) | 1057 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 405 |
| NaeI | GCCGGC | 1 cut(s) | 135 |
| NcoI | CCATGG | 1 cut(s) | 1195 |
| NdeI | CATATG | 1 cut(s) | 645 |
| NdeII | GATC | 7 cut(s) | 10, 31, 77, 683, 724, 1168, 1172 |
| NgoMIV | GCCGGC | 1 cut(s) | 133 |
| NlaIII | CATG | 7 cut(s) | 156, 276, 346, 403, 710, 821, 1199 |
| NlaIV | GGNNCC | 3 cut(s) | 66, 525, 832 |
| NmuCI | GTSAC | 3 cut(s) | 142, 800, 1034 |
| NspI | RCATGY | 1 cut(s) | 276 |
| PaeI | GCATGC | 1 cut(s) | 276 |
| PaqCI | CACCTGC | 1 cut(s) | 383 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1168 |
| PctI | GAATGC | 1 cut(s) | 1035 |
| PdiI | GCCGGC | 1 cut(s) | 135 |
| PfeI | GAWTC | 1 cut(s) | 337 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 283 |
| PkrI | GCNGC | 2 cut(s) | 847, 1291 |
| PleI | GAGTC | 3 cut(s) | 797, 822, 945 |
| PpsI | GAGTC | 3 cut(s) | 797, 822, 945 |
| Psp124BI | GAGCTC | 1 cut(s) | 1194 |
| Psp1406I | AACGTT | 1 cut(s) | 659 |
| Psp6I | CCWGG | 5 cut(s) | 16, 73, 526, 610, 837 |
| PspEI | GGTNACC | 1 cut(s) | 142 |
| PspGI | CCWGG | 5 cut(s) | 16, 73, 526, 610, 837 |
| PspN4I | GGNNCC | 3 cut(s) | 66, 525, 832 |
| PspOMI | GGGCCC | 1 cut(s) | 64 |
| PspPI | GGNCC | 2 cut(s) | 64, 65 |
| PsuI | RGATCY | 3 cut(s) | 10, 77, 683 |
| RsaI | GTAC | 4 cut(s) | 50, 351, 515, 1249 |
| RsaNI | GTAC | 4 cut(s) | 49, 350, 514, 1248 |
| RseI | CAYNNNNRTG | 2 cut(s) | 271, 1127 |
| SacI | GAGCTC | 1 cut(s) | 1194 |
| SaqAI | TTAA | 4 cut(s) | 314, 450, 699, 743 |
| SatI | GCNGC | 2 cut(s) | 846, 1290 |
| Sau3AI | GATC | 7 cut(s) | 10, 31, 77, 683, 724, 1168, 1172 |
| Sau96I | GGNCC | 2 cut(s) | 64, 65 |
| SchI | GAGTC | 3 cut(s) | 797, 823, 945 |
| ScrFI | CCNGG | 5 cut(s) | 18, 75, 528, 612, 839 |
| SduI | GDGCHC | 2 cut(s) | 68, 1194 |
| SfaNI | GCATC | 3 cut(s) | 174, 645, 884 |
| SfcI | CTRYAG | 1 cut(s) | 792 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 271, 1127 |
| SmlI | CTYRAG | 1 cut(s) | 742 |
| SmoI | CTYRAG | 1 cut(s) | 742 |
| SpeI | ACTAGT | 1 cut(s) | 1067 |
| SphI | GCATGC | 1 cut(s) | 276 |
| Sse9I | AATT | 4 cut(s) | 254, 451, 966, 1271 |
| SsiI | CCGC | 2 cut(s) | 207, 334 |
| SspI | AATATT | 1 cut(s) | 754 |
| SspMI | CTAG | 3 cut(s) | 195, 495, 1068 |
| SstI | GAGCTC | 1 cut(s) | 1194 |
| StyD4I | CCNGG | 5 cut(s) | 16, 73, 526, 610, 837 |
| StyI | CCWWGG | 2 cut(s) | 138, 1195 |
| TaaI | ACNGT | 8 cut(s) | 518, 606, 739, 784, 893, 976, 1080, 1208 |
| TaiI | ACGT | 1 cut(s) | 662 |
| TaqI | TCGA | 1 cut(s) | 1171 |
| TasI | AATT | 4 cut(s) | 254, 451, 966, 1271 |
| TatI | WGTACW | 3 cut(s) | 349, 513, 1247 |
| TfiI | GAWTC | 1 cut(s) | 337 |
| Tru1I | TTAA | 4 cut(s) | 314, 450, 699, 743 |
| Tru9I | TTAA | 4 cut(s) | 314, 450, 699, 743 |
| TscAI | CASTG | 4 cut(s) | 172, 523, 787, 828 |
| TseFI | GTSAC | 3 cut(s) | 142, 800, 1034 |
| TseI | GCWGC | 2 cut(s) | 845, 1289 |
| Tsp45I | GTSAC | 3 cut(s) | 142, 800, 1034 |
| TspDTI | ATGAA | 4 cut(s) | 416, 476, 723, 1125 |
| TspGWI | ACGGA | 1 cut(s) | 392 |
| TspRI | CASTG | 4 cut(s) | 172, 523, 787, 828 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 283 |
| Vha464I | CTTAAG | 1 cut(s) | 742 |
| XapI | RAATTY | 2 cut(s) | 254, 1271 |
| XceI | RCATGY | 1 cut(s) | 276 |
| XmiI | GTMKAC | 1 cut(s) | 1072 |
| XspI | CTAG | 3 cut(s) | 195, 495, 1068 |