Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0003598

Physical Location & Seq

Genomic Coordinates Reverse (-)

22180107 .. 22180829

Gene Structure 723 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g18960.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 306 bp

ATGGTGAAGCTTTACCACCAACGCCTAATCCAAAGAGGAGCTGTACAATCTTACGAGGGGCATGTGAATTCCGATACTCGTTTGCTGCTTGACGTTTTCTTATATATTTTTCTTTTAGGCCGAGAGGACCGCAATTTACGACTTTGGAGTATTAAGTCTGGTAAACTGCTTTTCGAGGATAAATTCTGTAACACAATCCCCTCAACTGTGTGCTGGCGAAGAGCTGAAAAAGGCGCGATTGTTGGTCTTTGCCTTCCGAGGAGTTTTGTTTTTATTTCCTTAGTAAAGATACAAACAGGTAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005682 GO:0006139 GO:0006396 GO:0006464 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0019538 GO:0030532 GO:0031461 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043687 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0071011 GO:0071013 GO:0071704 GO:0080008 GO:0090304 GO:0097159 GO:0097525 GO:0120114 GO:1901360 GO:1901363 GO:1901564 GO:1902494 GO:1990234 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

102

Amino Acids

11.74

Weight (kDa)

9.95

Isoelectric Point (pI)

26.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0003598)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G17370 AT5G17370
fragaria_vesca	FvH4_3g13240 FvH4_3g13240 FvH4_3g13240 FvH4_3g13240 FvH4_3g13240
malus_domestica	MD05G1243800.v1.1
prunus_persica	Prupe.4G119800_v2.0.a1 Prupe.4G119800_v2.0.a1 Prupe.4G119800_v2.0.a1 Prupe.4G119800_v2.0.a1
pyrus_communis	pycom05g22030 pycom10g18960
rosa_chinensis	RchiOBHm_Chr5g0021601 RchiOBHm_Chr5g0021611 RchiOBHm_Chr5g0021701
rosa_laevigata	RLG00000032617
rosa_multiflora	Rmu_sc0009984.1_g000013 Rmu_sc0016972.1_g000002
rosa_roxburghii	Rroxscaffold_1G00057050 Rroxscaffold_2G00125890 Rroxscaffold_3G00228540 Rroxscaffold_3G00229610 Rroxscaffold_4G00317430
rosa_rugosa	Rorug05G0067600 Rorug05G0067700 Rorug05G0067800
rosa_samantha	Rh5AG157000 Rh5BG156500 Rh5CG170800 Rh5DG156800
rosa_wichuraiana	Rw0G000530 Rw0G007040 Rw5G013950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	236
AciI	CCGC	1 cut(s)	130
AcsI	RAATTY	2 cut(s)	67, 182
AfaI	GTAC	1 cut(s)	45
AluBI	AGCT	3 cut(s)	10, 41, 224
AluI	AGCT	3 cut(s)	10, 41, 224
AoxI	GGCC	1 cut(s)	118
ApeKI	GCWGC	1 cut(s)	85
ApoI	RAATTY	2 cut(s)	67, 182
AspLEI	GCGC	1 cut(s)	236
AspS9I	GGNCC	1 cut(s)	127
AsuHPI	GGTGA	1 cut(s)	16
AvaII	GGWCC	1 cut(s)	127
BbvI	GCAGC	1 cut(s)	72
BisI	GCNGC	1 cut(s)	86
BlsI	GCNGC	1 cut(s)	87
Bme18I	GGWCC	1 cut(s)	127
BmgT120I	GGNCC	1 cut(s)	127
BsaJI	CCNNGG	1 cut(s)	257
BseDI	CCNNGG	1 cut(s)	257
BseRI	GAGGAG	2 cut(s)	51, 274
BseXI	GCAGC	1 cut(s)	72
Bsh1236I	CGCG	1 cut(s)	236
BshFI	GGCC	1 cut(s)	120
BsnI	GGCC	1 cut(s)	120
Bsp1407I	TGTACA	1 cut(s)	43
BspACI	CCGC	1 cut(s)	130
BspANI	GGCC	1 cut(s)	120
BspFNI	CGCG	1 cut(s)	236
BspQI	GCTCTTC	1 cut(s)	214
BsrGI	TGTACA	1 cut(s)	43
BssECI	CCNNGG	1 cut(s)	257
Bst4CI	ACNGT	1 cut(s)	208
Bst6I	CTCTTC	1 cut(s)	214
BstAUI	TGTACA	1 cut(s)	43
BstC8I	GCNNGC	1 cut(s)	215
BstDEI	CTNAG	1 cut(s)	280
BstFNI	CGCG	1 cut(s)	236
BstHHI	GCGC	1 cut(s)	236
BstNSI	RCATGY	1 cut(s)	65
BstUI	CGCG	1 cut(s)	236
BstV1I	GCAGC	1 cut(s)	72
BsuRI	GGCC	1 cut(s)	120
Cac8I	GCNNGC	1 cut(s)	215
CfoI	GCGC	1 cut(s)	236
Cfr13I	GGNCC	1 cut(s)	127
Csp6I	GTAC	1 cut(s)	44
CviAII	CATG	1 cut(s)	62
CviJI	RGCY	4 cut(s)	10, 41, 120, 224
CviKI_1	RGCY	4 cut(s)	10, 41, 120, 224
CviQI	GTAC	1 cut(s)	44
DdeI	CTNAG	1 cut(s)	280
Eam1104I	CTCTTC	1 cut(s)	214
EarI	CTCTTC	1 cut(s)	214
Eco47I	GGWCC	1 cut(s)	127
EcoRI	GAATTC	1 cut(s)	67
FaeI	CATG	1 cut(s)	65
FaiI	YATR	3 cut(s)	63, 103, 105
FatI	CATG	1 cut(s)	61
Fnu4HI	GCNGC	1 cut(s)	86
Fsp4HI	GCNGC	1 cut(s)	86
GlaI	GCGC	1 cut(s)	235
GluI	GCNGC	1 cut(s)	86
HaeIII	GGCC	1 cut(s)	120
HhaI	GCGC	1 cut(s)	236
Hin1II	CATG	1 cut(s)	65
Hin6I	GCGC	1 cut(s)	234
HinP1I	GCGC	1 cut(s)	234
HindIII	AAGCTT	1 cut(s)	8
HphI	GGTGA	1 cut(s)	16
Hpy166II	GTNNAC	1 cut(s)	164
Hpy188I	TCNGA	2 cut(s)	73, 258
Hpy8I	GTNNAC	1 cut(s)	164
HpyAV	CCTTC	1 cut(s)	263
HpyCH4III	ACNGT	1 cut(s)	208
HpyCH4IV	ACGT	1 cut(s)	93
HpyF3I	CTNAG	1 cut(s)	280
HpySE526I	ACGT	1 cut(s)	93
Hsp92II	CATG	1 cut(s)	65
HspAI	GCGC	1 cut(s)	234
LguI	GCTCTTC	1 cut(s)	214
LmnI	GCTCC	1 cut(s)	38
LpnPI	CCDG	3 cut(s)	144, 199, 282
Lsp1109I	GCAGC	1 cut(s)	72
MaeII	ACGT	1 cut(s)	93
MaeIII	GTNAC	1 cut(s)	188
MboII	GAAGA	1 cut(s)	231
MluCI	AATT	3 cut(s)	67, 133, 182
MnlI	CCTC	6 cut(s)	29, 49, 118, 169, 211, 252
MseI	TTAA	1 cut(s)	153
MvnI	CGCG	1 cut(s)	236
NlaIII	CATG	1 cut(s)	65
NmeAIII	GCCGAG	1 cut(s)	146
NspI	RCATGY	1 cut(s)	65
PciSI	GCTCTTC	1 cut(s)	214
PkrI	GCNGC	1 cut(s)	87
PspPI	GGNCC	1 cut(s)	127
RsaI	GTAC	1 cut(s)	45
RsaNI	GTAC	1 cut(s)	44
SapI	GCTCTTC	1 cut(s)	214
SaqAI	TTAA	1 cut(s)	153
SatI	GCNGC	1 cut(s)	86
Sau96I	GGNCC	1 cut(s)	127
SetI	ASST	5 cut(s)	12, 43, 96, 226, 301
SinI	GGWCC	1 cut(s)	127
Sse9I	AATT	3 cut(s)	67, 133, 182
SsiI	CCGC	1 cut(s)	130
TaaI	ACNGT	1 cut(s)	208
TaiI	ACGT	1 cut(s)	96
TaqI	TCGA	1 cut(s)	174
TasI	AATT	3 cut(s)	67, 133, 182
TatI	WGTACW	1 cut(s)	43
Tru1I	TTAA	1 cut(s)	153
Tru9I	TTAA	1 cut(s)	153
TseI	GCWGC	1 cut(s)	85
VpaK11BI	GGWCC	1 cut(s)	127
XapI	RAATTY	2 cut(s)	67, 182
XceI	RCATGY	1 cut(s)	65

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.