Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0003598

Physical Location & Seq

Genomic Coordinates Forward (+)

15907216 .. 16045542

Gene Structure 138327 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG170800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1140 bp

ATGCCCCAAGATCTTCCTGGGTTTTATTATGATGCGGAGAAGAATAGGTACTTCCCCAACAAGGGCCCAGTACCGGGTTCTCGTAGTACTGCTGCTTCTTCTAGTGCTCAGAAACTGAACCAGGAAGCCAACAAATGTAAGCTAACAAAAGTAAGAACTTCTAAGCTGCTTCAGGCTAGGGAGTTATATGGTAATGTCATTGCTTCCAGTAAAGGGAGGTGCAACTTCAAGGAGGAATTCCAAAAGGCACAAGCATCCCATCCTGTGGTTTGGAAGTATCAGGGAACAAACAAGCTAGGTGATGGTGCTTTGGAGCGGATAAACATTGATGTACAGACAGGAGAGGGTTTAACTGGTACAGATTTTCTCTTAGCAGGTGGCAGAAATGGCTCTTTAAGTTTATTTGAATTCGGAAAAGTCGGGCAGGGTTTTCATTATGGGATGAAATGCTTGCCTGATCTTGTCTGGCCTCTCTTAAACAAAAGTCAAGTAGAATGTAGAAAAGCGCCTGGGCACATATGGAGACCAGCTCAAAATACACCACGGATGTCATCGAGTATATCTTGTATAAAAACATTTGGCAAGCACAGCACAGAAAATGACGGTTCTAGCATCCGGAATGCTCTGGTATCTACACTAGGAGCTGAGGACTGTGGTGGATCACTTTTTGTTATTAACCTTAGTGAACTCTTAGATTTTCGTCCAAATAGATCTATCTTAAGGCGGAACATTGATGAAGTTGCGACTTTCAACTGCACTGTTTGGACAGCAGATTGTAGATCTGATGGGAGTCATGCAGTGATTGGAACCAATCTGGGAGCTGCTTTGGTAGATCTGGAAACTGGGGTGAAATCATGGCTGCTGCGTAGTAAAAGTGATGTTTTGGCACAGCAACTTGTTCACTCGGGAAATGTTGTTTTATGTGGACTCAGAAATGGAGCAATTGTAACGGTTGATGTTCGTGAGAAACGGGAAGGATTTTCTGCAAGACATGCTAGTCATAGAATACGGCACTCACCTTTGGATACCACTCCTGGAAAATCTAGTGAAAAATGGTTCAAGCTTTCTGGAAATATACATCCTTCTCATACCATAAAAATGCCTTCATCTATTGCATGGTTAGTGCGCTTTATTATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005682 GO:0006139 GO:0006396 GO:0006464 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0019538 GO:0030532 GO:0031461 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043687 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0071011 GO:0071013 GO:0071704 GO:0080008 GO:0090304 GO:0097159 GO:0097525 GO:0120114 GO:1901360 GO:1901363 GO:1901564 GO:1902494 GO:1990234 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

379

Amino Acids

41.61

Weight (kDa)

9.54

Isoelectric Point (pI)

45.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003598)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G17370 AT5G17370
fragaria_vesca	FvH4_3g13240 FvH4_3g13240 FvH4_3g13240 FvH4_3g13240 FvH4_3g13240
malus_domestica	MD05G1243800.v1.1
prunus_persica	Prupe.4G119800_v2.0.a1 Prupe.4G119800_v2.0.a1 Prupe.4G119800_v2.0.a1 Prupe.4G119800_v2.0.a1
pyrus_communis	pycom05g22030 pycom10g18960
rosa_chinensis	RchiOBHm_Chr5g0021601 RchiOBHm_Chr5g0021611 RchiOBHm_Chr5g0021701
rosa_laevigata	RLG00000032617
rosa_multiflora	Rmu_sc0009984.1_g000013 Rmu_sc0016972.1_g000002
rosa_roxburghii	Rroxscaffold_1G00057050 Rroxscaffold_2G00125890 Rroxscaffold_3G00228540 Rroxscaffold_3G00229610 Rroxscaffold_4G00317430
rosa_rugosa	Rorug05G0067600 Rorug05G0067700 Rorug05G0067800
rosa_samantha	Rh5AG157000 Rh5BG156500 Rh5CG170800 Rh5DG156800
rosa_wichuraiana	Rw0G000530 Rw0G007040 Rw5G013950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	365
AasI	GACNNNNNNGTC	1 cut(s)	996
Acc36I	ACCTGC	1 cut(s)	365
AccB7I	CCANNNNNTGG	1 cut(s)	265
AccBSI	CCGCTC	1 cut(s)	316
AccIII	TCCGGA	1 cut(s)	615
AciI	CCGC	3 cut(s)	35, 316, 724
AclWI	GGATC	1 cut(s)	667
AcsI	RAATTY	2 cut(s)	236, 407
AcuI	CTGAAG	1 cut(s)	155
AfaI	GTAC	5 cut(s)	50, 72, 88, 333, 358
AfiI	CCNNNNNNNGG	6 cut(s)	61, 62, 73, 74, 213, 265
AflII	CTTAAG	1 cut(s)	718
AgsI	TTSAA	4 cut(s)	229, 407, 751, 1060
AjnI	CCWGG	4 cut(s)	16, 120, 508, 1033
AluBI	AGCT	7 cut(s)	142, 166, 295, 530, 644, 821, 1063
AluI	AGCT	7 cut(s)	142, 166, 295, 530, 644, 821, 1063
Alw21I	GWGCWC	1 cut(s)	109
Alw26I	GTCTC	1 cut(s)	517
AlwI	GGATC	1 cut(s)	667
AlwNI	CAGNNNCTG	1 cut(s)	115
Ama87I	CYCGRG	1 cut(s)	904
Aor13HI	TCCGGA	1 cut(s)	615
AoxI	GGCC	2 cut(s)	64, 467
ApaI	GGGCCC	1 cut(s)	68
ApeKI	GCWGC	5 cut(s)	92, 166, 821, 859, 862
ApoI	RAATTY	2 cut(s)	236, 407
AspLEI	GCGC	2 cut(s)	508, 1128
AspS9I	GGNCC	2 cut(s)	64, 65
AsuC2I	CCSGG	1 cut(s)	75
AsuHPI	GGTGA	3 cut(s)	311, 859, 1008
AvaI	CYCGRG	1 cut(s)	904
BaeGI	GKGCMC	2 cut(s)	68, 516
BanII	GRGCYC	1 cut(s)	68
BarI	GAAGNNNNNNTAC	4 cut(s)	32, 64, 79, 111
Bbv12I	GWGCWC	1 cut(s)	109
BbvCI	CCTCAGC	1 cut(s)	645
BbvI	GCAGC	5 cut(s)	79, 153, 808, 846, 849
BccI	CCATC	3 cut(s)	267, 296, 779
BceAI	ACGGC	1 cut(s)	1025
BciT130I	CCWGG	4 cut(s)	18, 122, 510, 1035
BciVI	GTATCC	1 cut(s)	1018
BcnI	CCSGG	1 cut(s)	75
BcoDI	GTCTC	1 cut(s)	517
BfaI	CTAG	7 cut(s)	102, 177, 296, 609, 638, 996, 1044
BfoI	RGCGCY	1 cut(s)	509
BfrI	CTTAAG	1 cut(s)	718
BfuAI	ACCTGC	1 cut(s)	365
BfuI	GTATCC	1 cut(s)	1018
BglII	AGATCT	4 cut(s)	10, 710, 779, 832
BisI	GCNGC	5 cut(s)	93, 167, 822, 860, 863
BlsI	GCNGC	5 cut(s)	94, 168, 823, 861, 864
BmcAI	AGTACT	1 cut(s)	88
Bme1390I	CCNGG	5 cut(s)	18, 75, 122, 510, 1035
BmeT110I	CYCGRG	1 cut(s)	904
BmgT120I	GGNCC	2 cut(s)	64, 65
BmiI	GGNNCC	2 cut(s)	66, 808
BmrFI	CCNGG	5 cut(s)	18, 75, 122, 510, 1035
BmrI	ACTGGG	2 cut(s)	62, 852
BmsI	GCATC	3 cut(s)	22, 263, 621
BmuI	ACTGGG	2 cut(s)	62, 852
BplI	GAGNNNNNCTC	2 cut(s)	514, 546
Bpu10I	CCTNAGC	1 cut(s)	645
BpuMI	CCSGG	1 cut(s)	75
BsaI	GGTCTC	1 cut(s)	517
BsaJI	CCNNGG	3 cut(s)	17, 509, 542
BsaWI	WCCGGW	1 cut(s)	615
BsaXI	ACNNNNNCTCC	2 cut(s)	930, 960
Bsc4I	CCNNNNNNNGG	6 cut(s)	61, 62, 73, 74, 213, 265
Bse1I	ACTGG	4 cut(s)	68, 207, 358, 847
Bse3DI	GCAATG	1 cut(s)	198
BseAI	TCCGGA	1 cut(s)	615
BseBI	CCWGG	4 cut(s)	18, 122, 510, 1035
BseDI	CCNNGG	3 cut(s)	17, 509, 542
BseGI	GGATG	6 cut(s)	254, 259, 447, 552, 612, 1078
BseLI	CCNNNNNNNGG	6 cut(s)	61, 62, 73, 74, 213, 265
BseMI	GCAATG	1 cut(s)	198
BseMII	CTCAG	3 cut(s)	122, 636, 943
BseNI	ACTGG	4 cut(s)	68, 207, 358, 847
BseSI	GKGCMC	2 cut(s)	68, 516
BseXI	GCAGC	5 cut(s)	79, 153, 808, 846, 849
BsgI	GTGCAG	1 cut(s)	739
BshFI	GGCC	2 cut(s)	66, 469
BsiHKAI	GWGCWC	1 cut(s)	109
BsiHKCI	CYCGRG	1 cut(s)	904
BsiSI	CCGG	2 cut(s)	74, 616
BslI	CCNNNNNNNGG	6 cut(s)	61, 62, 73, 74, 213, 265
BsmAI	GTCTC	1 cut(s)	517
BsmI	GAATGC	1 cut(s)	625
BsnI	GGCC	2 cut(s)	66, 469
Bso31I	GGTCTC	1 cut(s)	517
BsoBI	CYCGRG	1 cut(s)	904
Bsp120I	GGGCCC	1 cut(s)	64
Bsp1286I	GDGCHC	3 cut(s)	68, 109, 516
Bsp13I	TCCGGA	1 cut(s)	615
Bsp1407I	TGTACA	1 cut(s)	331
Bsp143I	GATC	6 cut(s)	10, 457, 659, 710, 779, 832
BspACI	CCGC	3 cut(s)	35, 316, 724
BspANI	GGCC	2 cut(s)	66, 469
BspCNI	CTCAG	3 cut(s)	121, 637, 942
BspEI	TCCGGA	1 cut(s)	615
BspLI	GGNNCC	2 cut(s)	66, 808
BspMI	ACCTGC	1 cut(s)	365
BspPI	GGATC	1 cut(s)	667
BspTI	CTTAAG	1 cut(s)	718
BspTNI	GGTCTC	1 cut(s)	517
BsrBI	CCGCTC	1 cut(s)	316
BsrDI	GCAATG	1 cut(s)	198
BsrGI	TGTACA	1 cut(s)	331
BsrI	ACTGG	4 cut(s)	68, 207, 358, 847
BssECI	CCNNGG	3 cut(s)	17, 509, 542
BssMI	GATC	6 cut(s)	10, 457, 659, 710, 779, 832
Bst2UI	CCWGG	4 cut(s)	18, 122, 510, 1035
Bst4CI	ACNGT	4 cut(s)	605, 653, 760, 952
BstAFI	CTTAAG	1 cut(s)	718
BstAPI	GCANNNNNTGC	1 cut(s)	992
BstAUI	TGTACA	1 cut(s)	331
BstC8I	GCNNGC	2 cut(s)	452, 584
BstDEI	CTNAG	7 cut(s)	108, 162, 370, 645, 680, 691, 929
BstDSI	CCRYGG	1 cut(s)	542
BstF5I	GGATG	6 cut(s)	254, 259, 447, 552, 612, 1078
BstH2I	RGCGCY	1 cut(s)	509
BstHHI	GCGC	2 cut(s)	508, 1128
BstKTI	GATC	6 cut(s)	13, 460, 662, 713, 782, 835
BstMAI	GTCTC	1 cut(s)	517
BstMBI	GATC	6 cut(s)	10, 457, 659, 710, 779, 832
BstMWI	GCNNNNNNNGC	3 cut(s)	387, 588, 992
BstNI	CCWGG	4 cut(s)	18, 122, 510, 1035
BstNSI	RCATGY	1 cut(s)	995
BstSCI	CCNGG	5 cut(s)	16, 73, 120, 508, 1033
BstSLI	GKGCMC	2 cut(s)	68, 516
BstV1I	GCAGC	5 cut(s)	79, 153, 808, 846, 849
BstX2I	RGATCY	4 cut(s)	10, 710, 779, 832
BstYI	RGATCY	4 cut(s)	10, 710, 779, 832
BsuI	GTATCC	1 cut(s)	1018
BsuRI	GGCC	2 cut(s)	66, 469
BtgI	CCRYGG	1 cut(s)	542
BtsCI	GGATG	6 cut(s)	254, 259, 447, 552, 612, 1078
BtsI	GCAGTG	1 cut(s)	804
BtsIMutI	CAGTG	2 cut(s)	756, 804
BveI	ACCTGC	1 cut(s)	365
Cac8I	GCNNGC	2 cut(s)	452, 584
CaiI	CAGNNNCTG	1 cut(s)	115
CfoI	GCGC	2 cut(s)	508, 1128
Cfr13I	GGNCC	2 cut(s)	64, 65
Csp6I	GTAC	5 cut(s)	49, 71, 87, 332, 357
CviAII	CATG	4 cut(s)	794, 855, 992, 1116
CviQI	GTAC	5 cut(s)	49, 71, 87, 332, 357
DdeI	CTNAG	7 cut(s)	108, 162, 370, 645, 680, 691, 929
DpnI	GATC	6 cut(s)	12, 459, 661, 712, 781, 834
DpnII	GATC	6 cut(s)	10, 457, 659, 710, 779, 832
DrdI	GACNNNNNNGTC	1 cut(s)	996
DseDI	GACNNNNNNGTC	1 cut(s)	996
EciI	GGCGGA	1 cut(s)	739
Eco24I	GRGCYC	1 cut(s)	68
Eco31I	GGTCTC	1 cut(s)	517
Eco57I	CTGAAG	1 cut(s)	155
Eco88I	CYCGRG	1 cut(s)	904
EcoO109I	RGGNCCY	1 cut(s)	64
EcoRI	GAATTC	2 cut(s)	236, 407
EcoRII	CCWGG	4 cut(s)	16, 120, 508, 1033
EcoT38I	GRGCYC	1 cut(s)	68
FaeI	CATG	4 cut(s)	797, 858, 995, 1119
FatI	CATG	4 cut(s)	793, 854, 991, 1115
FauNDI	CATATG	1 cut(s)	518
Fnu4HI	GCNGC	5 cut(s)	93, 167, 822, 860, 863
FokI	GGATG	6 cut(s)	241, 246, 454, 559, 599, 1065
FriOI	GRGCYC	1 cut(s)	68
Fsp4HI	GCNGC	5 cut(s)	93, 167, 822, 860, 863
FspBI	CTAG	7 cut(s)	102, 177, 296, 609, 638, 996, 1044
GlaI	GCGC	2 cut(s)	507, 1127
GluI	GCNGC	5 cut(s)	93, 167, 822, 860, 863
HaeII	RGCGCY	1 cut(s)	509
HaeIII	GGCC	2 cut(s)	66, 469
HapII	CCGG	2 cut(s)	74, 616
HhaI	GCGC	2 cut(s)	508, 1128
Hin1II	CATG	4 cut(s)	797, 858, 995, 1119
Hin6I	GCGC	2 cut(s)	506, 1126
HinP1I	GCGC	2 cut(s)	506, 1126
HindIII	AAGCTT	1 cut(s)	1061
HinfI	GANTC	2 cut(s)	790, 927
HpaII	CCGG	2 cut(s)	74, 616
HphI	GGTGA	3 cut(s)	311, 859, 1008
Hpy166II	GTNNAC	3 cut(s)	686, 901, 926
Hpy188I	TCNGA	4 cut(s)	111, 413, 784, 932
Hpy188III	TCNNGA	5 cut(s)	616, 836, 906, 962, 1068
Hpy8I	GTNNAC	3 cut(s)	686, 901, 926
HpyAV	CCTTC	3 cut(s)	968, 1092, 1113
HpyCH4III	ACNGT	4 cut(s)	605, 653, 760, 952
HpyCH4V	TGCA	5 cut(s)	222, 756, 797, 986, 1115
HpyF10VI	GCNNNNNNNGC	3 cut(s)	387, 588, 992
HpyF3I	CTNAG	7 cut(s)	108, 162, 370, 645, 680, 691, 929
Hsp92II	CATG	4 cut(s)	797, 858, 995, 1119
HspAI	GCGC	2 cut(s)	506, 1126
Kpn2I	TCCGGA	1 cut(s)	615
Kzo9I	GATC	6 cut(s)	10, 457, 659, 710, 779, 832
LmnI	GCTCC	4 cut(s)	313, 641, 818, 938
Lsp1109I	GCAGC	5 cut(s)	79, 153, 808, 846, 849
LweI	GCATC	3 cut(s)	22, 263, 621
MaeI	CTAG	7 cut(s)	102, 177, 296, 609, 638, 996, 1044
MaeIII	GTNAC	1 cut(s)	946
MalI	GATC	6 cut(s)	12, 459, 661, 712, 781, 834
MbiI	CCGCTC	1 cut(s)	316
MboI	GATC	6 cut(s)	10, 457, 659, 710, 779, 832
MboII	GAAGA	3 cut(s)	5, 52, 90
MfeI	CAATTG	1 cut(s)	942
MflI	RGATCY	4 cut(s)	10, 710, 779, 832
MhlI	GDGCHC	3 cut(s)	68, 109, 516
MluCI	AATT	3 cut(s)	236, 407, 942
MlyI	GAGTC	2 cut(s)	799, 921
MnlI	CCTC	5 cut(s)	210, 226, 337, 480, 640
MroI	TCCGGA	1 cut(s)	615
MseI	TTAA	5 cut(s)	350, 395, 476, 675, 719
MslI	CAYNNNNRTG	1 cut(s)	1097
MspCI	CTTAAG	1 cut(s)	718
MspI	CCGG	2 cut(s)	74, 616
MspR9I	CCNGG	5 cut(s)	18, 75, 122, 510, 1035
MunI	CAATTG	1 cut(s)	942
Mva1269I	GAATGC	1 cut(s)	625
MvaI	CCWGG	4 cut(s)	18, 122, 510, 1035
MwoI	GCNNNNNNNGC	3 cut(s)	387, 588, 992
NciI	CCSGG	1 cut(s)	75
NdeI	CATATG	1 cut(s)	518
NdeII	GATC	6 cut(s)	10, 457, 659, 710, 779, 832
NlaIII	CATG	4 cut(s)	797, 858, 995, 1119
NlaIV	GGNNCC	2 cut(s)	66, 808
NspI	RCATGY	1 cut(s)	995
PaqCI	CACCTGC	1 cut(s)	365
PctI	GAATGC	1 cut(s)	625
PflMI	CCANNNNNTGG	1 cut(s)	265
PfoI	TCCNGGA	1 cut(s)	1033
PkrI	GCNGC	5 cut(s)	94, 168, 823, 861, 864
PleI	GAGTC	2 cut(s)	798, 921
PpsI	GAGTC	2 cut(s)	798, 921
Psp6I	CCWGG	4 cut(s)	16, 120, 508, 1033
PspGI	CCWGG	4 cut(s)	16, 120, 508, 1033
PspN4I	GGNNCC	2 cut(s)	66, 808
PspOMI	GGGCCC	1 cut(s)	64
PspPI	GGNCC	2 cut(s)	64, 65
PstNI	CAGNNNCTG	1 cut(s)	115
PsuI	RGATCY	4 cut(s)	10, 710, 779, 832
RsaI	GTAC	5 cut(s)	50, 72, 88, 333, 358
RsaNI	GTAC	5 cut(s)	49, 71, 87, 332, 357
RseI	CAYNNNNRTG	1 cut(s)	1097
SaqAI	TTAA	5 cut(s)	350, 395, 476, 675, 719
SatI	GCNGC	5 cut(s)	93, 167, 822, 860, 863
Sau3AI	GATC	6 cut(s)	10, 457, 659, 710, 779, 832
Sau96I	GGNCC	2 cut(s)	64, 65
ScaI	AGTACT	1 cut(s)	88
SchI	GAGTC	2 cut(s)	799, 921
ScrFI	CCNGG	5 cut(s)	18, 75, 122, 510, 1035
SduI	GDGCHC	3 cut(s)	68, 109, 516
SfaNI	GCATC	3 cut(s)	22, 263, 621
SmiMI	CAYNNNNRTG	1 cut(s)	1097
SmlI	CTYRAG	1 cut(s)	718
SmoI	CTYRAG	1 cut(s)	718
Sse9I	AATT	3 cut(s)	236, 407, 942
SsiI	CCGC	3 cut(s)	35, 316, 724
SspMI	CTAG	7 cut(s)	102, 177, 296, 609, 638, 996, 1044
StyD4I	CCNGG	5 cut(s)	16, 73, 120, 508, 1033
TaaI	ACNGT	4 cut(s)	605, 653, 760, 952
TaqI	TCGA	1 cut(s)	554
TasI	AATT	3 cut(s)	236, 407, 942
TatI	WGTACW	2 cut(s)	86, 331
Tru1I	TTAA	5 cut(s)	350, 395, 476, 675, 719
Tru9I	TTAA	5 cut(s)	350, 395, 476, 675, 719
TscAI	CASTG	2 cut(s)	763, 804
TseI	GCWGC	5 cut(s)	92, 166, 821, 859, 862
TspDTI	ATGAA	4 cut(s)	422, 458, 750, 1095
TspGWI	ACGGA	1 cut(s)	559
TspRI	CASTG	2 cut(s)	763, 804
Van91I	CCANNNNNTGG	1 cut(s)	265
Vha464I	CTTAAG	1 cut(s)	718
XapI	RAATTY	2 cut(s)	236, 407
XceI	RCATGY	1 cut(s)	995
XcmI	CCANNNNNNNNNTGG	1 cut(s)	14
XspI	CTAG	7 cut(s)	102, 177, 296, 609, 638, 996, 1044
ZrmI	AGTACT	1 cut(s)	88

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.