Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0008571

Physical Location & Seq

Genomic Coordinates Forward (+)

8483033 .. 8487865

Gene Structure 4833 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G148600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1374 bp

ATGGGGAAGAAGAGGCAGAGAGAGAGGCATCAGAATCCAGAGCCATTTCTCGCAGAAGAGAATGGCTCTGTGGCCTCGAAGAAGCAAACCAAGTCCAAGCAGCACCAGATGGAAGAGAAGCTGATATCTTCGGGCATGAGCTCGAAGATCCTCAAGGAGGCTCTGGCTCAGCAGAGGGAGGTCGAGGACGAGGAGAACCGTGCCCAAAACCCTAACAATTCCTTATTAAACGTCACTGAAGACCCGCGCAAGGATAAAGCAGCTGAGGAAGAGGAAGACATCGATGACTTCGGTGGATTCTCTGAAACGCAGAGCCGTTTTGGCGGCTATGAAGAGAATGATGAACATGATGAGAAATTATTAAACGAGATTGATGAAGATGATGAGAATCTATTAGAGGCATTCTTGTCAAAGTCTGCGGGTCCACAACGTACTCTTGCAGACCTCATTGTCGCAAGAATTAAAGAGAAGGATTCAGATGTCAGCTCAGATGCTAGGCCTTTGCCTAAATTGGATACCTCCCTCATAGAATTGTATAAGGGAGTTGGCAAGTTTCTTAGTAAGTACACTGCTGGCAAGGTTCCCAAACCATTCAAACACATCCCTTCAGTGCCTCGATGGGAAGATGTCCTATATTTGACTGAGCCTGAGAATTGGTCACCAAATGCAATGTACCAAGCTACGAGAATTTTTGCTTCCAATTTGGGTAAGCAGAAGGTAGAACGTTTCTACAAGCTTGTGTTGCTCCCACGAGTGAGAGAAGACATTCGGAAGCATAAGCGCTTGCATTTTGCCCTATATCAATCTTTGAAAAAGTCTTTGTACAAACCTGCTGCCTTTTTCTTAGGAATACTTCTTCCGTTGTGTGAGTCAGGGACGTGTAATCTAAGAGAAGCTGTTATTTTTGGGAGCATTATAGAAAAGGTCTCCATTCCTCCACTTCATTCAAGTGTTGCATTAATGAAGCTTGCAGAGATGAAATACTGTGGCACAACGAGTTACTTTATAAAGCTTCTTTTGGATAAAAAATATGCCTTACCATATCGCGTACTCGATGCTGTTGTTGCACATTTTATGAGATTCTTGGAGGAAACAAGGCTAATGCCTGTTATATGGCACCAGTCACTTCTTACATTTGTGCAAAGGTACAAAAACGAATTACAAAAGGAGGATAAAGATAATCTTAGAAATCTTCTTGAAAAGCAAAAGCACTATTTGGTAACCCCTGAAATAAGAAGGGAACTAGATCATAGCCGCAATCGTGGAGAGAGAGAGGATGATCTTATGTCAATCGCATATCCAGTTGGTGTGATCAATAAACCTTTTGAAGAGGATTTGTCTGACATTCCAGAGGTGCCTATGGAGGATGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Bystin

Protein Analysis

458

Amino Acids

52.83

Weight (kDa)

5.9

Isoelectric Point (pI)

49.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008571)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31660
fragaria_vesca	FvH4_3g16580 FvH4_3g16580
malus_domestica	MD05G1209000.v1.1 MD10G1195400.v1.1
prunus_persica	Prupe.4G148600_v2.0.a1
pyrus_communis	pycom05g19510 pycom10g16910
rosa_chinensis	RchiOBHm_Chr5g0027651
rosa_laevigata	RLG00000033033
rosa_multiflora	Rmu_sc0001647.1_g000017 Rmu_sc0001647.1_g000027
rosa_roxburghii	Rroxscaffold_1G00051900
rosa_rugosa	Rorug01G0144400.1 Rorug05G0100300
rosa_samantha	Rh5AG194700 Rh5BG192900 Rh5CG212900 Rh5DG194800 Rh7AG352300 Rh7CG369600
rosa_wichuraiana	Rw5G017740 Rw7G030070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1007
AasI	GACNNNNNNGTC	1 cut(s)	449
Acc36I	ACCTGC	1 cut(s)	838
AccB1I	GGYRCC	2 cut(s)	1116, 1354
AccII	CGCG	2 cut(s)	247, 1047
AciI	CCGC	4 cut(s)	245, 324, 419, 1255
AclI	AACGTT	1 cut(s)	724
AclWI	GGATC	1 cut(s)	142
AcsI	RAATTY	1 cut(s)	687
AcuI	CTGAAG	2 cut(s)	258, 591
AfaI	GTAC	6 cut(s)	433, 566, 674, 824, 1050, 1148
AfeI	AGCGCT	1 cut(s)	782
AfiI	CCNNNNNNNGG	2 cut(s)	157, 250
AflIII	ACRYGT	1 cut(s)	878
AgsI	TTSAA	5 cut(s)	595, 811, 948, 1199, 1328
AjiI	CACGTC	1 cut(s)	879
AluBI	AGCT	9 cut(s)	121, 141, 263, 486, 680, 736, 896, 967, 1012
AluI	AGCT	9 cut(s)	121, 141, 263, 486, 680, 736, 896, 967, 1012
Alw21I	GWGCWC	1 cut(s)	143
Alw26I	GTCTC	1 cut(s)	931
AlwI	GGATC	1 cut(s)	142
Aor51HI	AGCGCT	1 cut(s)	782
AoxI	GGCC	2 cut(s)	72, 497
ApeKI	GCWGC	3 cut(s)	100, 260, 833
ApoI	RAATTY	1 cut(s)	687
AseI	ATTAAT	1 cut(s)	959
Asp700I	GAANNNNTTC	1 cut(s)	765
AspLEI	GCGC	2 cut(s)	249, 783
AspS9I	GGNCC	1 cut(s)	422
AsuHPI	GGTGA	1 cut(s)	651
AvaII	GGWCC	1 cut(s)	422
BaeGI	GKGCMC	1 cut(s)	205
BanI	GGYRCC	2 cut(s)	1116, 1354
BanII	GRGCYC	1 cut(s)	143
BauI	CACGAG	1 cut(s)	750
BbsI	GAAGAC	3 cut(s)	246, 282, 768
Bbv12I	GWGCWC	1 cut(s)	143
BbvCI	CCTCAGC	1 cut(s)	264
BbvI	GCAGC	3 cut(s)	112, 272, 820
BccI	CCATC	2 cut(s)	103, 612
BceAI	ACGGC	1 cut(s)	300
BciVI	GTATCC	1 cut(s)	508
BclI	TGATCA	1 cut(s)	1311
BcoDI	GTCTC	1 cut(s)	931
BfaI	CTAG	3 cut(s)	495, 1244, 1372
BfoI	RGCGCY	1 cut(s)	784
BfuAI	ACCTGC	1 cut(s)	838
BfuI	GTATCC	1 cut(s)	508
BglI	GCCNNNNNGGC	1 cut(s)	321
BisI	GCNGC	5 cut(s)	101, 261, 325, 834, 1255
BlpI	GCTNAGC	1 cut(s)	168
BlsI	GCNGC	5 cut(s)	102, 262, 326, 835, 1256
Bme18I	GGWCC	1 cut(s)	422
BmgBI	CACGTC	1 cut(s)	879
BmgT120I	GGNCC	1 cut(s)	422
BmiI	GGNNCC	4 cut(s)	423, 582, 1118, 1356
BmsI	GCATC	3 cut(s)	37, 481, 1045
BpiI	GAAGAC	3 cut(s)	246, 282, 768
BplI	GAGNNNNNCTC	2 cut(s)	50, 82
Bpu10I	CCTNAGC	1 cut(s)	264
Bpu1102I	GCTNAGC	1 cut(s)	168
BpuEI	CTTGAG	1 cut(s)	137
Bsa29I	ATCGAT	1 cut(s)	282
BsaBI	GATNNNNATC	1 cut(s)	387
BsaI	GGTCTC	1 cut(s)	931
Bsc4I	CCNNNNNNNGG	2 cut(s)	157, 250
Bse1I	ACTGG	2 cut(s)	1120, 1301
Bse3DI	GCAATG	1 cut(s)	675
Bse8I	GATNNNNATC	1 cut(s)	387
BseCI	ATCGAT	1 cut(s)	282
BseGI	GGATG	3 cut(s)	600, 1282, 1372
BseJI	GATNNNNATC	1 cut(s)	387
BseLI	CCNNNNNNNGG	2 cut(s)	157, 250
BseMI	GCAATG	1 cut(s)	675
BseMII	CTCAG	5 cut(s)	182, 255, 501, 633, 639
BseNI	ACTGG	2 cut(s)	1120, 1301
BseRI	GAGGAG	1 cut(s)	206
BseSI	GKGCMC	1 cut(s)	205
BseXI	GCAGC	3 cut(s)	112, 272, 820
Bsh1236I	CGCG	2 cut(s)	247, 1047
BshFI	GGCC	2 cut(s)	74, 499
BshNI	GGYRCC	2 cut(s)	1116, 1354
BshVI	ATCGAT	1 cut(s)	282
BsiHKAI	GWGCWC	1 cut(s)	143
BslFI	GGGAC	1 cut(s)	889
BslI	CCNNNNNNNGG	2 cut(s)	157, 250
BsmAI	GTCTC	1 cut(s)	931
BsmFI	GGGAC	1 cut(s)	889
BsmI	GAATGC	1 cut(s)	401
BsnI	GGCC	2 cut(s)	74, 499
Bso31I	GGTCTC	1 cut(s)	931
Bsp1286I	GDGCHC	2 cut(s)	143, 205
Bsp1407I	TGTACA	1 cut(s)	822
Bsp143I	GATC	4 cut(s)	147, 1246, 1279, 1311
Bsp1720I	GCTNAGC	1 cut(s)	168
BspACI	CCGC	4 cut(s)	245, 324, 419, 1255
BspANI	GGCC	2 cut(s)	74, 499
BspCNI	CTCAG	5 cut(s)	181, 256, 500, 634, 640
BspDI	ATCGAT	1 cut(s)	282
BspFNI	CGCG	2 cut(s)	247, 1047
BspLI	GGNNCC	4 cut(s)	423, 582, 1118, 1356
BspMI	ACCTGC	1 cut(s)	838
BspPI	GGATC	1 cut(s)	142
BspT107I	GGYRCC	2 cut(s)	1116, 1354
BspTNI	GGTCTC	1 cut(s)	931
BsrDI	GCAATG	1 cut(s)	675
BsrGI	TGTACA	1 cut(s)	822
BsrI	ACTGG	2 cut(s)	1120, 1301
BssMI	GATC	4 cut(s)	147, 1246, 1279, 1311
BssSI	CACGAG	1 cut(s)	750
Bst2BI	CACGAG	1 cut(s)	750
Bst4CI	ACNGT	2 cut(s)	200, 986
Bst6I	CTCTTC	6 cut(s)	5, 51, 108, 264, 327, 1323
BstAUI	TGTACA	1 cut(s)	822
BstC8I	GCNNGC	3 cut(s)	574, 785, 969
BstDEI	CTNAG	9 cut(s)	168, 264, 487, 557, 642, 648, 844, 887, 1184
BstEII	GGTNACC	2 cut(s)	657, 1219
BstENI	CCTNNNNNAGG	1 cut(s)	155
BstF5I	GGATG	3 cut(s)	600, 1282, 1372
BstFNI	CGCG	2 cut(s)	247, 1047
BstH2I	RGCGCY	1 cut(s)	784
BstHHI	GCGC	2 cut(s)	249, 783
BstKTI	GATC	4 cut(s)	150, 1249, 1282, 1314
BstMAI	GTCTC	1 cut(s)	931
BstMBI	GATC	4 cut(s)	147, 1246, 1279, 1311
BstMWI	GCNNNNNNNGC	3 cut(s)	321, 742, 1064
BstPI	GGTNACC	2 cut(s)	657, 1219
BstSLI	GKGCMC	1 cut(s)	205
BstUI	CGCG	2 cut(s)	247, 1047
BstV1I	GCAGC	3 cut(s)	112, 272, 820
BstV2I	GAAGAC	3 cut(s)	246, 282, 768
BstX2I	RGATCY	1 cut(s)	147
BstYI	RGATCY	1 cut(s)	147
Bsu15I	ATCGAT	1 cut(s)	282
BsuI	GTATCC	1 cut(s)	508
BsuRI	GGCC	2 cut(s)	74, 499
BsuTUI	ATCGAT	1 cut(s)	282
BtrI	CACGTC	1 cut(s)	879
BtsCI	GGATG	3 cut(s)	600, 1282, 1372
BtsI	GCAGTG	1 cut(s)	567
BtsIMutI	CAGTG	3 cut(s)	234, 567, 615
BveI	ACCTGC	1 cut(s)	838
Cac8I	GCNNGC	3 cut(s)	574, 785, 969
CfoI	GCGC	2 cut(s)	249, 783
Cfr13I	GGNCC	1 cut(s)	422
ClaI	ATCGAT	1 cut(s)	282
Csp6I	GTAC	6 cut(s)	432, 565, 673, 823, 1049, 1147
CviAII	CATG	2 cut(s)	136, 347
CviQI	GTAC	6 cut(s)	432, 565, 673, 823, 1049, 1147
DdeI	CTNAG	9 cut(s)	168, 264, 487, 557, 642, 648, 844, 887, 1184
DpnI	GATC	4 cut(s)	149, 1248, 1281, 1313
DpnII	GATC	4 cut(s)	147, 1246, 1279, 1311
DrdI	GACNNNNNNGTC	1 cut(s)	449
DseDI	GACNNNNNNGTC	1 cut(s)	449
Eam1104I	CTCTTC	6 cut(s)	5, 51, 108, 264, 327, 1323
EarI	CTCTTC	6 cut(s)	5, 51, 108, 264, 327, 1323
Ecl136II	GAGCTC	1 cut(s)	141
Eco147I	AGGCCT	1 cut(s)	499
Eco24I	GRGCYC	1 cut(s)	143
Eco31I	GGTCTC	1 cut(s)	931
Eco32I	GATATC	1 cut(s)	126
Eco47I	GGWCC	1 cut(s)	422
Eco47III	AGCGCT	1 cut(s)	782
Eco53kI	GAGCTC	1 cut(s)	141
Eco57I	CTGAAG	2 cut(s)	258, 591
Eco91I	GGTNACC	2 cut(s)	657, 1219
EcoICRI	GAGCTC	1 cut(s)	141
EcoNI	CCTNNNNNAGG	1 cut(s)	155
EcoO65I	GGTNACC	2 cut(s)	657, 1219
EcoRV	GATATC	1 cut(s)	126
EcoT38I	GRGCYC	1 cut(s)	143
FaeI	CATG	2 cut(s)	139, 350
FalI	AAGNNNNNCTT	2 cut(s)	1167, 1199
FaqI	GGGAC	1 cut(s)	889
FatI	CATG	2 cut(s)	135, 346
FauI	CCCGC	2 cut(s)	252, 412
FbaI	TGATCA	1 cut(s)	1311
Fnu4HI	GCNGC	5 cut(s)	101, 261, 325, 834, 1255
FokI	GGATG	2 cut(s)	587, 1289
FriOI	GRGCYC	1 cut(s)	143
Fsp4HI	GCNGC	5 cut(s)	101, 261, 325, 834, 1255
FspBI	CTAG	3 cut(s)	495, 1244, 1372
GlaI	GCGC	2 cut(s)	248, 782
GluI	GCNGC	5 cut(s)	101, 261, 325, 834, 1255
HaeII	RGCGCY	1 cut(s)	784
HaeIII	GGCC	2 cut(s)	74, 499
HhaI	GCGC	2 cut(s)	249, 783
Hin1II	CATG	2 cut(s)	139, 350
Hin6I	GCGC	2 cut(s)	247, 781
HinP1I	GCGC	2 cut(s)	247, 781
HindIII	AAGCTT	3 cut(s)	734, 965, 1010
HinfI	GANTC	6 cut(s)	34, 297, 388, 473, 869, 1080
HphI	GGTGA	1 cut(s)	651
Hpy166II	GTNNAC	2 cut(s)	425, 567
Hpy188I	TCNGA	6 cut(s)	33, 304, 478, 490, 771, 1342
Hpy188III	TCNNGA	3 cut(s)	38, 1196, 1349
Hpy8I	GTNNAC	2 cut(s)	425, 567
HpyAV	CCTTC	4 cut(s)	463, 615, 709, 1230
HpyCH4III	ACNGT	2 cut(s)	200, 986
HpyCH4IV	ACGT	4 cut(s)	231, 430, 724, 878
HpyCH4V	TGCA	7 cut(s)	440, 668, 787, 956, 971, 1067, 1141
HpyF10VI	GCNNNNNNNGC	3 cut(s)	321, 742, 1064
HpyF3I	CTNAG	9 cut(s)	168, 264, 487, 557, 642, 648, 844, 887, 1184
HpySE526I	ACGT	4 cut(s)	231, 430, 724, 878
Hsp92II	CATG	2 cut(s)	139, 350
HspAI	GCGC	2 cut(s)	247, 781
Ksp22I	TGATCA	1 cut(s)	1311
Kzo9I	GATC	4 cut(s)	147, 1246, 1279, 1311
LmnI	GCTCC	2 cut(s)	750, 909
Lsp1109I	GCAGC	3 cut(s)	112, 272, 820
LweI	GCATC	3 cut(s)	37, 481, 1045
MaeI	CTAG	3 cut(s)	495, 1244, 1372
MaeII	ACGT	4 cut(s)	231, 430, 724, 878
MaeIII	GTNAC	5 cut(s)	232, 657, 998, 1122, 1219
MalI	GATC	4 cut(s)	149, 1248, 1281, 1313
MboI	GATC	4 cut(s)	147, 1246, 1279, 1311
MflI	RGATCY	1 cut(s)	147
MhlI	GDGCHC	2 cut(s)	143, 205
MluCI	AATT	9 cut(s)	217, 356, 459, 509, 530, 652, 687, 700, 1157
MlyI	GAGTC	1 cut(s)	878
MroXI	GAANNNNTTC	1 cut(s)	765
MseI	TTAA	4 cut(s)	227, 362, 462, 959
MslI	CAYNNNNRTG	1 cut(s)	948
MspA1I	CMGCKG	1 cut(s)	263
Mva1269I	GAATGC	1 cut(s)	401
MvnI	CGCG	2 cut(s)	247, 1047
MwoI	GCNNNNNNNGC	3 cut(s)	321, 742, 1064
NdeII	GATC	4 cut(s)	147, 1246, 1279, 1311
NlaIII	CATG	2 cut(s)	139, 350
NlaIV	GGNNCC	4 cut(s)	423, 582, 1118, 1356
NmuCI	GTSAC	3 cut(s)	232, 657, 1122
PceI	AGGCCT	1 cut(s)	499
PctI	GAATGC	1 cut(s)	401
PdmI	GAANNNNTTC	1 cut(s)	765
PfeI	GAWTC	5 cut(s)	34, 297, 388, 473, 1080
PkrI	GCNGC	5 cut(s)	102, 262, 326, 835, 1256
PleI	GAGTC	1 cut(s)	877
PpsI	GAGTC	1 cut(s)	877
PshBI	ATTAAT	1 cut(s)	959
PsiI	TTATAA	1 cut(s)	1007
Psp124BI	GAGCTC	1 cut(s)	143
Psp1406I	AACGTT	1 cut(s)	724
PspEI	GGTNACC	2 cut(s)	657, 1219
PspN4I	GGNNCC	4 cut(s)	423, 582, 1118, 1356
PspPI	GGNCC	1 cut(s)	422
PsuI	RGATCY	1 cut(s)	147
PvuII	CAGCTG	1 cut(s)	263
RsaI	GTAC	6 cut(s)	433, 566, 674, 824, 1050, 1148
RsaNI	GTAC	6 cut(s)	432, 565, 673, 823, 1049, 1147
RseI	CAYNNNNRTG	1 cut(s)	948
SacI	GAGCTC	1 cut(s)	143
SaqAI	TTAA	4 cut(s)	227, 362, 462, 959
SatI	GCNGC	5 cut(s)	101, 261, 325, 834, 1255
Sau3AI	GATC	4 cut(s)	147, 1246, 1279, 1311
Sau96I	GGNCC	1 cut(s)	422
SchI	GAGTC	1 cut(s)	878
SduI	GDGCHC	2 cut(s)	143, 205
SfaNI	GCATC	3 cut(s)	37, 481, 1045
SinI	GGWCC	1 cut(s)	422
SmiMI	CAYNNNNRTG	1 cut(s)	948
SmlI	CTYRAG	1 cut(s)	152
SmoI	CTYRAG	1 cut(s)	152
Sse9I	AATT	9 cut(s)	217, 356, 459, 509, 530, 652, 687, 700, 1157
SseBI	AGGCCT	1 cut(s)	499
SsiI	CCGC	4 cut(s)	245, 324, 419, 1255
SspMI	CTAG	3 cut(s)	495, 1244, 1372
SstI	GAGCTC	1 cut(s)	143
StuI	AGGCCT	1 cut(s)	499
TaaI	ACNGT	2 cut(s)	200, 986
TaiI	ACGT	4 cut(s)	234, 433, 727, 881
TaqI	TCGA	6 cut(s)	77, 143, 183, 282, 616, 1053
TasI	AATT	9 cut(s)	217, 356, 459, 509, 530, 652, 687, 700, 1157
TatI	WGTACW	2 cut(s)	564, 822
TauI	GCSGC	2 cut(s)	327, 1257
TfiI	GAWTC	5 cut(s)	34, 297, 388, 473, 1080
Tru1I	TTAA	4 cut(s)	227, 362, 462, 959
Tru9I	TTAA	4 cut(s)	227, 362, 462, 959
TscAI	CASTG	3 cut(s)	241, 574, 615
TseFI	GTSAC	3 cut(s)	232, 657, 1122
TseI	GCWGC	3 cut(s)	100, 260, 833
Tsp45I	GTSAC	3 cut(s)	232, 657, 1122
TspDTI	ATGAA	6 cut(s)	345, 357, 390, 932, 977, 992
TspGWI	ACGGA	1 cut(s)	849
TspRI	CASTG	3 cut(s)	241, 574, 615
VpaK11BI	GGWCC	1 cut(s)	422
VspI	ATTAAT	1 cut(s)	959
XagI	CCTNNNNNAGG	1 cut(s)	155
XapI	RAATTY	1 cut(s)	687
XmnI	GAANNNNTTC	1 cut(s)	765
XspI	CTAG	3 cut(s)	495, 1244, 1372

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.