Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0003598

Physical Location & Seq

Genomic Coordinates Reverse (-)

14100123 .. 14147494

Gene Structure 47372 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00229610.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1200 bp

ATGCTCCACATTCCCAACAATGATCTGGTAGCAAGCCATGCATCATGGAAAGCAAAAGAAAGACATTTTGGTTGTAAGAAAACGGGAAGGATTTTTTTTGCAAGACATGCTAGTCAGAGAATACGGCACTCACCTTTGGATAACACTCTTGGAAAATCTAGTGAAAAATGGTTCAAGCTTTCTGGAAATATACATCCTTCTCATACGACAAAAAATGCCTTCATCTATTGCATGGTAAAGCCGTATGACCATCGCATAATCCAAAGAGAAGCCGTCCAAACTTACGAGGCGCATGTGAATTCCCATACTCATTTGCAGCTTGGAGTTGATCCATCTGAGCGATTTTTCATATCAGGGTGGAGAGGACTGCAAGTTAAGACTTTGGAATATAAAGTCGGTGAACTGCTTTTTGAGGAGAAGCGATCGCAATCAACCACTTCGAAGGAGAGGAACTACTGGAGTAGCTTTTTGGAAAGAGAATTAATCTCACTAACTCAAGATGATAGGAGTGTGAGAGATTATGAGACGGAATTCTCAAGACTATTTTGGTTTAGGAGACGAATGGCTGATATTAGTAAATCCTGTGCAAATAGAGCAGATCTCCCTCTGAAGAATGGGACTTTGCTTCGGAGTCGGAGAAATCGACAGATCAACAATTCACTACGAGAAAGACAATCGTCAACGACGGCCAAGGCGGTCGATATGTCAATCCGTAGCTTTTACATACGTGTCTTGATTTCCGGTCAATTAGTTAGATTACTTTTTGATCCAATCCATAGTGTTTCAGCGATTGTTAGTTGGATCAGTCCAGTTCATAGATCTACTCTAGCCCCTTCCTACTTGCGTTGTCGTCCCCCCTCCTCCCAAAGTTTTAATGCGGACATGACTAGCGTTCTTATCTCATATGTTTATGAAAGCAGCCCTTGCTTCGGTGGTTTGGAGCAAAGGCTTCGTGGTAAAAGGTCGGGGAATGCATTACGGATGATGAGGTCAGCATCTCGGCATTCGAAAGCTGCCACTAATGTCTTTGTAAGAGGTGACCATTATTCTGCTCAACAACACTCAATCAAGGCTAAAGAGGAATGGAGGAGATTTCACCTCACCCGAATCTTCCTCAAGGAGATTTCTTCTCACTTGGATTTAACTCAAGTAGATTTCCAAACACTGTTGGAACAGAATTTAGTTTTTGAATATACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005682 GO:0006139 GO:0006396 GO:0006464 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0019538 GO:0030532 GO:0031461 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043687 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0071011 GO:0071013 GO:0071704 GO:0080008 GO:0090304 GO:0097159 GO:0097525 GO:0120114 GO:1901360 GO:1901363 GO:1901564 GO:1902494 GO:1990234 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

399

Amino Acids

46.46

Weight (kDa)

10.12

Isoelectric Point (pI)

53.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003598)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G17370 AT5G17370
fragaria_vesca	FvH4_3g13240 FvH4_3g13240 FvH4_3g13240 FvH4_3g13240 FvH4_3g13240
malus_domestica	MD05G1243800.v1.1
prunus_persica	Prupe.4G119800_v2.0.a1 Prupe.4G119800_v2.0.a1 Prupe.4G119800_v2.0.a1 Prupe.4G119800_v2.0.a1
pyrus_communis	pycom05g22030 pycom10g18960
rosa_chinensis	RchiOBHm_Chr5g0021601 RchiOBHm_Chr5g0021611 RchiOBHm_Chr5g0021701
rosa_laevigata	RLG00000032617
rosa_multiflora	Rmu_sc0009984.1_g000013 Rmu_sc0016972.1_g000002
rosa_roxburghii	Rroxscaffold_1G00057050 Rroxscaffold_2G00125890 Rroxscaffold_3G00228540 Rroxscaffold_3G00229610 Rroxscaffold_4G00317430
rosa_rugosa	Rorug05G0067600 Rorug05G0067700 Rorug05G0067800
rosa_samantha	Rh5AG157000 Rh5BG156500 Rh5CG170800 Rh5DG156800
rosa_wichuraiana	Rw0G000530 Rw0G007040 Rw5G013950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	111
AciI	CCGC	2 cut(s)	695, 878
AclWI	GGATC	3 cut(s)	323, 761, 809
AcoI	YGGCCR	1 cut(s)	687
AcsI	RAATTY	3 cut(s)	298, 530, 1177
AcuI	CTGAAG	1 cut(s)	629
AfiI	CCNNNNNNNGG	1 cut(s)	929
AflIII	ACRYGT	1 cut(s)	727
AgsI	TTSAA	2 cut(s)	175, 1190
AjuI	GAANNNNNNNTTGG	2 cut(s)	51, 83
AluBI	AGCT	5 cut(s)	178, 319, 465, 717, 1013
AluI	AGCT	5 cut(s)	178, 319, 465, 717, 1013
Alw26I	GTCTC	2 cut(s)	518, 550
AlwI	GGATC	3 cut(s)	323, 761, 809
AoxI	GGCC	1 cut(s)	687
ApeKI	GCWGC	3 cut(s)	316, 918, 1013
ApoI	RAATTY	3 cut(s)	298, 530, 1177
AseI	ATTAAT	1 cut(s)	482
AsiSI	GCGATCGC	1 cut(s)	425
AspLEI	GCGC	1 cut(s)	292
AsuHPI	GGTGA	5 cut(s)	123, 410, 1049, 1088, 1093
AsuII	TTCGAA	2 cut(s)	440, 1007
BbvI	GCAGC	3 cut(s)	328, 930, 1000
BccI	CCATC	2 cut(s)	258, 340
BceAI	ACGGC	4 cut(s)	140, 226, 257, 702
BcgI	CGANNNNNNTGC	2 cut(s)	932, 966
BcoDI	GTCTC	2 cut(s)	518, 550
BfaI	CTAG	4 cut(s)	111, 159, 827, 888
BglII	AGATCT	2 cut(s)	598, 818
BisI	GCNGC	3 cut(s)	317, 919, 1014
BlsI	GCNGC	3 cut(s)	318, 920, 1015
BmsI	GCATC	2 cut(s)	50, 1004
BoxI	GACNNNNGTC	1 cut(s)	676
BplI	GAGNNNNNCTC	2 cut(s)	585, 617
BpmI	CTGGAG	1 cut(s)	478
Bpu14I	TTCGAA	2 cut(s)	440, 1007
BpuEI	CTTGAG	4 cut(s)	480, 520, 1100, 1131
BsaAI	YACGTR	1 cut(s)	728
BsaBI	GATNNNNATC	1 cut(s)	427
BsaJI	CCNNGG	1 cut(s)	690
BsaWI	WCCGGW	1 cut(s)	740
Bsc4I	CCNNNNNNNGG	1 cut(s)	929
Bse1I	ACTGG	2 cut(s)	461, 809
Bse8I	GATNNNNATC	1 cut(s)	427
BseDI	CCNNGG	1 cut(s)	690
BseGI	GGATG	2 cut(s)	193, 987
BseJI	GATNNNNATC	1 cut(s)	427
BseLI	CCNNNNNNNGG	1 cut(s)	929
BseMII	CTCAG	1 cut(s)	327
BseNI	ACTGG	2 cut(s)	461, 809
BseRI	GAGGAG	3 cut(s)	428, 850, 1102
BseXI	GCAGC	3 cut(s)	328, 930, 1000
Bsh1285I	CGRYCG	2 cut(s)	425, 699
BshFI	GGCC	1 cut(s)	689
BsiEI	CGRYCG	2 cut(s)	425, 699
BsiSI	CCGG	1 cut(s)	741
BslFI	GGGAC	2 cut(s)	631, 837
BslI	CCNNNNNNNGG	1 cut(s)	929
BsmAI	GTCTC	2 cut(s)	518, 550
BsmBI	CGTCTC	2 cut(s)	518, 550
BsmFI	GGGAC	2 cut(s)	631, 837
BsmI	GAATGC	2 cut(s)	976, 1003
BsnI	GGCC	1 cut(s)	689
Bsp119I	TTCGAA	2 cut(s)	440, 1007
Bsp143I	GATC	8 cut(s)	22, 328, 422, 598, 648, 766, 801, 818
BspACI	CCGC	2 cut(s)	695, 878
BspANI	GGCC	1 cut(s)	689
BspCNI	CTCAG	1 cut(s)	328
BspPI	GGATC	3 cut(s)	323, 761, 809
BspT104I	TTCGAA	2 cut(s)	440, 1007
BsrI	ACTGG	2 cut(s)	461, 809
BssECI	CCNNGG	1 cut(s)	690
BssMI	GATC	8 cut(s)	22, 328, 422, 598, 648, 766, 801, 818
BssT1I	CCWWGG	1 cut(s)	690
Bst4CI	ACNGT	1 cut(s)	1167
BstAPI	GCANNNNNTGC	3 cut(s)	38, 107, 924
BstBAI	YACGTR	1 cut(s)	728
BstBI	TTCGAA	2 cut(s)	440, 1007
BstC8I	GCNNGC	1 cut(s)	34
BstDEI	CTNAG	1 cut(s)	336
BstEII	GGTNACC	1 cut(s)	1037
BstF5I	GGATG	2 cut(s)	193, 987
BstHHI	GCGC	1 cut(s)	292
BstKTI	GATC	8 cut(s)	25, 331, 425, 601, 651, 769, 804, 821
BstMAI	GTCTC	2 cut(s)	518, 550
BstMBI	GATC	8 cut(s)	22, 328, 422, 598, 648, 766, 801, 818
BstMCI	CGRYCG	2 cut(s)	425, 699
BstMWI	GCNNNNNNNGC	4 cut(s)	38, 107, 593, 924
BstNSI	RCATGY	2 cut(s)	110, 296
BstPAI	GACNNNNGTC	1 cut(s)	676
BstPI	GGTNACC	1 cut(s)	1037
BstV1I	GCAGC	3 cut(s)	328, 930, 1000
BstX2I	RGATCY	2 cut(s)	598, 818
BstYI	RGATCY	2 cut(s)	598, 818
BsuRI	GGCC	1 cut(s)	689
BtgZI	GCGATG	1 cut(s)	236
BtsCI	GGATG	2 cut(s)	193, 987
BtsIMutI	CAGTG	1 cut(s)	1163
Cac8I	GCNNGC	1 cut(s)	34
CfoI	GCGC	1 cut(s)	292
CviAII	CATG	7 cut(s)	38, 45, 107, 232, 293, 883, 1197
DdeI	CTNAG	1 cut(s)	336
DpnI	GATC	8 cut(s)	24, 330, 424, 600, 650, 768, 803, 820
DpnII	GATC	8 cut(s)	22, 328, 422, 598, 648, 766, 801, 818
DrdI	GACNNNNNNGTC	1 cut(s)	111
DseDI	GACNNNNNNGTC	1 cut(s)	111
EaeI	YGGCCR	1 cut(s)	687
Eco130I	CCWWGG	1 cut(s)	690
Eco57I	CTGAAG	1 cut(s)	629
Eco91I	GGTNACC	1 cut(s)	1037
EcoO65I	GGTNACC	1 cut(s)	1037
EcoRI	GAATTC	2 cut(s)	298, 530
EcoT14I	CCWWGG	1 cut(s)	690
EcoT22I	ATGCAT	2 cut(s)	43, 976
ErhI	CCWWGG	1 cut(s)	690
Esp3I	CGTCTC	2 cut(s)	518, 550
FaeI	CATG	7 cut(s)	41, 48, 110, 235, 296, 886, 1200
FalI	AAGNNNNNCTT	2 cut(s)	907, 939
FaqI	GGGAC	2 cut(s)	631, 837
FatI	CATG	7 cut(s)	37, 44, 106, 231, 292, 882, 1196
FauNDI	CATATG	1 cut(s)	904
Fnu4HI	GCNGC	3 cut(s)	317, 919, 1014
FokI	GGATG	2 cut(s)	180, 994
Fsp4HI	GCNGC	3 cut(s)	317, 919, 1014
FspBI	CTAG	4 cut(s)	111, 159, 827, 888
GlaI	GCGC	1 cut(s)	291
GluI	GCNGC	3 cut(s)	317, 919, 1014
GsuI	CTGGAG	1 cut(s)	478
HaeIII	GGCC	1 cut(s)	689
HapII	CCGG	1 cut(s)	741
HhaI	GCGC	1 cut(s)	292
Hin1II	CATG	7 cut(s)	41, 48, 110, 235, 296, 886, 1200
Hin6I	GCGC	1 cut(s)	290
HinP1I	GCGC	1 cut(s)	290
HincII	GTYRAC	1 cut(s)	681
HindII	GTYRAC	1 cut(s)	681
HindIII	AAGCTT	1 cut(s)	176
HinfI	GANTC	2 cut(s)	631, 1107
HpaII	CCGG	1 cut(s)	741
HphI	GGTGA	5 cut(s)	123, 410, 1049, 1088, 1093
Hpy166II	GTNNAC	2 cut(s)	401, 681
Hpy188I	TCNGA	5 cut(s)	117, 337, 609, 630, 636
Hpy188III	TCNNGA	4 cut(s)	183, 497, 537, 733
Hpy8I	GTNNAC	2 cut(s)	401, 681
Hpy99I	CGWCG	1 cut(s)	688
HpyAV	CCTTC	5 cut(s)	81, 207, 229, 436, 843
HpyCH4III	ACNGT	1 cut(s)	1167
HpyCH4IV	ACGT	1 cut(s)	727
HpyCH4V	TGCA	7 cut(s)	41, 101, 231, 316, 370, 587, 974
HpyF10VI	GCNNNNNNNGC	4 cut(s)	38, 107, 593, 924
HpyF3I	CTNAG	1 cut(s)	336
HpySE526I	ACGT	1 cut(s)	727
Hsp92II	CATG	7 cut(s)	41, 48, 110, 235, 296, 886, 1200
HspAI	GCGC	1 cut(s)	290
Kzo9I	GATC	8 cut(s)	22, 328, 422, 598, 648, 766, 801, 818
LmnI	GCTCC	2 cut(s)	9, 940
LpnPI	CCDG	7 cut(s)	11, 168, 339, 442, 595, 754, 822
Lsp1109I	GCAGC	3 cut(s)	328, 930, 1000
LweI	GCATC	2 cut(s)	50, 1004
MaeI	CTAG	4 cut(s)	111, 159, 827, 888
MaeII	ACGT	1 cut(s)	727
MaeIII	GTNAC	1 cut(s)	1037
MalI	GATC	8 cut(s)	24, 330, 424, 600, 650, 768, 803, 820
MboI	GATC	8 cut(s)	22, 328, 422, 598, 648, 766, 801, 818
MboII	GAAGA	3 cut(s)	622, 1102, 1119
MflI	RGATCY	2 cut(s)	598, 818
MluCI	AATT	6 cut(s)	298, 479, 530, 655, 746, 1177
MlyI	GAGTC	1 cut(s)	640
MmeI	TCCRAC	3 cut(s)	614, 779, 1149
Mph1103I	ATGCAT	2 cut(s)	43, 976
MseI	TTAA	4 cut(s)	375, 482, 873, 1142
MspI	CCGG	1 cut(s)	741
Mva1269I	GAATGC	2 cut(s)	976, 1003
MwoI	GCNNNNNNNGC	4 cut(s)	38, 107, 593, 924
NdeI	CATATG	1 cut(s)	904
NdeII	GATC	8 cut(s)	22, 328, 422, 598, 648, 766, 801, 818
NlaIII	CATG	7 cut(s)	41, 48, 110, 235, 296, 886, 1200
NmeAIII	GCCGAG	1 cut(s)	979
NmuCI	GTSAC	1 cut(s)	1037
NsiI	ATGCAT	2 cut(s)	43, 976
NspI	RCATGY	2 cut(s)	110, 296
NspV	TTCGAA	2 cut(s)	440, 1007
PcsI	WCGNNNNNNNCGW	1 cut(s)	640
PctI	GAATGC	2 cut(s)	976, 1003
PfeI	GAWTC	1 cut(s)	1107
PkrI	GCNGC	3 cut(s)	318, 920, 1015
Ple19I	CGATCG	1 cut(s)	425
PleI	GAGTC	1 cut(s)	639
PpsI	GAGTC	1 cut(s)	639
Ppu21I	YACGTR	1 cut(s)	728
PshAI	GACNNNNGTC	1 cut(s)	676
PshBI	ATTAAT	1 cut(s)	482
PspEI	GGTNACC	1 cut(s)	1037
PsuI	RGATCY	2 cut(s)	598, 818
PvuI	CGATCG	1 cut(s)	425
RgaI	GCGATCGC	1 cut(s)	425
SaqAI	TTAA	4 cut(s)	375, 482, 873, 1142
SatI	GCNGC	3 cut(s)	317, 919, 1014
Sau3AI	GATC	8 cut(s)	22, 328, 422, 598, 648, 766, 801, 818
SchI	GAGTC	1 cut(s)	640
SfaAI	GCGATCGC	1 cut(s)	425
SfaNI	GCATC	2 cut(s)	50, 1004
SfuI	TTCGAA	2 cut(s)	440, 1007
SgfI	GCGATCGC	1 cut(s)	425
SmlI	CTYRAG	4 cut(s)	495, 535, 1115, 1146
SmoI	CTYRAG	4 cut(s)	495, 535, 1115, 1146
Sse9I	AATT	6 cut(s)	298, 479, 530, 655, 746, 1177
SsiI	CCGC	2 cut(s)	695, 878
SspMI	CTAG	4 cut(s)	111, 159, 827, 888
StyI	CCWWGG	1 cut(s)	690
TaaI	ACNGT	1 cut(s)	1167
TaiI	ACGT	1 cut(s)	730
TaqI	TCGA	4 cut(s)	440, 643, 699, 1007
TasI	AATT	6 cut(s)	298, 479, 530, 655, 746, 1177
TfiI	GAWTC	1 cut(s)	1107
Tru1I	TTAA	4 cut(s)	375, 482, 873, 1142
Tru9I	TTAA	4 cut(s)	375, 482, 873, 1142
TscAI	CASTG	1 cut(s)	1170
TseFI	GTSAC	1 cut(s)	1037
TseI	GCWGC	3 cut(s)	316, 918, 1013
Tsp45I	GTSAC	1 cut(s)	1037
TspDTI	ATGAA	4 cut(s)	211, 337, 803, 927
TspGWI	ACGGA	3 cut(s)	542, 701, 994
TspRI	CASTG	1 cut(s)	1170
VspI	ATTAAT	1 cut(s)	482
XapI	RAATTY	3 cut(s)	298, 530, 1177
XceI	RCATGY	2 cut(s)	110, 296
XcmI	CCANNNNNNNNNTGG	1 cut(s)	22
XspI	CTAG	4 cut(s)	111, 159, 827, 888
Zsp2I	ATGCAT	2 cut(s)	43, 976

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.