Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003598

Physical Location & Seq

Genomic Coordinates Forward (+)

15740265 .. 15743242

Gene Structure 2978 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ30166

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ATGTTTTGGCACAACAACTTGTTCACTCGAAATGGAGCAATTGTAACGGTTGATGTTCATGAGAAACGGGAAGGATTTTCTGCAAGACATGCTAGTCATAGAATACGGCACTCACCTTTGGATAGCACTCCTGGAAAATCTAGTGAAAAATGGTTCAAGTTTGATGATCAGTACTTCTTGGCAAGCTCCATGGACGGAACGGTAAAGCTTTATGACCATCGCATAATCCAAAGAGGAGCTGTCCAAACTTATGAGGGGAATGTGAATTCCCATACTCGTTTGCAGCTTGGTGTTGATCCATCTGAGCGATTTTTTATATCAGGCGGAGAGGACTGCAATTTAAGACTTTGGAGTATAAAGTCAGGTGAACTGCTTTTTGAGGACAAGTTAACAAATACAGTCACCCCAACTGTGTGCTGGCAAAAAGCTGAAGCGTTTAAAGGATTGCAGGATGAAAGGCAAAAGCTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005682 GO:0006139 GO:0006396 GO:0006464 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0019538 GO:0030532 GO:0031461 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043687 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0071011 GO:0071013 GO:0071704 GO:0080008 GO:0090304 GO:0097159 GO:0097525 GO:0120114 GO:1901360 GO:1901363 GO:1901564 GO:1902494 GO:1990234 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

156

Amino Acids

17.99

Weight (kDa)

7.85

Isoelectric Point (pI)

27.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_DCAF4	PF23761	10 - 125	4.4e-13	DDB1- and CUL4-associated factor 4 beta-propeller domain
Beta-prop_THOC3	PF25174	46 - 123	4e-06	THOC3 beta-propeller domain
Beta-prop_WDR5	PF25175	51 - 134	2e-08	WDR5 beta-propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0003598)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G17370 AT5G17370
fragaria_vesca	FvH4_3g13240 FvH4_3g13240 FvH4_3g13240 FvH4_3g13240 FvH4_3g13240
malus_domestica	MD05G1243800.v1.1
prunus_persica	Prupe.4G119800_v2.0.a1 Prupe.4G119800_v2.0.a1 Prupe.4G119800_v2.0.a1 Prupe.4G119800_v2.0.a1
pyrus_communis	pycom05g22030 pycom10g18960
rosa_chinensis	RchiOBHm_Chr5g0021601 RchiOBHm_Chr5g0021611 RchiOBHm_Chr5g0021701
rosa_laevigata	RLG00000032617
rosa_multiflora	Rmu_sc0009984.1_g000013 Rmu_sc0016972.1_g000002
rosa_roxburghii	Rroxscaffold_1G00057050 Rroxscaffold_2G00125890 Rroxscaffold_3G00228540 Rroxscaffold_3G00229610 Rroxscaffold_4G00317430
rosa_rugosa	Rorug05G0067600 Rorug05G0067700 Rorug05G0067800
rosa_samantha	Rh5AG157000 Rh5BG156500 Rh5CG170800 Rh5DG156800
rosa_wichuraiana	Rw0G000530 Rw0G007040 Rw5G013950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	93
AciI	CCGC	1 cut(s)	324
AclWI	GGATC	1 cut(s)	290
AcsI	RAATTY	1 cut(s)	265
AcuI	CTGAAG	1 cut(s)	450
AfaI	GTAC	1 cut(s)	173
AgsI	TTSAA	1 cut(s)	157
AjnI	CCWGG	1 cut(s)	130
AluBI	AGCT	6 cut(s)	186, 208, 239, 286, 428, 466
AluI	AGCT	6 cut(s)	186, 208, 239, 286, 428, 466
AlwI	GGATC	1 cut(s)	290
ApeKI	GCWGC	1 cut(s)	283
ApoI	RAATTY	1 cut(s)	265
AsuHPI	GGTGA	3 cut(s)	105, 377, 394
BbvI	GCAGC	1 cut(s)	295
BccI	CCATC	2 cut(s)	225, 307
BceAI	ACGGC	1 cut(s)	122
BciT130I	CCWGG	1 cut(s)	132
BclI	TGATCA	1 cut(s)	166
BfaI	CTAG	2 cut(s)	93, 141
BisI	GCNGC	1 cut(s)	284
BlsI	GCNGC	1 cut(s)	285
BmcAI	AGTACT	1 cut(s)	173
Bme1390I	CCNGG	1 cut(s)	132
BmrFI	CCNGG	1 cut(s)	132
BsaJI	CCNNGG	1 cut(s)	189
BsaXI	ACNNNNNCTCC	2 cut(s)	27, 57
BseBI	CCWGG	1 cut(s)	132
BseDI	CCNNGG	1 cut(s)	189
BseGI	GGATG	1 cut(s)	457
BseMII	CTCAG	1 cut(s)	294
BseRI	GAGGAG	1 cut(s)	249
BseXI	GCAGC	1 cut(s)	295
Bsp143I	GATC	2 cut(s)	166, 295
Bsp19I	CCATGG	1 cut(s)	189
BspACI	CCGC	1 cut(s)	324
BspCNI	CTCAG	1 cut(s)	295
BspHI	TCATGA	1 cut(s)	58
BspPI	GGATC	1 cut(s)	290
BssECI	CCNNGG	1 cut(s)	189
BssMI	GATC	2 cut(s)	166, 295
BssT1I	CCWWGG	1 cut(s)	189
Bst2UI	CCWGG	1 cut(s)	132
Bst4CI	ACNGT	4 cut(s)	49, 202, 400, 412
BstAPI	GCANNNNNTGC	1 cut(s)	89
BstC8I	GCNNGC	2 cut(s)	184, 419
BstDEI	CTNAG	1 cut(s)	303
BstDSI	CCRYGG	1 cut(s)	189
BstF5I	GGATG	1 cut(s)	457
BstKTI	GATC	2 cut(s)	169, 298
BstMBI	GATC	2 cut(s)	166, 295
BstMWI	GCNNNNNNNGC	1 cut(s)	89
BstNI	CCWGG	1 cut(s)	132
BstNSI	RCATGY	1 cut(s)	92
BstSCI	CCNGG	1 cut(s)	130
BstV1I	GCAGC	1 cut(s)	295
BtgI	CCRYGG	1 cut(s)	189
BtgZI	GCGATG	1 cut(s)	203
BtsCI	GGATG	1 cut(s)	457
Cac8I	GCNNGC	2 cut(s)	184, 419
CciI	TCATGA	1 cut(s)	58
Csp6I	GTAC	1 cut(s)	172
CviAII	CATG	3 cut(s)	59, 89, 190
CviJI	RGCY	6 cut(s)	186, 208, 239, 286, 428, 466
CviKI_1	RGCY	6 cut(s)	186, 208, 239, 286, 428, 466
CviQI	GTAC	1 cut(s)	172
DdeI	CTNAG	1 cut(s)	303
DpnI	GATC	2 cut(s)	168, 297
DpnII	GATC	2 cut(s)	166, 295
DraI	TTTAAA	1 cut(s)	439
DrdI	GACNNNNNNGTC	1 cut(s)	93
DseDI	GACNNNNNNGTC	1 cut(s)	93
EciI	GGCGGA	1 cut(s)	339
Eco130I	CCWWGG	1 cut(s)	189
Eco57I	CTGAAG	1 cut(s)	450
EcoRI	GAATTC	1 cut(s)	265
EcoRII	CCWGG	1 cut(s)	130
EcoT14I	CCWWGG	1 cut(s)	189
ErhI	CCWWGG	1 cut(s)	189
FaeI	CATG	3 cut(s)	62, 92, 193
FatI	CATG	3 cut(s)	58, 88, 189
FbaI	TGATCA	1 cut(s)	166
Fnu4HI	GCNGC	1 cut(s)	284
FokI	GGATG	1 cut(s)	464
Fsp4HI	GCNGC	1 cut(s)	284
FspBI	CTAG	2 cut(s)	93, 141
GluI	GCNGC	1 cut(s)	284
Hin1II	CATG	3 cut(s)	62, 92, 193
HincII	GTYRAC	1 cut(s)	390
HindII	GTYRAC	1 cut(s)	390
HindIII	AAGCTT	1 cut(s)	206
HpaI	GTTAAC	1 cut(s)	390
HphI	GGTGA	3 cut(s)	105, 377, 394
Hpy166II	GTNNAC	3 cut(s)	24, 368, 390
Hpy188I	TCNGA	1 cut(s)	304
Hpy188III	TCNNGA	1 cut(s)	59
Hpy8I	GTNNAC	3 cut(s)	24, 368, 390
HpyAV	CCTTC	1 cut(s)	65
HpyCH4III	ACNGT	4 cut(s)	49, 202, 400, 412
HpyCH4V	TGCA	4 cut(s)	83, 283, 336, 448
HpyF10VI	GCNNNNNNNGC	1 cut(s)	89
HpyF3I	CTNAG	1 cut(s)	303
Hsp92II	CATG	3 cut(s)	62, 92, 193
Ksp22I	TGATCA	1 cut(s)	166
KspAI	GTTAAC	1 cut(s)	390
Kzo9I	GATC	2 cut(s)	166, 295
LmnI	GCTCC	3 cut(s)	35, 191, 236
LpnPI	CCDG	6 cut(s)	117, 144, 306, 348, 403, 434
Lsp1109I	GCAGC	1 cut(s)	295
MaeI	CTAG	2 cut(s)	93, 141
MaeIII	GTNAC	2 cut(s)	43, 400
MalI	GATC	2 cut(s)	168, 297
MboI	GATC	2 cut(s)	166, 295
MfeI	CAATTG	1 cut(s)	39
MluCI	AATT	3 cut(s)	39, 265, 337
MnlI	CCTC	4 cut(s)	227, 247, 322, 373
MseI	TTAA	3 cut(s)	341, 389, 438
MspR9I	CCNGG	1 cut(s)	132
MunI	CAATTG	1 cut(s)	39
MvaI	CCWGG	1 cut(s)	132
MwoI	GCNNNNNNNGC	1 cut(s)	89
NcoI	CCATGG	1 cut(s)	189
NdeII	GATC	2 cut(s)	166, 295
NlaIII	CATG	3 cut(s)	62, 92, 193
NmuCI	GTSAC	1 cut(s)	400
NspI	RCATGY	1 cut(s)	92
PagI	TCATGA	1 cut(s)	58
PfoI	TCCNGGA	1 cut(s)	130
PkrI	GCNGC	1 cut(s)	285
Psp6I	CCWGG	1 cut(s)	130
PspGI	CCWGG	1 cut(s)	130
RsaI	GTAC	1 cut(s)	173
RsaNI	GTAC	1 cut(s)	172
SaqAI	TTAA	3 cut(s)	341, 389, 438
SatI	GCNGC	1 cut(s)	284
Sau3AI	GATC	2 cut(s)	166, 295
ScaI	AGTACT	1 cut(s)	173
ScrFI	CCNGG	1 cut(s)	132
SetI	ASST	8 cut(s)	118, 188, 210, 241, 288, 367, 430, 468
Sse9I	AATT	3 cut(s)	39, 265, 337
SsiI	CCGC	1 cut(s)	324
SspMI	CTAG	2 cut(s)	93, 141
StyD4I	CCNGG	1 cut(s)	130
StyI	CCWWGG	1 cut(s)	189
TaaI	ACNGT	4 cut(s)	49, 202, 400, 412
TaqI	TCGA	1 cut(s)	28
TasI	AATT	3 cut(s)	39, 265, 337
TatI	WGTACW	1 cut(s)	171
Tru1I	TTAA	3 cut(s)	341, 389, 438
Tru9I	TTAA	3 cut(s)	341, 389, 438
TseFI	GTSAC	1 cut(s)	400
TseI	GCWGC	1 cut(s)	283
Tsp45I	GTSAC	1 cut(s)	400
TspDTI	ATGAA	2 cut(s)	47, 468
TspGWI	ACGGA	1 cut(s)	210
XapI	RAATTY	1 cut(s)	265
XceI	RCATGY	1 cut(s)	92
XcmI	CCANNNNNNNNNTGG	1 cut(s)	414
XspI	CTAG	2 cut(s)	93, 141
ZrmI	AGTACT	1 cut(s)	173

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.