Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0003598

Physical Location & Seq

Genomic Coordinates Reverse (-)

5803263 .. 5810398

Gene Structure 7136 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0067600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3210 bp

ATGTTTCGGATGTTCAGAGGAGGCAACGCCTCCGATGCCTCGCCGGAATCTTCCTCCTCTCCGTCGTCGTCGTCCTCGCCTTCGCCGCCGCAGCCGTCGCGGCCGGTGACCGGGCCGGCGAGGCCGATTCGACTCGTCTACGCCGACGAGAAAGGGAGGTTCCGGATGGATCCGGAAGCCGTCGCGGTGTTGCAGCTCGTTAAGGAGCCGATTGGTGTCGTCTCCGTCTGCGGTCGCGCTCGCCAGGGCAAGAGCTATATTCTCAACCAGATTCTTGGAAGGAGTAGTGGATTTCAAGTAGCATCGACTCATCGCCCATGTACTAAAGGACTATGGATGTGGAGTGCACCCTTGAAGAGAACTGCCCTTGATGGAACTGAATACAATCTCTTATTGTTGGATACTGAAGGAATAGATGCTTATGATCAGACAGGAACGTACAGCACACAAATATTTTCCTTGGCTGTTCTCTTATCCAGCATGTTCATTTATAATCAGATGGGTGGTATAGATGAAGCTTCACTTGATCGTCTTGCTCTTGTCACCCAAGTGACCAAACATATCCGTGTTAAAGCCTCTGGAGGAAGAACCACAGCCTCTGAAATTGGGCAGTTCTCCCCAGTTTTTGTCTGGCTTCTAAGGGACTTCTATCTCGACTTAGTAGAGGATGGTAGAAAGATAACACCCCGTGAGTATCTAGAGACTGCTTTGAGGCCTTTTGAAGGAAAACAAGACGTAGCTGCCAAAAATGAGATACGGGACTCCATTAGAGCTCTATTTCCAGATAGAGAATGCTTCACCCTTTTGCGGCCTGTGGACAAGGAAGAGGAGCTCCGGAGACTCGATCAAATTCAGTTGAACAAGTTAAGGCCTGAGTTTAGGTCAGGGCTGGATGCTTTGACAAGTTTTGTTTTTAAACGAACGAGGCCCAAGCAAGTTGGGGCCACTATGATGACAGGGCCAGTTCTAGTTGGTATCCTTCAGTCCTATCTTGATGCTCTTAATAATGGTGCAGTGCCTACCATCTCATCTTCATGGCAGAGTGTCGAAGAAGCAGAGTGCCGAAGAGCATATGATTCTGCTGTTGATGCTTATAGGTCTGCTTTTGACCGTTCAAAGTTGCCTGAAGAAGCTGCACTGAGGGAGGCTCATGAAGAGGCAGTCCAAAAATCACTGGCTGCTTTTAACGATTGTGCTGTAGGGGGTGGTCCAACAAGGAAAAAATATGAAGGGAATCTTCACAAACAGCTCAAAAAGAAATTTGAAGATTATAAGAAGAATGCATATATGGAGGCAGAGTTGCAATGTGTAAATGCTATACAAAGGATGGAAGGGAAGCTGAGGAGCACTTGCCATGCTAGTGATGCTAATATTGATAATGTTCTGAAGGTTCTTGGTGACCTTATGTCCGAGTATGAAAAGGCAAGTCGGGGTCCACTAAAATGGCAGCAACTGGCTTTCTTTTTAAGAAAGAGTTTGGAAGGTCCAATTCTTGATCTCATCATGAGGCAAATCAACAAAGTTGAATCACAGAATGGCACCTTGAGGTTGAGATCCCGTGCCATGGAAGATGAGTTGGGTTTACTGAAAAAGCGGGTAGAGGAAAGCAAGCAGTCTAAGATGGAGTATGTCAAACGCTACGAGGACGCTCTCAATGACAAGAACAAGCTAAATGATGAATACAATGTCCGTTTTAACAACTTGCAAGGAAATAATACTTCTCTGCGAGATCAGTGTGCTAGCTTGCGTAAGAGTTTGGATTCTGTAAAAGCAGAAGCAGGGGAATGGCAAAGAAAATATGAGCATGTTCTCTCCAAGCAGAAGGCTGAGGAAGATCAAGCTGGTTCCGAAATCGCGGTTCTCAAGTCTCGATGCAGTGCTGGCGAAGCAAGGCTGGCTGCTGCAAAGGAACAAGCTCAGTCTGCCCAAGAGGAGGCAGAGGACTGGAAACGCAAATATGACATTGCTTTTAGAGAGGCAAAAGCTGCTCTAGAGAAGGCAGCAATTGTCCAAGAACGTTCCAGTAAGGAAACACAAAGGAGAGAAGATGCTTTGAGGGAAGAATTCACGAGTAGTTTGGCTGCGAAGGAGGAAGACATAAAGGAAAAGACAGCAAAGATTGAATATGCTGAGCAGTGCTTAACGACTCTAAAAATGGAACTAAAGGCTGCCAGGTCCAAAATTGATAGTTATGATGCTGAAATATCATCAGGAAAGCTTGAAATCAAGGAGCTGAGCAGAAAATTAGAAGCTGCAAATGACAAGGCCAATTCATTTGAAAGAGAAAAGAAGATACTGGAGCAGGAGAAGATCCATCTAAAGCAGACGTATGAAACTGAGATCAAAAGATTGGATGAAGTCCAAGAAAGGTGTAAAATTGCTGAAAAAGAAGCCACTAGAGCAACTGATATTGCTGATAAAGCACGAGCTCAAGCAGACATGGCTCAAAAGGAAAAGGGGGACATGCAGAGGCTGGCAATAGAAAGGTTGGCTCAAATTGAGAGGGCTGAGAGGCATATTGAAAGTCTACAGAGGGAGAAAAGAGACTTGGAAGTTGAGTTGGACGGAATCCGTGCATCAGAAAGGGGAGCTCATCACAAAATTTCTCTACTGGAGGCAAGAGTTGAAGAAAGGGAGAAAGAAATAGAATCATTATTGGAGTCGAACAATGAGCAGAGAACTAGTACAGTTCAAGTCCTTCAAGGTCTTCTGGACAGTGAACGTGCAGCACATGCAGACGCAAACAATAGGGCAGAAGCCCTCTCTCATCAGCTACAATCTGCACAAGCAAAACTCGATAAACTCCAGCAAGAATTGACTTCTGTTCGCCTGAATGAAACTGCATTGGATAGTAAGCTTAGGACTGCTTCACATGGGAAGCGTTCAAGGGTAGATGACTATGACATGGACGTGGACTCTGTTCAAGACGGGGAATTGAGTGACCGGATCTTAAGAGTAAATAAGAAGTCTAGGAGTACTACTAGCCCTCTGAAGCATGTGCAAACAGAAGATGGTGGTTCAGTATTCCGGGGAGATGAGGATAGCCGCAGTCAGCAAACCAATCCAGAAGATTACACAAAGTTCACAGTCCAGAAACTGAAGCAAGAGCTAACAAAGCATAATTTTGGTGCTGAGCTGCTGCAGTTAAGGAACCCCAACAAAAGGGAGATCCTCACACTATATGAGAAGTGCATTCTTCAAAAGTCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005682 GO:0006139 GO:0006396 GO:0006464 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0019538 GO:0030532 GO:0031461 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043687 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0071011 GO:0071013 GO:0071704 GO:0080008 GO:0090304 GO:0097159 GO:0097525 GO:0120114 GO:1901360 GO:1901363 GO:1901564 GO:1902494 GO:1990234 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

1069

Amino Acids

121.04

Weight (kDa)

7.8

Isoelectric Point (pI)

56.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GBP	PF02263	52 - 309	5.6e-63	Guanylate-binding protein, N-terminal domain
GBP_C	PF02841	314 - 645	3.6e-31	Guanylate-binding protein, C-terminal domain
Tropomyosin	PF00261	582 - 790	1.8e-06	Tropomyosin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003598)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G17370 AT5G17370
fragaria_vesca	FvH4_3g13240 FvH4_3g13240 FvH4_3g13240 FvH4_3g13240 FvH4_3g13240
malus_domestica	MD05G1243800.v1.1
prunus_persica	Prupe.4G119800_v2.0.a1 Prupe.4G119800_v2.0.a1 Prupe.4G119800_v2.0.a1 Prupe.4G119800_v2.0.a1
pyrus_communis	pycom05g22030 pycom10g18960
rosa_chinensis	RchiOBHm_Chr5g0021601 RchiOBHm_Chr5g0021611 RchiOBHm_Chr5g0021701
rosa_laevigata	RLG00000032617
rosa_multiflora	Rmu_sc0009984.1_g000013 Rmu_sc0016972.1_g000002
rosa_roxburghii	Rroxscaffold_1G00057050 Rroxscaffold_2G00125890 Rroxscaffold_3G00228540 Rroxscaffold_3G00229610 Rroxscaffold_4G00317430
rosa_rugosa	Rorug05G0067600 Rorug05G0067700 Rorug05G0067800
rosa_samantha	Rh5AG157000 Rh5BG156500 Rh5CG170800 Rh5DG156800
rosa_wichuraiana	Rw0G000530 Rw0G007040 Rw5G013950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	492, 1272
AccB1I	GGYRCC	1 cut(s)	1538
AccI	GTMKAC	2 cut(s)	138, 2527
AccII	CGCG	4 cut(s)	100, 185, 237, 1856
AccIII	TCCGGA	3 cut(s)	162, 172, 834
AciI	CCGC	9 cut(s)	86, 89, 100, 185, 231, 808, 1594, 1856, 3046
AclI	AACGTT	1 cut(s)	2017
AclWI	GGATC	6 cut(s)	164, 177, 1548, 2305, 2954, 3163
AcoI	YGGCCR	1 cut(s)	101
AcsI	RAATTY	4 cut(s)	849, 1259, 2063, 2601
AcuI	CTGAAG	6 cut(s)	426, 965, 1146, 1406, 3011, 3119
AdeI	CACNNNGTG	1 cut(s)	689
AfaI	GTAC	4 cut(s)	322, 440, 2686, 2977
AfiI	CCNNNNNNNGG	6 cut(s)	110, 722, 807, 1564, 1933, 3162
AflII	CTTAAG	1 cut(s)	2950
AhdI	GACNNNNNGTC	1 cut(s)	1405
AhlI	ACTAGT	1 cut(s)	2681
AjiI	CACGTC	1 cut(s)	2911
AjnI	CCWGG	2 cut(s)	243, 2171
AjuI	GAANNNNNNNTTGG	2 cut(s)	2531, 2563
AleI	CACNNNNGTG	1 cut(s)	548
Alw21I	GWGCWC	6 cut(s)	349, 775, 834, 1349, 2431, 2593
Alw26I	GTCTC	5 cut(s)	226, 695, 832, 1872, 2538
Alw44I	GTGCAC	1 cut(s)	345
AlwI	GGATC	6 cut(s)	164, 177, 1548, 2305, 2954, 3163
AlwNI	CAGNNNCTG	4 cut(s)	599, 1453, 2473, 3097
Aor13HI	TCCGGA	3 cut(s)	162, 172, 834
ApaLI	GTGCAC	1 cut(s)	345
ApoI	RAATTY	4 cut(s)	849, 1259, 2063, 2601
AspLEI	GCGC	1 cut(s)	239
AspS9I	GGNCC	8 cut(s)	113, 927, 942, 959, 1208, 1433, 1484, 2175
AsuC2I	CCSGG	2 cut(s)	112, 3029
AsuHPI	GGTGA	4 cut(s)	118, 535, 790, 1409
AsuNHI	GCTAGC	1 cut(s)	1739
AvaII	GGWCC	4 cut(s)	1208, 1433, 1484, 2175
BaeGI	GKGCMC	1 cut(s)	349
BamHI	GGATCC	1 cut(s)	169
BanI	GGYRCC	1 cut(s)	1538
BanII	GRGCYC	4 cut(s)	775, 834, 2431, 2593
BauI	CACGAG	2 cut(s)	2068, 2424
BbsI	GAAGAC	2 cut(s)	2100, 2699
Bbv12I	GWGCWC	6 cut(s)	349, 775, 834, 1349, 2431, 2593
BbvCI	CCTCAGC	2 cut(s)	1340, 1827
BccI	CCATC	9 cut(s)	160, 365, 493, 662, 1031, 1321, 1615, 2322, 3005
BceAI	ACGGC	2 cut(s)	79, 164
BciT130I	CCWGG	2 cut(s)	245, 2173
BciVI	GTATCC	2 cut(s)	394, 986
BclI	TGATCA	1 cut(s)	424
BcnI	CCSGG	2 cut(s)	112, 3029
BcoDI	GTCTC	5 cut(s)	226, 695, 832, 1872, 2538
BcuI	ACTAGT	1 cut(s)	2681
BfaI	CTAG	9 cut(s)	698, 968, 1359, 1740, 1991, 2397, 2682, 2970, 2982
BfmI	CTRYAG	3 cut(s)	1197, 2528, 3140
BfrI	CTTAAG	1 cut(s)	2950
BfuI	GTATCC	2 cut(s)	394, 986
BglI	GCCNNNNNGGC	2 cut(s)	100, 121
BlpI	GCTNAGC	3 cut(s)	2130, 2234, 3132
BmcAI	AGTACT	1 cut(s)	2977
Bme1390I	CCNGG	4 cut(s)	112, 245, 2173, 3029
Bme18I	GGWCC	4 cut(s)	1208, 1433, 1484, 2175
BmeRI	GACNNNNNGTC	1 cut(s)	1405
BmgBI	CACGTC	1 cut(s)	2911
BmgT120I	GGNCC	8 cut(s)	113, 927, 942, 959, 1208, 1433, 1484, 2175
BmiI	GGNNCC	8 cut(s)	161, 171, 207, 943, 1434, 1540, 1846, 3152
BmrFI	CCNGG	4 cut(s)	112, 245, 2173, 3029
BmrI	ACTGGG	1 cut(s)	614
BmtI	GCTAGC	1 cut(s)	1743
BmuI	ACTGGG	1 cut(s)	614
BpiI	GAAGAC	2 cut(s)	2100, 2699
BplI	GAGNNNNNCTC	2 cut(s)	1132, 1164
BpmI	CTGGAG	4 cut(s)	600, 2318, 2633, 2789
Bpu10I	CCTNAGC	3 cut(s)	1340, 1827, 2858
Bpu1102I	GCTNAGC	3 cut(s)	2130, 2234, 3132
BpuEI	CTTGAG	3 cut(s)	1564, 1847, 2415
BpuMI	CCSGG	2 cut(s)	112, 3029
BsaJI	CCNNGG	4 cut(s)	244, 459, 1563, 3028
BsaWI	WCCGGW	4 cut(s)	162, 172, 834, 2943
BsaXI	ACNNNNNCTCC	2 cut(s)	1283, 1313
Bsc4I	CCNNNNNNNGG	6 cut(s)	110, 722, 807, 1564, 1933, 3162
Bse118I	RCCGGY	2 cut(s)	103, 115
Bse1I	ACTGG	8 cut(s)	620, 962, 1179, 1458, 1949, 2022, 2301, 2616
Bse3DI	GCAATG	2 cut(s)	1310, 1962
BseAI	TCCGGA	3 cut(s)	162, 172, 834
BseBI	CCWGG	2 cut(s)	245, 2173
BseDI	CCNNGG	4 cut(s)	244, 459, 1563, 3028
BseGI	GGATG	7 cut(s)	15, 171, 342, 673, 898, 1332, 2359
BseLI	CCNNNNNNNGG	6 cut(s)	110, 722, 807, 1564, 1933, 3162
BseMI	GCAATG	2 cut(s)	1310, 1962
BseNI	ACTGG	8 cut(s)	620, 962, 1179, 1458, 1949, 2022, 2301, 2616
BseRI	GAGGAG	5 cut(s)	33, 46, 842, 1357, 1946
BseSI	GKGCMC	1 cut(s)	349
BseX3I	CGGCCG	1 cut(s)	101
BsgI	GTGCAG	4 cut(s)	1032, 1119, 2745, 2766
Bsh1236I	CGCG	4 cut(s)	100, 185, 237, 1856
Bsh1285I	CGRYCG	2 cut(s)	104, 235
BshNI	GGYRCC	1 cut(s)	1538
BsiEI	CGRYCG	2 cut(s)	104, 235
BsiHKAI	GWGCWC	6 cut(s)	349, 775, 834, 1349, 2431, 2593
BsiSI	CCGG	9 cut(s)	44, 104, 111, 116, 163, 173, 835, 2944, 3028
BslFI	GGGAC	3 cut(s)	656, 773, 2474
BslI	CCNNNNNNNGG	6 cut(s)	110, 722, 807, 1564, 1933, 3162
BsmAI	GTCTC	5 cut(s)	226, 695, 832, 1872, 2538
BsmBI	CGTCTC	1 cut(s)	226
BsmFI	GGGAC	3 cut(s)	656, 773, 2474
BsmI	GAATGC	3 cut(s)	797, 1285, 3192
Bsp1286I	GDGCHC	6 cut(s)	349, 775, 834, 1349, 2431, 2593
Bsp13I	TCCGGA	3 cut(s)	162, 172, 834
Bsp1720I	GCTNAGC	3 cut(s)	2130, 2234, 3132
Bsp19I	CCATGG	1 cut(s)	1563
BspACI	CCGC	9 cut(s)	86, 89, 100, 185, 231, 808, 1594, 1856, 3046
BspEI	TCCGGA	3 cut(s)	162, 172, 834
BspFNI	CGCG	4 cut(s)	100, 185, 237, 1856
BspHI	TCATGA	2 cut(s)	1150, 1503
BspLI	GGNNCC	8 cut(s)	161, 171, 207, 943, 1434, 1540, 1846, 3152
BspMAI	CTGCAG	1 cut(s)	3144
BspOI	GCTAGC	1 cut(s)	1743
BspPI	GGATC	6 cut(s)	164, 177, 1548, 2305, 2954, 3163
BspQI	GCTCTTC	1 cut(s)	1060
BspT107I	GGYRCC	1 cut(s)	1538
BspTI	CTTAAG	1 cut(s)	2950
BsrDI	GCAATG	2 cut(s)	1310, 1962
BsrFI	RCCGGY	2 cut(s)	103, 115
BsrI	ACTGG	8 cut(s)	620, 962, 1179, 1458, 1949, 2022, 2301, 2616
BssAI	RCCGGY	2 cut(s)	103, 115
BssECI	CCNNGG	4 cut(s)	244, 459, 1563, 3028
BssSI	CACGAG	2 cut(s)	2068, 2424
BssT1I	CCWWGG	2 cut(s)	459, 1563
Bst2BI	CACGAG	2 cut(s)	2068, 2424
Bst2UI	CCWGG	2 cut(s)	245, 2173
Bst4CI	ACNGT	4 cut(s)	1112, 2689, 2717, 3088
Bst6I	CTCTTC	4 cut(s)	350, 819, 1060, 1149
BstAFI	CTTAAG	1 cut(s)	2950
BstAPI	GCANNNNNTGC	2 cut(s)	1985, 2732
BstC8I	GCNNGC	8 cut(s)	117, 241, 1610, 1741, 1745, 1882, 1896, 2475
BstDSI	CCRYGG	1 cut(s)	1563
BstEII	GGTNACC	2 cut(s)	106, 1397
BstENI	CCTNNNNNAGG	1 cut(s)	720
BstF5I	GGATG	7 cut(s)	15, 171, 342, 673, 898, 1332, 2359
BstFNI	CGCG	4 cut(s)	100, 185, 237, 1856
BstHHI	GCGC	1 cut(s)	239
BstMAI	GTCTC	5 cut(s)	226, 695, 832, 1872, 2538
BstMCI	CGRYCG	2 cut(s)	104, 235
BstNI	CCWGG	2 cut(s)	245, 2173
BstNSI	RCATGY	5 cut(s)	484, 1808, 2467, 2735, 2999
BstPI	GGTNACC	2 cut(s)	106, 1397
BstSCI	CCNGG	4 cut(s)	110, 243, 2171, 3027
BstSFI	CTRYAG	3 cut(s)	1197, 2528, 3140
BstSLI	GKGCMC	1 cut(s)	349
BstUI	CGCG	4 cut(s)	100, 185, 237, 1856
BstV2I	GAAGAC	2 cut(s)	2100, 2699
BstX2I	RGATCY	5 cut(s)	169, 1553, 2310, 2946, 3168
BstXI	CCANNNNNNTGG	2 cut(s)	275, 1443
BstYI	RGATCY	5 cut(s)	169, 1553, 2310, 2946, 3168
BstZI	CGGCCG	1 cut(s)	101
BsuI	GTATCC	2 cut(s)	394, 986
BtgI	CCRYGG	1 cut(s)	1563
BtgZI	GCGATG	1 cut(s)	296
BtrI	CACGTC	1 cut(s)	2911
BtsCI	GGATG	7 cut(s)	15, 171, 342, 673, 898, 1332, 2359
BtsI	GCAGTG	3 cut(s)	1020, 1882, 2141
BtsIMutI	CAGTG	7 cut(s)	1020, 1136, 1172, 1739, 1882, 2141, 2722
Cac8I	GCNNGC	8 cut(s)	117, 241, 1610, 1741, 1745, 1882, 1896, 2475
CaiI	CAGNNNCTG	4 cut(s)	599, 1453, 2473, 3097
CciI	TCATGA	2 cut(s)	1150, 1503
CfoI	GCGC	1 cut(s)	239
Cfr10I	RCCGGY	2 cut(s)	103, 115
Cfr13I	GGNCC	8 cut(s)	113, 927, 942, 959, 1208, 1433, 1484, 2175
CseI	GACGC	2 cut(s)	1655, 2747
Csp6I	GTAC	4 cut(s)	321, 439, 2685, 2976
CviQI	GTAC	4 cut(s)	321, 439, 2685, 2976
DraI	TTTAAA	1 cut(s)	916
DraIII	CACNNNGTG	1 cut(s)	689
DriI	GACNNNNNGTC	1 cut(s)	1405
EaeI	YGGCCR	1 cut(s)	101
EagI	CGGCCG	1 cut(s)	101
Eam1104I	CTCTTC	4 cut(s)	350, 819, 1060, 1149
Eam1105I	GACNNNNNGTC	1 cut(s)	1405
EarI	CTCTTC	4 cut(s)	350, 819, 1060, 1149
Ecl136II	GAGCTC	4 cut(s)	773, 832, 2429, 2591
EclXI	CGGCCG	1 cut(s)	101
Eco130I	CCWWGG	2 cut(s)	459, 1563
Eco147I	AGGCCT	2 cut(s)	715, 871
Eco24I	GRGCYC	4 cut(s)	775, 834, 2431, 2593
Eco47I	GGWCC	4 cut(s)	1208, 1433, 1484, 2175
Eco52I	CGGCCG	1 cut(s)	101
Eco53kI	GAGCTC	4 cut(s)	773, 832, 2429, 2591
Eco57I	CTGAAG	6 cut(s)	426, 965, 1146, 1406, 3011, 3119
Eco91I	GGTNACC	2 cut(s)	106, 1397
EcoICRI	GAGCTC	4 cut(s)	773, 832, 2429, 2591
EcoNI	CCTNNNNNAGG	1 cut(s)	720
EcoO65I	GGTNACC	2 cut(s)	106, 1397
EcoRI	GAATTC	1 cut(s)	2063
EcoRII	CCWGG	2 cut(s)	243, 2171
EcoT14I	CCWWGG	2 cut(s)	459, 1563
EcoT22I	ATGCAT	1 cut(s)	1285
EcoT38I	GRGCYC	4 cut(s)	775, 834, 2431, 2593
ErhI	CCWWGG	2 cut(s)	459, 1563
Esp3I	CGTCTC	1 cut(s)	226
FalI	AAGNNNNNCTT	4 cut(s)	507, 539, 1221, 1253
FaqI	GGGAC	3 cut(s)	656, 773, 2474
FauI	CCCGC	1 cut(s)	1587
FauNDI	CATATG	1 cut(s)	1072
FbaI	TGATCA	1 cut(s)	424
FblI	GTMKAC	2 cut(s)	138, 2527
FokI	GGATG	7 cut(s)	22, 178, 349, 680, 905, 1339, 2366
FriOI	GRGCYC	4 cut(s)	775, 834, 2431, 2593
FspBI	CTAG	9 cut(s)	698, 968, 1359, 1740, 1991, 2397, 2682, 2970, 2982
GlaI	GCGC	1 cut(s)	238
GsuI	CTGGAG	4 cut(s)	600, 2318, 2633, 2789
HapII	CCGG	9 cut(s)	44, 104, 111, 116, 163, 173, 835, 2944, 3028
HgaI	GACGC	2 cut(s)	1655, 2747
HhaI	GCGC	1 cut(s)	239
Hin6I	GCGC	1 cut(s)	237
HinP1I	GCGC	1 cut(s)	237
HindIII	AAGCTT	3 cut(s)	516, 2216, 2855
HpaII	CCGG	9 cut(s)	44, 104, 111, 116, 163, 173, 835, 2944, 3028
HphI	GGTGA	4 cut(s)	118, 535, 790, 1409
Hpy166II	GTNNAC	9 cut(s)	139, 347, 817, 1436, 1583, 2528, 2720, 2914, 3084
Hpy8I	GTNNAC	9 cut(s)	139, 347, 817, 1436, 1583, 2528, 2720, 2914, 3084
Hpy99I	CGWCG	6 cut(s)	67, 70, 73, 100, 149, 185
HpyCH4III	ACNGT	4 cut(s)	1112, 2689, 2717, 3088
HpyCH4IV	ACGT	6 cut(s)	437, 735, 2017, 2327, 2722, 2910
HpySE526I	ACGT	6 cut(s)	437, 735, 2017, 2327, 2722, 2910
HspAI	GCGC	1 cut(s)	237
Kpn2I	TCCGGA	3 cut(s)	162, 172, 834
KroI	GCCGGC	1 cut(s)	115
KroNI	GCCGGC	1 cut(s)	117
Ksp22I	TGATCA	1 cut(s)	424
LguI	GCTCTTC	1 cut(s)	1060
LmnI	GCTCC	7 cut(s)	205, 829, 837, 1344, 2230, 2299, 2588
MaeI	CTAG	9 cut(s)	698, 968, 1359, 1740, 1991, 2397, 2682, 2970, 2982
MaeII	ACGT	6 cut(s)	437, 735, 2017, 2327, 2722, 2910
MaeIII	GTNAC	5 cut(s)	106, 541, 550, 1397, 2939
MfeI	CAATTG	1 cut(s)	2004
MflI	RGATCY	5 cut(s)	169, 1553, 2310, 2946, 3168
MhlI	GDGCHC	6 cut(s)	349, 775, 834, 1349, 2431, 2593
MlyI	GAGTC	7 cut(s)	126, 301, 755, 834, 2140, 2669, 2909
MmeI	TCCRAC	3 cut(s)	378, 1235, 2541
Mph1103I	ATGCAT	1 cut(s)	1285
MroI	TCCGGA	3 cut(s)	162, 172, 834
MroNI	GCCGGC	1 cut(s)	115
MslI	CAYNNNNRTG	7 cut(s)	548, 564, 950, 1033, 1359, 1441, 2909
MspCI	CTTAAG	1 cut(s)	2950
MspI	CCGG	9 cut(s)	44, 104, 111, 116, 163, 173, 835, 2944, 3028
MspR9I	CCNGG	4 cut(s)	112, 245, 2173, 3029
MunI	CAATTG	1 cut(s)	2004
Mva1269I	GAATGC	3 cut(s)	797, 1285, 3192
MvaI	CCWGG	2 cut(s)	245, 2173
MvnI	CGCG	4 cut(s)	100, 185, 237, 1856
NaeI	GCCGGC	1 cut(s)	117
NciI	CCSGG	2 cut(s)	112, 3029
NcoI	CCATGG	1 cut(s)	1563
NdeI	CATATG	1 cut(s)	1072
NgoMIV	GCCGGC	1 cut(s)	115
NheI	GCTAGC	1 cut(s)	1739
NlaIV	GGNNCC	8 cut(s)	161, 171, 207, 943, 1434, 1540, 1846, 3152
NmuCI	GTSAC	5 cut(s)	106, 541, 550, 1397, 2939
NsiI	ATGCAT	1 cut(s)	1285
NspI	RCATGY	5 cut(s)	484, 1808, 2467, 2735, 2999
OliI	CACNNNNGTG	1 cut(s)	548
PagI	TCATGA	2 cut(s)	1150, 1503
PceI	AGGCCT	2 cut(s)	715, 871
PciSI	GCTCTTC	1 cut(s)	1060
PcsI	WCGNNNNNNNCGW	1 cut(s)	141
PctI	GAATGC	3 cut(s)	797, 1285, 3192
PdiI	GCCGGC	1 cut(s)	117
PfeI	GAWTC	9 cut(s)	47, 127, 271, 1076, 1234, 1526, 1760, 2568, 2648
PleI	GAGTC	7 cut(s)	126, 301, 755, 834, 2140, 2668, 2909
PpsI	GAGTC	7 cut(s)	126, 301, 755, 834, 2140, 2668, 2909
PsiI	TTATAA	2 cut(s)	492, 1272
Psp124BI	GAGCTC	4 cut(s)	775, 834, 2431, 2593
Psp1406I	AACGTT	1 cut(s)	2017
Psp6I	CCWGG	2 cut(s)	243, 2171
PspEI	GGTNACC	2 cut(s)	106, 1397
PspGI	CCWGG	2 cut(s)	243, 2171
PspN4I	GGNNCC	8 cut(s)	161, 171, 207, 943, 1434, 1540, 1846, 3152
PspPI	GGNCC	8 cut(s)	113, 927, 942, 959, 1208, 1433, 1484, 2175
PstI	CTGCAG	1 cut(s)	3144
PstNI	CAGNNNCTG	4 cut(s)	599, 1453, 2473, 3097
PsuI	RGATCY	5 cut(s)	169, 1553, 2310, 2946, 3168
RsaI	GTAC	4 cut(s)	322, 440, 2686, 2977
RsaNI	GTAC	4 cut(s)	321, 439, 2685, 2976
RseI	CAYNNNNRTG	7 cut(s)	548, 564, 950, 1033, 1359, 1441, 2909
SacI	GAGCTC	4 cut(s)	775, 834, 2431, 2593
SapI	GCTCTTC	1 cut(s)	1060
Sau96I	GGNCC	8 cut(s)	113, 927, 942, 959, 1208, 1433, 1484, 2175
ScaI	AGTACT	1 cut(s)	2977
SchI	GAGTC	7 cut(s)	126, 301, 755, 834, 2140, 2669, 2909
ScrFI	CCNGG	4 cut(s)	112, 245, 2173, 3029
SduI	GDGCHC	6 cut(s)	349, 775, 834, 1349, 2431, 2593
SfcI	CTRYAG	3 cut(s)	1197, 2528, 3140
SfiI	GGCCNNNNNGGCC	1 cut(s)	121
SinI	GGWCC	4 cut(s)	1208, 1433, 1484, 2175
SmiMI	CAYNNNNRTG	7 cut(s)	548, 564, 950, 1033, 1359, 1441, 2909
SmlI	CTYRAG	4 cut(s)	1543, 1862, 2430, 2950
SmoI	CTYRAG	4 cut(s)	1543, 1862, 2430, 2950
SpeI	ACTAGT	1 cut(s)	2681
SseBI	AGGCCT	2 cut(s)	715, 871
SsiI	CCGC	9 cut(s)	86, 89, 100, 185, 231, 808, 1594, 1856, 3046
SspI	AATATT	2 cut(s)	453, 1372
SspMI	CTAG	9 cut(s)	698, 968, 1359, 1740, 1991, 2397, 2682, 2970, 2982
SstI	GAGCTC	4 cut(s)	775, 834, 2431, 2593
StuI	AGGCCT	2 cut(s)	715, 871
StyD4I	CCNGG	4 cut(s)	110, 243, 2171, 3027
StyI	CCWWGG	2 cut(s)	459, 1563
TaaI	ACNGT	4 cut(s)	1112, 2689, 2717, 3088
TaiI	ACGT	6 cut(s)	440, 738, 2020, 2330, 2725, 2913
TaqI	TCGA	8 cut(s)	130, 305, 654, 843, 1047, 1870, 2663, 2796
TatI	WGTACW	3 cut(s)	320, 2684, 2975
TauI	GCSGC	5 cut(s)	88, 91, 103, 811, 3048
TfiI	GAWTC	9 cut(s)	47, 127, 271, 1076, 1234, 1526, 1760, 2568, 2648
TscAI	CASTG	7 cut(s)	1020, 1143, 1179, 1739, 1882, 2141, 2722
TseFI	GTSAC	5 cut(s)	106, 541, 550, 1397, 2939
Tsp45I	GTSAC	5 cut(s)	106, 541, 550, 1397, 2939
TspGWI	ACGGA	6 cut(s)	51, 214, 554, 1679, 2561, 2580
TspRI	CASTG	7 cut(s)	1020, 1143, 1179, 1739, 1882, 2141, 2722
Vha464I	CTTAAG	1 cut(s)	2950
VneI	GTGCAC	1 cut(s)	345
VpaK11BI	GGWCC	4 cut(s)	1208, 1433, 1484, 2175
XagI	CCTNNNNNAGG	1 cut(s)	720
XapI	RAATTY	4 cut(s)	849, 1259, 2063, 2601
XbaI	TCTAGA	2 cut(s)	697, 1990
XceI	RCATGY	5 cut(s)	484, 1808, 2467, 2735, 2999
XcmI	CCANNNNNNNNNTGG	1 cut(s)	627
XmiI	GTMKAC	2 cut(s)	138, 2527
XspI	CTAG	9 cut(s)	698, 968, 1359, 1740, 1991, 2397, 2682, 2970, 2982
ZrmI	AGTACT	1 cut(s)	2977
Zsp2I	ATGCAT	1 cut(s)	1285

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.