Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003598

Physical Location & Seq

Genomic Coordinates Forward (+)

15736100 .. 15740263

Gene Structure 4164 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ30165

Sequence Viewer

CDS Protein Promoter (2k)

Length: 930 bp

ATGATCTTTCTGGGTTTTTTTTATCTTCCTGGGTTTTATTATGATGCGGAGAAGAATAGGTACTTCCCCAACAAGGGCCCAGTACCGGGTTCTCGTAGTACTGCTGCTTCTTCTAGTGCTCAGAAACTGAACCAGGTGCATTGGGTGTTCTGCATTTGGGCCCAAGTTCATGAAGCCAACAAATGTAAGCTAACAAAAGTAAGAACTTCTAAGCTGCTTCAGGCTAGGGAGTTATATGGTAATGTCATTGCTTCCAGTAAAGGGAGGTGCAACTTCAAGGAGGAATTCCAAAAGGCACAAGCATCCCATCCTGTGGTTTGGAAGTATCAGGGAACAAACAAGCTAGGTGATGGTGCTTTGGAGCGGATAAACATTGATGTACAGACAGGAGAGGGTTTAACTGGTACAGATTTTTCTCTTAGCAGGTGGCAGAAATGGCTCTTTAAGTACATTTTATTTGAATTTGGAAAAGTCGGGCAGGGTTTTCATTATGGGATGAAATGCTTGCCAGATCTTGTCTGGCCTCTCTTAAACAAAAGTCAAGTAGAATGTAGAAAAGCGCCTGGGCACATATGGAGACCAGCTCAAAATACACCACAGATGTCATCGAGTGTATCTTGTATAAAAACATTTGGCAAGCACAGCACAGAAAATGACGGTTCTAGCGTCCAGAATGCTCTGGTATCTACGCTAGGAGCTGAGGACCGTGGTGGATCACTTTTTGTTATTAACCTTACTGAACTCTTAGATTTTCGTCCAAATAGATCTATCTTAAGGCGGAACATTGATGAAGTTGCAACTTTCAACTGCACTGTTTGGACCGCAGATTGTAGATCTGATGGGAGTCCTGCAGTGATTGGCAAGAACCAATCTGGGAGCTGCTTTGGTAGATCTGGAAACTGGGGTGAAATCATGGCTGCTGCGTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005682 GO:0006139 GO:0006396 GO:0006464 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0019538 GO:0030532 GO:0031461 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043687 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0071011 GO:0071013 GO:0071704 GO:0080008 GO:0090304 GO:0097159 GO:0097525 GO:0120114 GO:1901360 GO:1901363 GO:1901564 GO:1902494 GO:1990234 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

309

Amino Acids

34.54

Weight (kDa)

9.31

Isoelectric Point (pI)

48.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003598)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G17370 AT5G17370
fragaria_vesca	FvH4_3g13240 FvH4_3g13240 FvH4_3g13240 FvH4_3g13240 FvH4_3g13240
malus_domestica	MD05G1243800.v1.1
prunus_persica	Prupe.4G119800_v2.0.a1 Prupe.4G119800_v2.0.a1 Prupe.4G119800_v2.0.a1 Prupe.4G119800_v2.0.a1
pyrus_communis	pycom05g22030 pycom10g18960
rosa_chinensis	RchiOBHm_Chr5g0021601 RchiOBHm_Chr5g0021611 RchiOBHm_Chr5g0021701
rosa_laevigata	RLG00000032617
rosa_multiflora	Rmu_sc0009984.1_g000013 Rmu_sc0016972.1_g000002
rosa_roxburghii	Rroxscaffold_1G00057050 Rroxscaffold_2G00125890 Rroxscaffold_3G00228540 Rroxscaffold_3G00229610 Rroxscaffold_4G00317430
rosa_rugosa	Rorug05G0067600 Rorug05G0067700 Rorug05G0067800
rosa_samantha	Rh5AG157000 Rh5BG156500 Rh5CG170800 Rh5DG156800
rosa_wichuraiana	Rw0G000530 Rw0G007040 Rw5G013950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	414
Acc36I	ACCTGC	1 cut(s)	414
AccB7I	CCANNNNNTGG	1 cut(s)	313
AccBSI	CCGCTC	1 cut(s)	364
AciI	CCGC	4 cut(s)	47, 364, 778, 822
AclWI	GGATC	1 cut(s)	721
AcsI	RAATTY	2 cut(s)	284, 461
AcuI	CTGAAG	1 cut(s)	203
AfaI	GTAC	6 cut(s)	62, 84, 100, 381, 406, 449
AfiI	CCNNNNNNNGG	6 cut(s)	73, 74, 85, 86, 261, 313
AflII	CTTAAG	1 cut(s)	772
AgsI	TTSAA	3 cut(s)	277, 461, 805
AjnI	CCWGG	3 cut(s)	28, 132, 562
AluBI	AGCT	6 cut(s)	190, 214, 343, 584, 698, 879
AluI	AGCT	6 cut(s)	190, 214, 343, 584, 698, 879
Alw21I	GWGCWC	1 cut(s)	121
Alw26I	GTCTC	1 cut(s)	571
AlwI	GGATC	1 cut(s)	721
AlwNI	CAGNNNCTG	1 cut(s)	127
AoxI	GGCC	3 cut(s)	76, 159, 521
ApaI	GGGCCC	2 cut(s)	80, 163
ApeKI	GCWGC	5 cut(s)	104, 214, 879, 917, 920
ApoI	RAATTY	2 cut(s)	284, 461
AspLEI	GCGC	1 cut(s)	562
AspS9I	GGNCC	6 cut(s)	76, 77, 159, 160, 703, 819
AsuC2I	CCSGG	1 cut(s)	87
AsuHPI	GGTGA	2 cut(s)	359, 917
AvaII	GGWCC	2 cut(s)	703, 819
BaeGI	GKGCMC	3 cut(s)	80, 163, 570
BanII	GRGCYC	2 cut(s)	80, 163
BarI	GAAGNNNNNNTAC	4 cut(s)	44, 76, 91, 123
Bbv12I	GWGCWC	1 cut(s)	121
BbvCI	CCTCAGC	1 cut(s)	699
BbvI	GCAGC	5 cut(s)	91, 201, 866, 904, 907
BccI	CCATC	3 cut(s)	315, 344, 833
BciT130I	CCWGG	3 cut(s)	30, 134, 564
BcnI	CCSGG	1 cut(s)	87
BcoDI	GTCTC	1 cut(s)	571
BfaI	CTAG	5 cut(s)	114, 225, 344, 663, 692
BfmI	CTRYAG	1 cut(s)	849
BfoI	RGCGCY	1 cut(s)	563
BfrI	CTTAAG	1 cut(s)	772
BfuAI	ACCTGC	1 cut(s)	414
BglII	AGATCT	4 cut(s)	511, 764, 833, 890
BisI	GCNGC	5 cut(s)	105, 215, 880, 918, 921
BlsI	GCNGC	5 cut(s)	106, 216, 881, 919, 922
BmcAI	AGTACT	1 cut(s)	100
Bme1390I	CCNGG	4 cut(s)	30, 87, 134, 564
Bme18I	GGWCC	2 cut(s)	703, 819
BmgT120I	GGNCC	6 cut(s)	76, 77, 159, 160, 703, 819
BmiI	GGNNCC	2 cut(s)	78, 161
BmrFI	CCNGG	4 cut(s)	30, 87, 134, 564
BmrI	ACTGGG	2 cut(s)	74, 910
BmsI	GCATC	2 cut(s)	34, 311
BmuI	ACTGGG	2 cut(s)	74, 910
BplI	GAGNNNNNCTC	2 cut(s)	568, 600
Bpu10I	CCTNAGC	1 cut(s)	699
BpuMI	CCSGG	1 cut(s)	87
BsaI	GGTCTC	1 cut(s)	571
BsaJI	CCNNGG	3 cut(s)	29, 563, 706
Bsc4I	CCNNNNNNNGG	6 cut(s)	73, 74, 85, 86, 261, 313
Bse1I	ACTGG	4 cut(s)	80, 255, 406, 905
Bse3DI	GCAATG	1 cut(s)	246
BseBI	CCWGG	3 cut(s)	30, 134, 564
BseDI	CCNNGG	3 cut(s)	29, 563, 706
BseGI	GGATG	3 cut(s)	302, 307, 501
BseLI	CCNNNNNNNGG	6 cut(s)	73, 74, 85, 86, 261, 313
BseMI	GCAATG	1 cut(s)	246
BseMII	CTCAG	2 cut(s)	134, 690
BseNI	ACTGG	4 cut(s)	80, 255, 406, 905
BseSI	GKGCMC	3 cut(s)	80, 163, 570
BseXI	GCAGC	5 cut(s)	91, 201, 866, 904, 907
BsgI	GTGCAG	1 cut(s)	793
BshFI	GGCC	3 cut(s)	78, 161, 523
BsiHKAI	GWGCWC	1 cut(s)	121
BsiSI	CCGG	1 cut(s)	86
BslI	CCNNNNNNNGG	6 cut(s)	73, 74, 85, 86, 261, 313
BsmAI	GTCTC	1 cut(s)	571
BsmI	GAATGC	1 cut(s)	679
BsnI	GGCC	3 cut(s)	78, 161, 523
Bso31I	GGTCTC	1 cut(s)	571
Bsp120I	GGGCCC	2 cut(s)	76, 159
Bsp1286I	GDGCHC	4 cut(s)	80, 121, 163, 570
Bsp1407I	TGTACA	1 cut(s)	379
Bsp143I	GATC	6 cut(s)	3, 511, 713, 764, 833, 890
BspACI	CCGC	4 cut(s)	47, 364, 778, 822
BspANI	GGCC	3 cut(s)	78, 161, 523
BspCNI	CTCAG	2 cut(s)	133, 691
BspHI	TCATGA	1 cut(s)	169
BspLI	GGNNCC	2 cut(s)	78, 161
BspMAI	CTGCAG	1 cut(s)	853
BspMI	ACCTGC	1 cut(s)	414
BspPI	GGATC	1 cut(s)	721
BspTI	CTTAAG	1 cut(s)	772
BspTNI	GGTCTC	1 cut(s)	571
BsrBI	CCGCTC	1 cut(s)	364
BsrDI	GCAATG	1 cut(s)	246
BsrGI	TGTACA	1 cut(s)	379
BsrI	ACTGG	4 cut(s)	80, 255, 406, 905
BssECI	CCNNGG	3 cut(s)	29, 563, 706
BssMI	GATC	6 cut(s)	3, 511, 713, 764, 833, 890
Bst2UI	CCWGG	3 cut(s)	30, 134, 564
Bst4CI	ACNGT	3 cut(s)	659, 707, 814
BstAFI	CTTAAG	1 cut(s)	772
BstAUI	TGTACA	1 cut(s)	379
BstC8I	GCNNGC	2 cut(s)	506, 638
BstDEI	CTNAG	5 cut(s)	120, 210, 419, 699, 745
BstDSI	CCRYGG	1 cut(s)	706
BstF5I	GGATG	3 cut(s)	302, 307, 501
BstH2I	RGCGCY	1 cut(s)	563
BstHHI	GCGC	1 cut(s)	562
BstKTI	GATC	6 cut(s)	6, 514, 716, 767, 836, 893
BstMAI	GTCTC	1 cut(s)	571
BstMBI	GATC	6 cut(s)	3, 511, 713, 764, 833, 890
BstMWI	GCNNNNNNNGC	2 cut(s)	436, 642
BstNI	CCWGG	3 cut(s)	30, 134, 564
BstSCI	CCNGG	4 cut(s)	28, 85, 132, 562
BstSFI	CTRYAG	1 cut(s)	849
BstSLI	GKGCMC	3 cut(s)	80, 163, 570
BstV1I	GCAGC	5 cut(s)	91, 201, 866, 904, 907
BstX2I	RGATCY	4 cut(s)	511, 764, 833, 890
BstYI	RGATCY	4 cut(s)	511, 764, 833, 890
BsuRI	GGCC	3 cut(s)	78, 161, 523
BtgI	CCRYGG	1 cut(s)	706
BtsCI	GGATG	3 cut(s)	302, 307, 501
BtsI	GCAGTG	1 cut(s)	858
BtsIMutI	CAGTG	2 cut(s)	810, 858
BveI	ACCTGC	1 cut(s)	414
Cac8I	GCNNGC	2 cut(s)	506, 638
CaiI	CAGNNNCTG	1 cut(s)	127
CciI	TCATGA	1 cut(s)	169
CfoI	GCGC	1 cut(s)	562
Cfr13I	GGNCC	6 cut(s)	76, 77, 159, 160, 703, 819
CseI	GACGC	1 cut(s)	655
CsiI	ACCWGGT	1 cut(s)	132
Csp6I	GTAC	6 cut(s)	61, 83, 99, 380, 405, 448
CviAII	CATG	2 cut(s)	170, 913
CviQI	GTAC	6 cut(s)	61, 83, 99, 380, 405, 448
DdeI	CTNAG	5 cut(s)	120, 210, 419, 699, 745
DpnI	GATC	6 cut(s)	5, 513, 715, 766, 835, 892
DpnII	GATC	6 cut(s)	3, 511, 713, 764, 833, 890
EciI	GGCGGA	1 cut(s)	793
Eco24I	GRGCYC	2 cut(s)	80, 163
Eco31I	GGTCTC	1 cut(s)	571
Eco47I	GGWCC	2 cut(s)	703, 819
Eco57I	CTGAAG	1 cut(s)	203
EcoO109I	RGGNCCY	1 cut(s)	76
EcoRI	GAATTC	1 cut(s)	284
EcoRII	CCWGG	3 cut(s)	28, 132, 562
EcoT38I	GRGCYC	2 cut(s)	80, 163
FaeI	CATG	2 cut(s)	173, 916
FaiI	YATR	9 cut(s)	42, 171, 235, 237, 492, 572, 574, 623, 914
FatI	CATG	2 cut(s)	169, 912
FauNDI	CATATG	1 cut(s)	572
Fnu4HI	GCNGC	5 cut(s)	105, 215, 880, 918, 921
FokI	GGATG	3 cut(s)	289, 294, 508
FriOI	GRGCYC	2 cut(s)	80, 163
Fsp4HI	GCNGC	5 cut(s)	105, 215, 880, 918, 921
FspBI	CTAG	5 cut(s)	114, 225, 344, 663, 692
GlaI	GCGC	1 cut(s)	561
GluI	GCNGC	5 cut(s)	105, 215, 880, 918, 921
HaeII	RGCGCY	1 cut(s)	563
HaeIII	GGCC	3 cut(s)	78, 161, 523
HapII	CCGG	1 cut(s)	86
HgaI	GACGC	1 cut(s)	655
HhaI	GCGC	1 cut(s)	562
Hin1II	CATG	2 cut(s)	173, 916
Hin6I	GCGC	1 cut(s)	560
HinP1I	GCGC	1 cut(s)	560
HinfI	GANTC	1 cut(s)	844
HpaII	CCGG	1 cut(s)	86
HphI	GGTGA	2 cut(s)	359, 917
Hpy188I	TCNGA	2 cut(s)	123, 838
Hpy188III	TCNNGA	3 cut(s)	170, 670, 894
HpyCH4III	ACNGT	3 cut(s)	659, 707, 814
HpyCH4V	TGCA	6 cut(s)	139, 153, 270, 797, 810, 851
HpyF10VI	GCNNNNNNNGC	2 cut(s)	436, 642
HpyF3I	CTNAG	5 cut(s)	120, 210, 419, 699, 745
Hsp92II	CATG	2 cut(s)	173, 916
HspAI	GCGC	1 cut(s)	560
Kzo9I	GATC	6 cut(s)	3, 511, 713, 764, 833, 890
LmnI	GCTCC	3 cut(s)	361, 695, 876
Lsp1109I	GCAGC	5 cut(s)	91, 201, 866, 904, 907
LweI	GCATC	2 cut(s)	34, 311
MabI	ACCWGGT	1 cut(s)	132
MaeI	CTAG	5 cut(s)	114, 225, 344, 663, 692
MalI	GATC	6 cut(s)	5, 513, 715, 766, 835, 892
MbiI	CCGCTC	1 cut(s)	364
MboI	GATC	6 cut(s)	3, 511, 713, 764, 833, 890
MboII	GAAGA	3 cut(s)	17, 64, 102
MflI	RGATCY	4 cut(s)	511, 764, 833, 890
MhlI	GDGCHC	4 cut(s)	80, 121, 163, 570
MluCI	AATT	2 cut(s)	284, 461
MlyI	GAGTC	1 cut(s)	853
MnlI	CCTC	5 cut(s)	258, 274, 385, 534, 694
MseI	TTAA	5 cut(s)	398, 444, 530, 729, 773
MspCI	CTTAAG	1 cut(s)	772
MspI	CCGG	1 cut(s)	86
MspR9I	CCNGG	4 cut(s)	30, 87, 134, 564
Mva1269I	GAATGC	1 cut(s)	679
MvaI	CCWGG	3 cut(s)	30, 134, 564
MwoI	GCNNNNNNNGC	2 cut(s)	436, 642
NciI	CCSGG	1 cut(s)	87
NdeI	CATATG	1 cut(s)	572
NdeII	GATC	6 cut(s)	3, 511, 713, 764, 833, 890
NlaIII	CATG	2 cut(s)	173, 916
NlaIV	GGNNCC	2 cut(s)	78, 161
PagI	TCATGA	1 cut(s)	169
PaqCI	CACCTGC	1 cut(s)	414
PcsI	WCGNNNNNNNCGW	1 cut(s)	663
PctI	GAATGC	1 cut(s)	679
PflMI	CCANNNNNTGG	1 cut(s)	313
PkrI	GCNGC	5 cut(s)	106, 216, 881, 919, 922
PleI	GAGTC	1 cut(s)	852
PpsI	GAGTC	1 cut(s)	852
Psp6I	CCWGG	3 cut(s)	28, 132, 562
PspGI	CCWGG	3 cut(s)	28, 132, 562
PspN4I	GGNNCC	2 cut(s)	78, 161
PspOMI	GGGCCC	2 cut(s)	76, 159
PspPI	GGNCC	6 cut(s)	76, 77, 159, 160, 703, 819
PstI	CTGCAG	1 cut(s)	853
PstNI	CAGNNNCTG	1 cut(s)	127
PsuI	RGATCY	4 cut(s)	511, 764, 833, 890
RsaI	GTAC	6 cut(s)	62, 84, 100, 381, 406, 449
RsaNI	GTAC	6 cut(s)	61, 83, 99, 380, 405, 448
SaqAI	TTAA	5 cut(s)	398, 444, 530, 729, 773
SatI	GCNGC	5 cut(s)	105, 215, 880, 918, 921
Sau3AI	GATC	6 cut(s)	3, 511, 713, 764, 833, 890
Sau96I	GGNCC	6 cut(s)	76, 77, 159, 160, 703, 819
ScaI	AGTACT	1 cut(s)	100
SchI	GAGTC	1 cut(s)	853
ScrFI	CCNGG	4 cut(s)	30, 87, 134, 564
SduI	GDGCHC	4 cut(s)	80, 121, 163, 570
SexAI	ACCWGGT	1 cut(s)	132
SfaNI	GCATC	2 cut(s)	34, 311
SfcI	CTRYAG	1 cut(s)	849
SinI	GGWCC	2 cut(s)	703, 819
SmlI	CTYRAG	1 cut(s)	772
SmoI	CTYRAG	1 cut(s)	772
Sse9I	AATT	2 cut(s)	284, 461
SsiI	CCGC	4 cut(s)	47, 364, 778, 822
SspMI	CTAG	5 cut(s)	114, 225, 344, 663, 692
StyD4I	CCNGG	4 cut(s)	28, 85, 132, 562
TaaI	ACNGT	3 cut(s)	659, 707, 814
TaqI	TCGA	1 cut(s)	608
TasI	AATT	2 cut(s)	284, 461
TatI	WGTACW	3 cut(s)	98, 379, 447
Tru1I	TTAA	5 cut(s)	398, 444, 530, 729, 773
Tru9I	TTAA	5 cut(s)	398, 444, 530, 729, 773
TscAI	CASTG	2 cut(s)	817, 858
TseI	GCWGC	5 cut(s)	104, 214, 879, 917, 920
TspDTI	ATGAA	5 cut(s)	158, 186, 476, 512, 804
TspRI	CASTG	2 cut(s)	817, 858
Van91I	CCANNNNNTGG	1 cut(s)	313
Vha464I	CTTAAG	1 cut(s)	772
VpaK11BI	GGWCC	2 cut(s)	703, 819
XapI	RAATTY	2 cut(s)	284, 461
XcmI	CCANNNNNNNNNTGG	1 cut(s)	516
XspI	CTAG	5 cut(s)	114, 225, 344, 663, 692
ZrmI	AGTACT	1 cut(s)	100

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.