Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0003598

Physical Location & Seq

Genomic Coordinates Forward (+)

16501922 .. 16509574

Gene Structure 7653 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G013950.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1530 bp

ATGCCCCAAGATCTTCCTGGGTTTTATTATGATGCGGAGAAGAATAGGTACTTCCCCAACAAGGGCCCAGTACCGGGTTCTCGTAGTACTGCTGCTGTTGCTGCTTCTTCTATTGCTCAGAAACTGAACCAGGAAGCCAACAAATGTAAGCTAACAAAAGTAAGAACTTCTAAGCTGCTTCAGGCTAGAGAGTTATATGGTAATGTCATTGCTTCCAGTAAAGGGAGGTGCAACTTCAAGGAGGAATTCCAAAAGGCACAAGCATCCCATCCTGTGGTTTGGAAGTATCAGGGAACAAACAAGCTAGGTGATGGTGCTTTGGAGCGGATAAACATTGATGTACAGACAGGAGAGGGTTTAACTGATACAGATTTTCTATTAGCAGGTGGCAGAAATGGCTGTTTAAGTTTTTTTGAATTCGGAAAAGTCGGGCAGGGTTTCCATTATGGGATGAACTGCTTGCCAGATCTTGTCTGGCCTCTCTTAAACAAAAGTCAAGTAGAATGTAGAAAAGCGCCTGGGCACATATGGAGACCAGCTCAAAATACACCACTGATGTCATCTAGTATATCTTGTATAAAAACATTTGGCAAGCACAGCACAGAAAATGATGGTTCTAGCATCCAGAATGCTCTGGTATCTACGCTAGGAGCTGAGGACCGTGGTGGATCACTTTTTGTTGTTAACCTTACTGAACTCTTAGATTTTCGTCCAAATAGATCTATCTTAAGGCGGAACATTGATGAAGTTGCGACTTTCAACTGCACTGTTTGGACAGCAGATTGTAGATCTGATGGGAGTCGTGCAGTGATTGGAACCAATCTGGGAGCTGCTTTGGTGGATCTGGAAACTGGGGTGAAATCATGGCTGCTGCGTTGTAAAAGTGATGTTTTGGCACAACAACTTGTTCACTCGGGAAATGTTGTTTTATGTGGACTCAGAAATGGAGCGATTGTAACGGTTGATGTTCGTGAGAAATGGGAAGGATTTTCTGCAAGACATGCTAGTCATAGAATACGGCACTCACCTTTGGATAGCACTCTTGGAAAATCTAGTGAAAAATGGTTCAAGCTTTCTGGAAATATACATCCTTCTCATACCATAAAAATGCCTTCATCTATTGCATGTTTAGTATCGCTTCAGTTTGATGATCAGTACTTCTTGGCAAGCTCCATGGACGGAACGGTGAAGCTTTATGACCATCGCATAATCCAAAGAGGAGCTGTCCAAACTTATGAGGGGCATGTGAATTCCCATACTTGTTTGCAACTTGGAGTTGATCCATCTGAGCGATTTTTTATAGCGGGTGGAGAGGACTGCAATTTAAGACTTTGGAGTATAAAGTCAGGTGAACTTCTTTTTGAGGATAAGTTAACAAATACAGTCACCCCAACTGTGTGCTGGCAAAAATCTGAAGCGTTTAAAGGATTGCAGGATGAAAGGCAAAGCTATGACAATGTTAAACATAATAGCTTGGGGGCTTGGCTTGGATCGGCAGAAGGAATATTTTACGTGGACTGGGAACTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005682 GO:0006139 GO:0006396 GO:0006464 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0019538 GO:0030532 GO:0031461 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043687 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0071011 GO:0071013 GO:0071704 GO:0080008 GO:0090304 GO:0097159 GO:0097525 GO:0120114 GO:1901360 GO:1901363 GO:1901564 GO:1902494 GO:1990234 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

509

Amino Acids

56.31

Weight (kDa)

8.3

Isoelectric Point (pI)

42.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_THOC3	PF25174	294 - 468	4.7e-07	THOC3 beta-propeller domain
Beta-prop_DCAF4	PF23761	372 - 453	2.5e-14	DDB1- and CUL4-associated factor 4 beta-propeller domain
Beta-prop_WDR5	PF25175	378 - 457	6.6e-09	WDR5 beta-propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003598)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G17370 AT5G17370
fragaria_vesca	FvH4_3g13240 FvH4_3g13240 FvH4_3g13240 FvH4_3g13240 FvH4_3g13240
malus_domestica	MD05G1243800.v1.1
prunus_persica	Prupe.4G119800_v2.0.a1 Prupe.4G119800_v2.0.a1 Prupe.4G119800_v2.0.a1 Prupe.4G119800_v2.0.a1
pyrus_communis	pycom05g22030 pycom10g18960
rosa_chinensis	RchiOBHm_Chr5g0021601 RchiOBHm_Chr5g0021611 RchiOBHm_Chr5g0021701
rosa_laevigata	RLG00000032617
rosa_multiflora	Rmu_sc0009984.1_g000013 Rmu_sc0016972.1_g000002
rosa_roxburghii	Rroxscaffold_1G00057050 Rroxscaffold_2G00125890 Rroxscaffold_3G00228540 Rroxscaffold_3G00229610 Rroxscaffold_4G00317430
rosa_rugosa	Rorug05G0067600 Rorug05G0067700 Rorug05G0067800
rosa_samantha	Rh5AG157000 Rh5BG156500 Rh5CG170800 Rh5DG156800
rosa_wichuraiana	Rw0G000530 Rw0G007040 Rw5G013950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	374
AasI	GACNNNNNNGTC	1 cut(s)	1005
Acc36I	ACCTGC	1 cut(s)	374
AccB7I	CCANNNNNTGG	1 cut(s)	274
AccBSI	CCGCTC	1 cut(s)	325
AciI	CCGC	4 cut(s)	35, 325, 733, 1304
AclWI	GGATC	4 cut(s)	676, 849, 1274, 1498
AcsI	RAATTY	3 cut(s)	245, 416, 1249
AcuI	CTGAAG	3 cut(s)	164, 1124, 1434
AfaI	GTAC	5 cut(s)	50, 72, 88, 342, 1157
AfiI	CCNNNNNNNGG	6 cut(s)	61, 62, 73, 74, 222, 274
AflII	CTTAAG	1 cut(s)	727
AgsI	TTSAA	4 cut(s)	238, 416, 760, 1069
AjnI	CCWGG	3 cut(s)	16, 129, 517
Alw26I	GTCTC	1 cut(s)	526
AlwI	GGATC	4 cut(s)	676, 849, 1274, 1498
AlwNI	CAGNNNCTG	1 cut(s)	124
Ama87I	CYCGRG	1 cut(s)	913
AoxI	GGCC	2 cut(s)	64, 476
ApaI	GGGCCC	1 cut(s)	68
ApeKI	GCWGC	6 cut(s)	92, 101, 175, 830, 868, 871
ApoI	RAATTY	3 cut(s)	245, 416, 1249
AspLEI	GCGC	1 cut(s)	517
AspS9I	GGNCC	3 cut(s)	64, 65, 658
AsuC2I	CCSGG	1 cut(s)	75
AsuHPI	GGTGA	6 cut(s)	320, 868, 1017, 1198, 1361, 1378
AvaI	CYCGRG	1 cut(s)	913
AvaII	GGWCC	1 cut(s)	658
BaeGI	GKGCMC	2 cut(s)	68, 525
BanII	GRGCYC	1 cut(s)	68
BarI	GAAGNNNNNNTAC	2 cut(s)	32, 64
BbvCI	CCTCAGC	1 cut(s)	654
BbvI	GCAGC	6 cut(s)	79, 88, 162, 817, 855, 858
BccI	CCATC	6 cut(s)	276, 305, 605, 788, 1209, 1291
BceAI	ACGGC	1 cut(s)	1034
BciT130I	CCWGG	3 cut(s)	18, 131, 519
BclI	TGATCA	1 cut(s)	1150
BcnI	CCSGG	1 cut(s)	75
BcoDI	GTCTC	1 cut(s)	526
BfaI	CTAG	7 cut(s)	186, 305, 564, 618, 647, 1005, 1053
BfoI	RGCGCY	1 cut(s)	518
BfrI	CTTAAG	1 cut(s)	727
BfuAI	ACCTGC	1 cut(s)	374
BglII	AGATCT	4 cut(s)	10, 466, 719, 788
BisI	GCNGC	6 cut(s)	93, 102, 176, 831, 869, 872
BlsI	GCNGC	6 cut(s)	94, 103, 177, 832, 870, 873
BmcAI	AGTACT	2 cut(s)	88, 1157
Bme1390I	CCNGG	4 cut(s)	18, 75, 131, 519
Bme18I	GGWCC	1 cut(s)	658
BmeT110I	CYCGRG	1 cut(s)	913
BmgT120I	GGNCC	3 cut(s)	64, 65, 658
BmiI	GGNNCC	2 cut(s)	66, 817
BmrFI	CCNGG	4 cut(s)	18, 75, 131, 519
BmrI	ACTGGG	3 cut(s)	62, 861, 1528
BmsI	GCATC	3 cut(s)	22, 272, 630
BmuI	ACTGGG	3 cut(s)	62, 861, 1528
BplI	GAGNNNNNCTC	2 cut(s)	523, 555
Bpu10I	CCTNAGC	1 cut(s)	654
BpuMI	CCSGG	1 cut(s)	75
BsaAI	YACGTR	1 cut(s)	1513
BsaI	GGTCTC	1 cut(s)	526
BsaJI	CCNNGG	4 cut(s)	17, 518, 661, 1173
BsaXI	ACNNNNNCTCC	2 cut(s)	939, 969
Bsc4I	CCNNNNNNNGG	6 cut(s)	61, 62, 73, 74, 222, 274
Bse1I	ACTGG	4 cut(s)	68, 216, 856, 1523
Bse3DI	GCAATG	1 cut(s)	207
BseBI	CCWGG	3 cut(s)	18, 131, 519
BseDI	CCNNGG	4 cut(s)	17, 518, 661, 1173
BseGI	GGATG	6 cut(s)	263, 268, 456, 621, 1087, 1441
BseLI	CCNNNNNNNGG	6 cut(s)	61, 62, 73, 74, 222, 274
BseMI	GCAATG	1 cut(s)	207
BseMII	CTCAG	4 cut(s)	131, 645, 952, 1278
BseNI	ACTGG	4 cut(s)	68, 216, 856, 1523
BseRI	GAGGAG	1 cut(s)	1233
BseSI	GKGCMC	2 cut(s)	68, 525
BseXI	GCAGC	6 cut(s)	79, 88, 162, 817, 855, 858
BsgI	GTGCAG	2 cut(s)	748, 825
BshFI	GGCC	2 cut(s)	66, 478
BsiHKCI	CYCGRG	1 cut(s)	913
BsiSI	CCGG	1 cut(s)	74
BslI	CCNNNNNNNGG	6 cut(s)	61, 62, 73, 74, 222, 274
BsmAI	GTCTC	1 cut(s)	526
BsmI	GAATGC	1 cut(s)	634
BsnI	GGCC	2 cut(s)	66, 478
Bso31I	GGTCTC	1 cut(s)	526
BsoBI	CYCGRG	1 cut(s)	913
Bsp120I	GGGCCC	1 cut(s)	64
Bsp1286I	GDGCHC	2 cut(s)	68, 525
Bsp1407I	TGTACA	1 cut(s)	340
Bsp143I	GATC	9 cut(s)	10, 466, 668, 719, 788, 841, 1150, 1279, 1490
Bsp19I	CCATGG	1 cut(s)	1173
BspACI	CCGC	4 cut(s)	35, 325, 733, 1304
BspANI	GGCC	2 cut(s)	66, 478
BspCNI	CTCAG	4 cut(s)	130, 646, 951, 1279
BspLI	GGNNCC	2 cut(s)	66, 817
BspMI	ACCTGC	1 cut(s)	374
BspPI	GGATC	4 cut(s)	676, 849, 1274, 1498
BspTI	CTTAAG	1 cut(s)	727
BspTNI	GGTCTC	1 cut(s)	526
BsrBI	CCGCTC	1 cut(s)	325
BsrDI	GCAATG	1 cut(s)	207
BsrGI	TGTACA	1 cut(s)	340
BsrI	ACTGG	4 cut(s)	68, 216, 856, 1523
BssECI	CCNNGG	4 cut(s)	17, 518, 661, 1173
BssMI	GATC	9 cut(s)	10, 466, 668, 719, 788, 841, 1150, 1279, 1490
BssT1I	CCWWGG	1 cut(s)	1173
Bst2UI	CCWGG	3 cut(s)	18, 131, 519
Bst4CI	ACNGT	6 cut(s)	662, 769, 961, 1186, 1384, 1396
BstAFI	CTTAAG	1 cut(s)	727
BstAPI	GCANNNNNTGC	1 cut(s)	1001
BstAUI	TGTACA	1 cut(s)	340
BstBAI	YACGTR	1 cut(s)	1513
BstC8I	GCNNGC	4 cut(s)	461, 593, 1168, 1403
BstDEI	CTNAG	6 cut(s)	117, 171, 654, 700, 938, 1287
BstDSI	CCRYGG	2 cut(s)	661, 1173
BstF5I	GGATG	6 cut(s)	263, 268, 456, 621, 1087, 1441
BstH2I	RGCGCY	1 cut(s)	518
BstHHI	GCGC	1 cut(s)	517
BstKTI	GATC	9 cut(s)	13, 469, 671, 722, 791, 844, 1153, 1282, 1493
BstMAI	GTCTC	1 cut(s)	526
BstMBI	GATC	9 cut(s)	10, 466, 668, 719, 788, 841, 1150, 1279, 1490
BstMWI	GCNNNNNNNGC	5 cut(s)	98, 101, 396, 597, 1001
BstNI	CCWGG	3 cut(s)	18, 131, 519
BstNSI	RCATGY	3 cut(s)	1004, 1128, 1247
BstSCI	CCNGG	4 cut(s)	16, 73, 129, 517
BstSLI	GKGCMC	2 cut(s)	68, 525
BstV1I	GCAGC	6 cut(s)	79, 88, 162, 817, 855, 858
BstX2I	RGATCY	5 cut(s)	10, 466, 719, 788, 841
BstYI	RGATCY	5 cut(s)	10, 466, 719, 788, 841
BsuRI	GGCC	2 cut(s)	66, 478
BtgI	CCRYGG	2 cut(s)	661, 1173
BtgZI	GCGATG	1 cut(s)	1187
BtsCI	GGATG	6 cut(s)	263, 268, 456, 621, 1087, 1441
BtsI	GCAGTG	1 cut(s)	813
BtsIMutI	CAGTG	3 cut(s)	551, 765, 813
BveI	ACCTGC	1 cut(s)	374
Cac8I	GCNNGC	4 cut(s)	461, 593, 1168, 1403
CaiI	CAGNNNCTG	1 cut(s)	124
CfoI	GCGC	1 cut(s)	517
Cfr13I	GGNCC	3 cut(s)	64, 65, 658
Csp6I	GTAC	5 cut(s)	49, 71, 87, 341, 1156
CviAII	CATG	5 cut(s)	864, 1001, 1125, 1174, 1244
CviQI	GTAC	5 cut(s)	49, 71, 87, 341, 1156
DdeI	CTNAG	6 cut(s)	117, 171, 654, 700, 938, 1287
DpnI	GATC	9 cut(s)	12, 468, 670, 721, 790, 843, 1152, 1281, 1492
DpnII	GATC	9 cut(s)	10, 466, 668, 719, 788, 841, 1150, 1279, 1490
DraI	TTTAAA	1 cut(s)	1423
DrdI	GACNNNNNNGTC	1 cut(s)	1005
DseDI	GACNNNNNNGTC	1 cut(s)	1005
EciI	GGCGGA	1 cut(s)	748
Eco130I	CCWWGG	1 cut(s)	1173
Eco24I	GRGCYC	1 cut(s)	68
Eco31I	GGTCTC	1 cut(s)	526
Eco47I	GGWCC	1 cut(s)	658
Eco57I	CTGAAG	3 cut(s)	164, 1124, 1434
Eco88I	CYCGRG	1 cut(s)	913
EcoO109I	RGGNCCY	1 cut(s)	64
EcoRI	GAATTC	3 cut(s)	245, 416, 1249
EcoRII	CCWGG	3 cut(s)	16, 129, 517
EcoT14I	CCWWGG	1 cut(s)	1173
EcoT38I	GRGCYC	1 cut(s)	68
ErhI	CCWWGG	1 cut(s)	1173
FaeI	CATG	5 cut(s)	867, 1004, 1128, 1177, 1247
FatI	CATG	5 cut(s)	863, 1000, 1124, 1173, 1243
FauI	CCCGC	1 cut(s)	1297
FauNDI	CATATG	1 cut(s)	527
FbaI	TGATCA	1 cut(s)	1150
Fnu4HI	GCNGC	6 cut(s)	93, 102, 176, 831, 869, 872
FokI	GGATG	6 cut(s)	250, 255, 463, 608, 1074, 1448
FriOI	GRGCYC	1 cut(s)	68
Fsp4HI	GCNGC	6 cut(s)	93, 102, 176, 831, 869, 872
FspBI	CTAG	7 cut(s)	186, 305, 564, 618, 647, 1005, 1053
GlaI	GCGC	1 cut(s)	516
GluI	GCNGC	6 cut(s)	93, 102, 176, 831, 869, 872
HaeII	RGCGCY	1 cut(s)	518
HaeIII	GGCC	2 cut(s)	66, 478
HapII	CCGG	1 cut(s)	74
HhaI	GCGC	1 cut(s)	517
Hin1II	CATG	5 cut(s)	867, 1004, 1128, 1177, 1247
Hin6I	GCGC	1 cut(s)	515
HinP1I	GCGC	1 cut(s)	515
HincII	GTYRAC	2 cut(s)	685, 1374
HindII	GTYRAC	2 cut(s)	685, 1374
HindIII	AAGCTT	2 cut(s)	1070, 1190
HinfI	GANTC	2 cut(s)	799, 936
HpaI	GTTAAC	2 cut(s)	685, 1374
HpaII	CCGG	1 cut(s)	74
HphI	GGTGA	6 cut(s)	320, 868, 1017, 1198, 1361, 1378
Hpy166II	GTNNAC	6 cut(s)	685, 910, 935, 1352, 1374, 1516
Hpy188I	TCNGA	6 cut(s)	120, 422, 793, 941, 1288, 1414
Hpy188III	TCNNGA	5 cut(s)	625, 845, 915, 971, 1077
Hpy8I	GTNNAC	6 cut(s)	685, 910, 935, 1352, 1374, 1516
HpyAV	CCTTC	4 cut(s)	977, 1101, 1122, 1493
HpyCH4III	ACNGT	6 cut(s)	662, 769, 961, 1186, 1384, 1396
HpyCH4IV	ACGT	1 cut(s)	1512
HpyCH4V	TGCA	8 cut(s)	231, 765, 806, 995, 1124, 1267, 1320, 1432
HpyF10VI	GCNNNNNNNGC	5 cut(s)	98, 101, 396, 597, 1001
HpyF3I	CTNAG	6 cut(s)	117, 171, 654, 700, 938, 1287
HpySE526I	ACGT	1 cut(s)	1512
Hsp92II	CATG	5 cut(s)	867, 1004, 1128, 1177, 1247
HspAI	GCGC	1 cut(s)	515
Ksp22I	TGATCA	1 cut(s)	1150
KspAI	GTTAAC	2 cut(s)	685, 1374
Kzo9I	GATC	9 cut(s)	10, 466, 668, 719, 788, 841, 1150, 1279, 1490
LmnI	GCTCC	6 cut(s)	322, 650, 827, 947, 1175, 1220
Lsp1109I	GCAGC	6 cut(s)	79, 88, 162, 817, 855, 858
LweI	GCATC	3 cut(s)	22, 272, 630
MaeI	CTAG	7 cut(s)	186, 305, 564, 618, 647, 1005, 1053
MaeII	ACGT	1 cut(s)	1512
MaeIII	GTNAC	2 cut(s)	955, 1384
MalI	GATC	9 cut(s)	12, 468, 670, 721, 790, 843, 1152, 1281, 1492
MbiI	CCGCTC	1 cut(s)	325
MboI	GATC	9 cut(s)	10, 466, 668, 719, 788, 841, 1150, 1279, 1490
MboII	GAAGA	3 cut(s)	5, 52, 99
MflI	RGATCY	5 cut(s)	10, 466, 719, 788, 841
MhlI	GDGCHC	2 cut(s)	68, 525
MluCI	AATT	4 cut(s)	245, 416, 1249, 1321
MlyI	GAGTC	2 cut(s)	808, 930
MnlI	CCTC	9 cut(s)	219, 235, 346, 489, 649, 1211, 1231, 1306, 1357
MseI	TTAA	9 cut(s)	359, 404, 485, 684, 728, 1325, 1373, 1422, 1461
MslI	CAYNNNNRTG	1 cut(s)	1106
MspCI	CTTAAG	1 cut(s)	727
MspI	CCGG	1 cut(s)	74
MspR9I	CCNGG	4 cut(s)	18, 75, 131, 519
Mva1269I	GAATGC	1 cut(s)	634
MvaI	CCWGG	3 cut(s)	18, 131, 519
MwoI	GCNNNNNNNGC	5 cut(s)	98, 101, 396, 597, 1001
NciI	CCSGG	1 cut(s)	75
NcoI	CCATGG	1 cut(s)	1173
NdeI	CATATG	1 cut(s)	527
NdeII	GATC	9 cut(s)	10, 466, 668, 719, 788, 841, 1150, 1279, 1490
NlaIII	CATG	5 cut(s)	867, 1004, 1128, 1177, 1247
NlaIV	GGNNCC	2 cut(s)	66, 817
NmuCI	GTSAC	1 cut(s)	1384
NspI	RCATGY	3 cut(s)	1004, 1128, 1247
PaqCI	CACCTGC	1 cut(s)	374
PctI	GAATGC	1 cut(s)	634
PflMI	CCANNNNNTGG	1 cut(s)	274
PkrI	GCNGC	6 cut(s)	94, 103, 177, 832, 870, 873
PleI	GAGTC	2 cut(s)	807, 930
PpsI	GAGTC	2 cut(s)	807, 930
Ppu21I	YACGTR	1 cut(s)	1513
Psp6I	CCWGG	3 cut(s)	16, 129, 517
PspGI	CCWGG	3 cut(s)	16, 129, 517
PspN4I	GGNNCC	2 cut(s)	66, 817
PspOMI	GGGCCC	1 cut(s)	64
PspPI	GGNCC	3 cut(s)	64, 65, 658
PstNI	CAGNNNCTG	1 cut(s)	124
PsuI	RGATCY	5 cut(s)	10, 466, 719, 788, 841
RsaI	GTAC	5 cut(s)	50, 72, 88, 342, 1157
RsaNI	GTAC	5 cut(s)	49, 71, 87, 341, 1156
RseI	CAYNNNNRTG	1 cut(s)	1106
SaqAI	TTAA	9 cut(s)	359, 404, 485, 684, 728, 1325, 1373, 1422, 1461
SatI	GCNGC	6 cut(s)	93, 102, 176, 831, 869, 872
Sau3AI	GATC	9 cut(s)	10, 466, 668, 719, 788, 841, 1150, 1279, 1490
Sau96I	GGNCC	3 cut(s)	64, 65, 658
ScaI	AGTACT	2 cut(s)	88, 1157
SchI	GAGTC	2 cut(s)	808, 930
ScrFI	CCNGG	4 cut(s)	18, 75, 131, 519
SduI	GDGCHC	2 cut(s)	68, 525
SfaNI	GCATC	3 cut(s)	22, 272, 630
SinI	GGWCC	1 cut(s)	658
SmiMI	CAYNNNNRTG	1 cut(s)	1106
SmlI	CTYRAG	1 cut(s)	727
SmoI	CTYRAG	1 cut(s)	727
Sse9I	AATT	4 cut(s)	245, 416, 1249, 1321
SsiI	CCGC	4 cut(s)	35, 325, 733, 1304
SspI	AATATT	1 cut(s)	1506
SspMI	CTAG	7 cut(s)	186, 305, 564, 618, 647, 1005, 1053
StyD4I	CCNGG	4 cut(s)	16, 73, 129, 517
StyI	CCWWGG	1 cut(s)	1173
TaaI	ACNGT	6 cut(s)	662, 769, 961, 1186, 1384, 1396
TaiI	ACGT	1 cut(s)	1515
TasI	AATT	4 cut(s)	245, 416, 1249, 1321
TatI	WGTACW	3 cut(s)	86, 340, 1155
Tru1I	TTAA	9 cut(s)	359, 404, 485, 684, 728, 1325, 1373, 1422, 1461
Tru9I	TTAA	9 cut(s)	359, 404, 485, 684, 728, 1325, 1373, 1422, 1461
TscAI	CASTG	3 cut(s)	558, 772, 813
TseFI	GTSAC	1 cut(s)	1384
TseI	GCWGC	6 cut(s)	92, 101, 175, 830, 868, 871
Tsp45I	GTSAC	1 cut(s)	1384
TspDTI	ATGAA	4 cut(s)	467, 759, 1104, 1452
TspGWI	ACGGA	1 cut(s)	1194
TspRI	CASTG	3 cut(s)	558, 772, 813
Van91I	CCANNNNNTGG	1 cut(s)	274
Vha464I	CTTAAG	1 cut(s)	727
VpaK11BI	GGWCC	1 cut(s)	658
XapI	RAATTY	3 cut(s)	245, 416, 1249
XceI	RCATGY	3 cut(s)	1004, 1128, 1247
XcmI	CCANNNNNNNNNTGG	3 cut(s)	14, 471, 1398
XspI	CTAG	7 cut(s)	186, 305, 564, 618, 647, 1005, 1053
ZrmI	AGTACT	2 cut(s)	88, 1157

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.