Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0003598

Physical Location & Seq

Genomic Coordinates Forward (+)

15959891 .. 15967696

Gene Structure 7806 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG156800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1158 bp

ATGCCCCAAGATCTTCCTGGGTTTTATTATGATGCGGAGAAGAATAGGTACTTCCCCAACAAGGGCCCAGTACCGGGTTCTCGTAGTACTGCTGCTGCTGCTGCTGCTTCTTCTAGTGCTCAGAAACTGAACCAGGAAGCCAACAAATGTAAGCTAACAAAAGTAAGAACTTCTAAGCTGCTTCAGGCTAGAGAGTTATATGGTAATGTCATTGCTTCCAGTAAAGGGAGGTGCAACTTCAAGGAGGAATTCCAAAAGGCACAAGCATCCCATCCTGTGGTTTGGAAGTATCAGGGAACAAACAAGCTAGGTGATGGTGCTTTGGAGCGGATAAACATTGATGTACAGACAGGAGAGGGTTTAACTGATACAGATTTTCTATTAGCAGGTGGCAGAAATGGCTGTTTAAGTTTTTTTGAATTCGGCAAAGTCGGGCAGGGTTTCCATTATGGGATGAACTGCTTGCCAGATCTTGTCTGGCCTCTCTTAAACAAAAGTCAAGTAGAATGTAGAAAAGCGCCTGGGCACATATGGAGACCAGCTCAAAATACACCACGGATGTCATCGAGTATATCTTGTATAAAAACATTTGGCAAGCACAGCACCGAAAATGATGGTTCTAGCATCCAGAATGCTCTGGTGTCTACGCTAGGAGCTGAGGACCGTGGTGGATCACTTTTTGTTGTTAACCTTACTGAACTCTTAGATTTTCGTCCAAATAGATCTATCTTGAGGCGGAACATTGATGAAGTTGCGACTTTCAACTGCACTGTTTGGACAGCAGATTGTAGATCTGATGGGAGTTGTGCAGTGATTGGAACCAATCTGGGAGCTGCTTTGGTGGATCTGGAAACTGGGGTGAAATCATGGCTGCTGCGTAGTAAAAGTGATGTTTTGGCACAACAACTTGTTCACTCGGGAAATGTTGTTTTATGTGGACTCAGAAATGGAGCGATTGTAACGGTTGATGTTCGTGAGAAACGGGAAGGATTTTCTGCAAGACATGCTAGTCATAGAATACGGCACTCACCTTTGGATAGCACTCTTGGAAAATCTAGTGAAAAATGGTTCAAGCTTTCTGGAAATATACATCCTTCTCATACCATAAAAATGCCTTCATCTATTGCATGGTTAGTGCGCTTTATTATCCAACAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005682 GO:0006139 GO:0006396 GO:0006464 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0019538 GO:0030532 GO:0031461 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043687 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0071011 GO:0071013 GO:0071704 GO:0080008 GO:0090304 GO:0097159 GO:0097525 GO:0120114 GO:1901360 GO:1901363 GO:1901564 GO:1902494 GO:1990234 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

385

Amino Acids

42.24

Weight (kDa)

9.39

Isoelectric Point (pI)

46.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_DCAF4	PF23761	258 - 340	9.9e-06	DDB1- and CUL4-associated factor 4 beta-propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003598)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G17370 AT5G17370
fragaria_vesca	FvH4_3g13240 FvH4_3g13240 FvH4_3g13240 FvH4_3g13240 FvH4_3g13240
malus_domestica	MD05G1243800.v1.1
prunus_persica	Prupe.4G119800_v2.0.a1 Prupe.4G119800_v2.0.a1 Prupe.4G119800_v2.0.a1 Prupe.4G119800_v2.0.a1
pyrus_communis	pycom05g22030 pycom10g18960
rosa_chinensis	RchiOBHm_Chr5g0021601 RchiOBHm_Chr5g0021611 RchiOBHm_Chr5g0021701
rosa_laevigata	RLG00000032617
rosa_multiflora	Rmu_sc0009984.1_g000013 Rmu_sc0016972.1_g000002
rosa_roxburghii	Rroxscaffold_1G00057050 Rroxscaffold_2G00125890 Rroxscaffold_3G00228540 Rroxscaffold_3G00229610 Rroxscaffold_4G00317430
rosa_rugosa	Rorug05G0067600 Rorug05G0067700 Rorug05G0067800
rosa_samantha	Rh5AG157000 Rh5BG156500 Rh5CG170800 Rh5DG156800
rosa_wichuraiana	Rw0G000530 Rw0G007040 Rw5G013950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	377
AasI	GACNNNNNNGTC	1 cut(s)	1008
Acc36I	ACCTGC	1 cut(s)	377
AccB7I	CCANNNNNTGG	1 cut(s)	277
AccBSI	CCGCTC	1 cut(s)	328
AccI	GTMKAC	1 cut(s)	644
AciI	CCGC	3 cut(s)	35, 328, 736
AclWI	GGATC	2 cut(s)	679, 852
AcsI	RAATTY	2 cut(s)	248, 419
AcuI	CTGAAG	1 cut(s)	167
AfaI	GTAC	4 cut(s)	50, 72, 88, 345
AfiI	CCNNNNNNNGG	6 cut(s)	61, 62, 73, 74, 225, 277
AgsI	TTSAA	4 cut(s)	241, 419, 763, 1072
AjnI	CCWGG	3 cut(s)	16, 132, 520
AluBI	AGCT	7 cut(s)	154, 178, 307, 542, 656, 833, 1075
AluI	AGCT	7 cut(s)	154, 178, 307, 542, 656, 833, 1075
Alw21I	GWGCWC	1 cut(s)	121
Alw26I	GTCTC	1 cut(s)	529
AlwI	GGATC	2 cut(s)	679, 852
AlwNI	CAGNNNCTG	1 cut(s)	127
Ama87I	CYCGRG	1 cut(s)	916
AoxI	GGCC	2 cut(s)	64, 479
ApaI	GGGCCC	1 cut(s)	68
ApeKI	GCWGC	9 cut(s)	92, 95, 98, 101, 104, 178, 833, 871, 874
ApoI	RAATTY	2 cut(s)	248, 419
AspLEI	GCGC	2 cut(s)	520, 1140
AspS9I	GGNCC	3 cut(s)	64, 65, 661
AsuC2I	CCSGG	1 cut(s)	75
AsuHPI	GGTGA	3 cut(s)	323, 871, 1020
AvaI	CYCGRG	1 cut(s)	916
AvaII	GGWCC	1 cut(s)	661
BaeGI	GKGCMC	2 cut(s)	68, 528
BanII	GRGCYC	1 cut(s)	68
BarI	GAAGNNNNNNTAC	2 cut(s)	32, 64
Bbv12I	GWGCWC	1 cut(s)	121
BbvCI	CCTCAGC	1 cut(s)	657
BbvI	GCAGC	9 cut(s)	79, 82, 85, 88, 91, 165, 820, 858, 861
BccI	CCATC	4 cut(s)	279, 308, 608, 791
BceAI	ACGGC	1 cut(s)	1037
BciT130I	CCWGG	3 cut(s)	18, 134, 522
BcnI	CCSGG	1 cut(s)	75
BcoDI	GTCTC	1 cut(s)	529
BfaI	CTAG	7 cut(s)	114, 189, 308, 621, 650, 1008, 1056
BfoI	RGCGCY	1 cut(s)	521
BfuAI	ACCTGC	1 cut(s)	377
BglII	AGATCT	4 cut(s)	10, 469, 722, 791
BisI	GCNGC	9 cut(s)	93, 96, 99, 102, 105, 179, 834, 872, 875
BlsI	GCNGC	9 cut(s)	94, 97, 100, 103, 106, 180, 835, 873, 876
BmcAI	AGTACT	1 cut(s)	88
Bme1390I	CCNGG	4 cut(s)	18, 75, 134, 522
Bme18I	GGWCC	1 cut(s)	661
BmeT110I	CYCGRG	1 cut(s)	916
BmgT120I	GGNCC	3 cut(s)	64, 65, 661
BmiI	GGNNCC	2 cut(s)	66, 820
BmrFI	CCNGG	4 cut(s)	18, 75, 134, 522
BmrI	ACTGGG	2 cut(s)	62, 864
BmsI	GCATC	3 cut(s)	22, 275, 633
BmuI	ACTGGG	2 cut(s)	62, 864
BplI	GAGNNNNNCTC	2 cut(s)	526, 558
Bpu10I	CCTNAGC	1 cut(s)	657
BpuEI	CTTGAG	1 cut(s)	751
BpuMI	CCSGG	1 cut(s)	75
BsaI	GGTCTC	1 cut(s)	529
BsaJI	CCNNGG	4 cut(s)	17, 521, 554, 664
BsaXI	ACNNNNNCTCC	2 cut(s)	942, 972
Bsc4I	CCNNNNNNNGG	6 cut(s)	61, 62, 73, 74, 225, 277
Bse1I	ACTGG	3 cut(s)	68, 219, 859
Bse3DI	GCAATG	1 cut(s)	210
BseBI	CCWGG	3 cut(s)	18, 134, 522
BseDI	CCNNGG	4 cut(s)	17, 521, 554, 664
BseGI	GGATG	6 cut(s)	266, 271, 459, 564, 624, 1090
BseLI	CCNNNNNNNGG	6 cut(s)	61, 62, 73, 74, 225, 277
BseMI	GCAATG	1 cut(s)	210
BseMII	CTCAG	3 cut(s)	134, 648, 955
BseNI	ACTGG	3 cut(s)	68, 219, 859
BseSI	GKGCMC	2 cut(s)	68, 528
BseXI	GCAGC	9 cut(s)	79, 82, 85, 88, 91, 165, 820, 858, 861
BsgI	GTGCAG	2 cut(s)	751, 828
BshFI	GGCC	2 cut(s)	66, 481
BsiHKAI	GWGCWC	1 cut(s)	121
BsiHKCI	CYCGRG	1 cut(s)	916
BsiSI	CCGG	1 cut(s)	74
BslI	CCNNNNNNNGG	6 cut(s)	61, 62, 73, 74, 225, 277
BsmAI	GTCTC	1 cut(s)	529
BsmI	GAATGC	1 cut(s)	637
BsnI	GGCC	2 cut(s)	66, 481
Bso31I	GGTCTC	1 cut(s)	529
BsoBI	CYCGRG	1 cut(s)	916
Bsp120I	GGGCCC	1 cut(s)	64
Bsp1286I	GDGCHC	3 cut(s)	68, 121, 528
Bsp1407I	TGTACA	1 cut(s)	343
Bsp143I	GATC	6 cut(s)	10, 469, 671, 722, 791, 844
BspACI	CCGC	3 cut(s)	35, 328, 736
BspANI	GGCC	2 cut(s)	66, 481
BspCNI	CTCAG	3 cut(s)	133, 649, 954
BspLI	GGNNCC	2 cut(s)	66, 820
BspMI	ACCTGC	1 cut(s)	377
BspPI	GGATC	2 cut(s)	679, 852
BspTNI	GGTCTC	1 cut(s)	529
BsrBI	CCGCTC	1 cut(s)	328
BsrDI	GCAATG	1 cut(s)	210
BsrGI	TGTACA	1 cut(s)	343
BsrI	ACTGG	3 cut(s)	68, 219, 859
BssECI	CCNNGG	4 cut(s)	17, 521, 554, 664
BssMI	GATC	6 cut(s)	10, 469, 671, 722, 791, 844
Bst2UI	CCWGG	3 cut(s)	18, 134, 522
Bst4CI	ACNGT	4 cut(s)	665, 772, 964, 1155
BstAPI	GCANNNNNTGC	1 cut(s)	1004
BstAUI	TGTACA	1 cut(s)	343
BstC8I	GCNNGC	2 cut(s)	464, 596
BstDEI	CTNAG	5 cut(s)	120, 174, 657, 703, 941
BstDSI	CCRYGG	2 cut(s)	554, 664
BstF5I	GGATG	6 cut(s)	266, 271, 459, 564, 624, 1090
BstH2I	RGCGCY	1 cut(s)	521
BstHHI	GCGC	2 cut(s)	520, 1140
BstKTI	GATC	6 cut(s)	13, 472, 674, 725, 794, 847
BstMAI	GTCTC	1 cut(s)	529
BstMBI	GATC	6 cut(s)	10, 469, 671, 722, 791, 844
BstMWI	GCNNNNNNNGC	6 cut(s)	98, 101, 104, 399, 600, 1004
BstNI	CCWGG	3 cut(s)	18, 134, 522
BstNSI	RCATGY	1 cut(s)	1007
BstSCI	CCNGG	4 cut(s)	16, 73, 132, 520
BstSLI	GKGCMC	2 cut(s)	68, 528
BstV1I	GCAGC	9 cut(s)	79, 82, 85, 88, 91, 165, 820, 858, 861
BstX2I	RGATCY	5 cut(s)	10, 469, 722, 791, 844
BstYI	RGATCY	5 cut(s)	10, 469, 722, 791, 844
BsuRI	GGCC	2 cut(s)	66, 481
BtgI	CCRYGG	2 cut(s)	554, 664
BtsCI	GGATG	6 cut(s)	266, 271, 459, 564, 624, 1090
BtsI	GCAGTG	1 cut(s)	816
BtsIMutI	CAGTG	2 cut(s)	768, 816
BveI	ACCTGC	1 cut(s)	377
Cac8I	GCNNGC	2 cut(s)	464, 596
CaiI	CAGNNNCTG	1 cut(s)	127
CfoI	GCGC	2 cut(s)	520, 1140
Cfr13I	GGNCC	3 cut(s)	64, 65, 661
Csp6I	GTAC	4 cut(s)	49, 71, 87, 344
CviAII	CATG	3 cut(s)	867, 1004, 1128
CviQI	GTAC	4 cut(s)	49, 71, 87, 344
DdeI	CTNAG	5 cut(s)	120, 174, 657, 703, 941
DpnI	GATC	6 cut(s)	12, 471, 673, 724, 793, 846
DpnII	GATC	6 cut(s)	10, 469, 671, 722, 791, 844
DrdI	GACNNNNNNGTC	1 cut(s)	1008
DseDI	GACNNNNNNGTC	1 cut(s)	1008
EciI	GGCGGA	1 cut(s)	751
Eco24I	GRGCYC	1 cut(s)	68
Eco31I	GGTCTC	1 cut(s)	529
Eco47I	GGWCC	1 cut(s)	661
Eco57I	CTGAAG	1 cut(s)	167
Eco88I	CYCGRG	1 cut(s)	916
EcoO109I	RGGNCCY	1 cut(s)	64
EcoRI	GAATTC	2 cut(s)	248, 419
EcoRII	CCWGG	3 cut(s)	16, 132, 520
EcoT38I	GRGCYC	1 cut(s)	68
FaeI	CATG	3 cut(s)	870, 1007, 1131
FatI	CATG	3 cut(s)	866, 1003, 1127
FauNDI	CATATG	1 cut(s)	530
FblI	GTMKAC	1 cut(s)	644
Fnu4HI	GCNGC	9 cut(s)	93, 96, 99, 102, 105, 179, 834, 872, 875
FokI	GGATG	6 cut(s)	253, 258, 466, 571, 611, 1077
FriOI	GRGCYC	1 cut(s)	68
Fsp4HI	GCNGC	9 cut(s)	93, 96, 99, 102, 105, 179, 834, 872, 875
FspBI	CTAG	7 cut(s)	114, 189, 308, 621, 650, 1008, 1056
GlaI	GCGC	2 cut(s)	519, 1139
GluI	GCNGC	9 cut(s)	93, 96, 99, 102, 105, 179, 834, 872, 875
HaeII	RGCGCY	1 cut(s)	521
HaeIII	GGCC	2 cut(s)	66, 481
HapII	CCGG	1 cut(s)	74
HhaI	GCGC	2 cut(s)	520, 1140
Hin1II	CATG	3 cut(s)	870, 1007, 1131
Hin6I	GCGC	2 cut(s)	518, 1138
HinP1I	GCGC	2 cut(s)	518, 1138
HincII	GTYRAC	1 cut(s)	688
HindII	GTYRAC	1 cut(s)	688
HindIII	AAGCTT	1 cut(s)	1073
HinfI	GANTC	1 cut(s)	939
HpaI	GTTAAC	1 cut(s)	688
HpaII	CCGG	1 cut(s)	74
HphI	GGTGA	3 cut(s)	323, 871, 1020
Hpy166II	GTNNAC	4 cut(s)	645, 688, 913, 938
Hpy188I	TCNGA	3 cut(s)	123, 796, 944
Hpy188III	TCNNGA	6 cut(s)	628, 730, 848, 918, 974, 1080
Hpy8I	GTNNAC	4 cut(s)	645, 688, 913, 938
HpyAV	CCTTC	3 cut(s)	980, 1104, 1125
HpyCH4III	ACNGT	4 cut(s)	665, 772, 964, 1155
HpyCH4V	TGCA	5 cut(s)	234, 768, 809, 998, 1127
HpyF10VI	GCNNNNNNNGC	6 cut(s)	98, 101, 104, 399, 600, 1004
HpyF3I	CTNAG	5 cut(s)	120, 174, 657, 703, 941
Hsp92II	CATG	3 cut(s)	870, 1007, 1131
HspAI	GCGC	2 cut(s)	518, 1138
KspAI	GTTAAC	1 cut(s)	688
Kzo9I	GATC	6 cut(s)	10, 469, 671, 722, 791, 844
LmnI	GCTCC	4 cut(s)	325, 653, 830, 950
Lsp1109I	GCAGC	9 cut(s)	79, 82, 85, 88, 91, 165, 820, 858, 861
LweI	GCATC	3 cut(s)	22, 275, 633
MaeI	CTAG	7 cut(s)	114, 189, 308, 621, 650, 1008, 1056
MaeIII	GTNAC	1 cut(s)	958
MalI	GATC	6 cut(s)	12, 471, 673, 724, 793, 846
MbiI	CCGCTC	1 cut(s)	328
MboI	GATC	6 cut(s)	10, 469, 671, 722, 791, 844
MboII	GAAGA	3 cut(s)	5, 52, 102
MflI	RGATCY	5 cut(s)	10, 469, 722, 791, 844
MhlI	GDGCHC	3 cut(s)	68, 121, 528
MluCI	AATT	2 cut(s)	248, 419
MlyI	GAGTC	1 cut(s)	933
MnlI	CCTC	6 cut(s)	222, 238, 349, 492, 652, 726
MseI	TTAA	4 cut(s)	362, 407, 488, 687
MslI	CAYNNNNRTG	1 cut(s)	1109
MspI	CCGG	1 cut(s)	74
MspR9I	CCNGG	4 cut(s)	18, 75, 134, 522
Mva1269I	GAATGC	1 cut(s)	637
MvaI	CCWGG	3 cut(s)	18, 134, 522
MwoI	GCNNNNNNNGC	6 cut(s)	98, 101, 104, 399, 600, 1004
NciI	CCSGG	1 cut(s)	75
NdeI	CATATG	1 cut(s)	530
NdeII	GATC	6 cut(s)	10, 469, 671, 722, 791, 844
NlaIII	CATG	3 cut(s)	870, 1007, 1131
NlaIV	GGNNCC	2 cut(s)	66, 820
NspI	RCATGY	1 cut(s)	1007
PaqCI	CACCTGC	1 cut(s)	377
PctI	GAATGC	1 cut(s)	637
PflMI	CCANNNNNTGG	1 cut(s)	277
PkrI	GCNGC	9 cut(s)	94, 97, 100, 103, 106, 180, 835, 873, 876
PleI	GAGTC	1 cut(s)	933
PpsI	GAGTC	1 cut(s)	933
Psp6I	CCWGG	3 cut(s)	16, 132, 520
PspGI	CCWGG	3 cut(s)	16, 132, 520
PspN4I	GGNNCC	2 cut(s)	66, 820
PspOMI	GGGCCC	1 cut(s)	64
PspPI	GGNCC	3 cut(s)	64, 65, 661
PstNI	CAGNNNCTG	1 cut(s)	127
PsuI	RGATCY	5 cut(s)	10, 469, 722, 791, 844
RsaI	GTAC	4 cut(s)	50, 72, 88, 345
RsaNI	GTAC	4 cut(s)	49, 71, 87, 344
RseI	CAYNNNNRTG	1 cut(s)	1109
SaqAI	TTAA	4 cut(s)	362, 407, 488, 687
SatI	GCNGC	9 cut(s)	93, 96, 99, 102, 105, 179, 834, 872, 875
Sau3AI	GATC	6 cut(s)	10, 469, 671, 722, 791, 844
Sau96I	GGNCC	3 cut(s)	64, 65, 661
ScaI	AGTACT	1 cut(s)	88
SchI	GAGTC	1 cut(s)	933
ScrFI	CCNGG	4 cut(s)	18, 75, 134, 522
SduI	GDGCHC	3 cut(s)	68, 121, 528
SfaNI	GCATC	3 cut(s)	22, 275, 633
SinI	GGWCC	1 cut(s)	661
SmiMI	CAYNNNNRTG	1 cut(s)	1109
SmlI	CTYRAG	1 cut(s)	730
SmoI	CTYRAG	1 cut(s)	730
Sse9I	AATT	2 cut(s)	248, 419
SsiI	CCGC	3 cut(s)	35, 328, 736
SspMI	CTAG	7 cut(s)	114, 189, 308, 621, 650, 1008, 1056
StyD4I	CCNGG	4 cut(s)	16, 73, 132, 520
TaaI	ACNGT	4 cut(s)	665, 772, 964, 1155
TaqI	TCGA	1 cut(s)	566
TasI	AATT	2 cut(s)	248, 419
TatI	WGTACW	2 cut(s)	86, 343
Tru1I	TTAA	4 cut(s)	362, 407, 488, 687
Tru9I	TTAA	4 cut(s)	362, 407, 488, 687
TscAI	CASTG	2 cut(s)	775, 816
TseI	GCWGC	9 cut(s)	92, 95, 98, 101, 104, 178, 833, 871, 874
TspDTI	ATGAA	3 cut(s)	470, 762, 1107
TspGWI	ACGGA	1 cut(s)	571
TspRI	CASTG	2 cut(s)	775, 816
Van91I	CCANNNNNTGG	1 cut(s)	277
VpaK11BI	GGWCC	1 cut(s)	661
XapI	RAATTY	2 cut(s)	248, 419
XceI	RCATGY	1 cut(s)	1007
XcmI	CCANNNNNNNNNTGG	2 cut(s)	14, 474
XmiI	GTMKAC	1 cut(s)	644
XspI	CTAG	7 cut(s)	114, 189, 308, 621, 650, 1008, 1056
ZrmI	AGTACT	1 cut(s)	88

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.