Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001647.1

Orthogroup ID

OG0008571

Physical Location & Seq

Genomic Coordinates Forward (+)

67059 .. 70504

Gene Structure 3446 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001647.1_g000017.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1377 bp

atgccgaagaagagagggagagagaggcatcacaacccggagccatttctgggcgacgacgatggcgcctctgtggcctccaagaagcggaccaagtccaagcagcaccagaccgacgagactctgatttcgtcgggcatgagcgccaagattctcaagcaggctcagcttcagcagagggaggtcgaggacgacgagaatcgaacccaaaaccccaacgccttatcggacatcaccgaagagccgcacggggttgaatctgatgacgacgaccccgatgagttcggtgggtttcttgacaatcgcggcgaggatgaagcgtttaaagtgacgaacaggatgacgaaggagattgggaaggagtatgagaaagtattagggaaggcggcggtggaagaggatgagaaattactggatgcatttctttcgaaggatgcagggcggcagcttactcttgcagacctgattgttgcgaggattaaagagaatgattctaatatcactccatcaaatgccaattcagatatgaggcctttgcctaaattggatgcagacaccatagaaatcttcaaggggtatgaggagaatgattctaatatcactccatcaaatgccaattcagatatgaggcctttgcctaaattggatgcagacaccatagaaatcttcaagggggttggccagtttcttaaaaagtacacggctggaaaggttcccaaaccctttaaacacatcccttcaatgaatcaatgggaagatgtcctgtatttaactgagcctgagaattggtctcccaatgcgatgtatcaagctacaagaattttcgcttccaatttgactgcgaagaaggtagaacgtttctacaagcttgtcttgcttccacgtgtgagagaagacattcggaagaacaagcgcttgcattttgccctttatcaggctttgaaaaagtctctttacaagcctgctgcctttttcaaaggaatattgctacctttgtgcgagtgttgcagtaatgaagctagcagacatggaatactgtgttattttataaagcttcttttggagaaaaagtatgctttgccatatcgtgtaattgatgctcttgttggacattttatgagatttatgaatgaaacaagggtaatgccagtgatatggcaccaatcacttcttgcatttgtggaaaggtacaaaaatgatatactgaatgaggataaagataatcttagagttcttcttcaaactcaaaagcacgatctggtaactcgtgaaataagaaaggagctagataatagccgcagtcgtgattctgtgatgattaagcctgttgaagaagatatgtttgatattccagaggtgcctatggaggatgactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Bystin

Protein Analysis

458

Amino Acids

52.71

Weight (kDa)

5.75

Isoelectric Point (pI)

41.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008571)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31660
fragaria_vesca	FvH4_3g16580 FvH4_3g16580
malus_domestica	MD05G1209000.v1.1 MD10G1195400.v1.1
prunus_persica	Prupe.4G148600_v2.0.a1
pyrus_communis	pycom05g19510 pycom10g16910
rosa_chinensis	RchiOBHm_Chr5g0027651
rosa_laevigata	RLG00000033033
rosa_multiflora	Rmu_sc0001647.1_g000017 Rmu_sc0001647.1_g000027
rosa_roxburghii	Rroxscaffold_1G00051900
rosa_rugosa	Rorug01G0144400.1 Rorug05G0100300
rosa_samantha	Rh5AG194700 Rh5BG192900 Rh5CG212900 Rh5DG194800 Rh7AG352300 Rh7CG369600
rosa_wichuraiana	Rw5G017740 Rw7G030070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1049
AccB1I	GGYRCC	3 cut(s)	65, 1158, 1357
AccII	CGCG	1 cut(s)	306
AciI	CCGC	7 cut(s)	88, 245, 306, 386, 389, 442, 1297
AclI	AACGTT	1 cut(s)	856
AcoI	YGGCCR	1 cut(s)	679
AcsI	RAATTY	1 cut(s)	819
AcuI	CTGAAG	1 cut(s)	155
AcvI	CACGTG	1 cut(s)	884
AcyI	GRCGYC	1 cut(s)	66
AfaI	GTAC	2 cut(s)	698, 1190
AfeI	AGCGCT	1 cut(s)	914
AfiI	CCNNNNNNNGG	3 cut(s)	50, 87, 934
AflIII	ACRYGT	1 cut(s)	883
AgsI	TTSAA	8 cut(s)	257, 571, 670, 741, 943, 976, 1241, 1331
AluBI	AGCT	7 cut(s)	169, 448, 812, 868, 1019, 1054, 1285
AluI	AGCT	7 cut(s)	169, 448, 812, 868, 1019, 1054, 1285
Alw26I	GTCTC	3 cut(s)	113, 795, 954
Aor51HI	AGCGCT	1 cut(s)	914
AoxI	GGCC	4 cut(s)	75, 530, 629, 679
ApeKI	GCWGC	3 cut(s)	103, 445, 965
ApoI	RAATTY	1 cut(s)	819
ArsI	GACNNNNNNTTYG	2 cut(s)	112, 144
Asp700I	GAANNNNTTC	1 cut(s)	897
AspLEI	GCGC	3 cut(s)	68, 146, 915
AspS9I	GGNCC	1 cut(s)	90
AsuC2I	CCSGG	1 cut(s)	38
AsuHPI	GGTGA	1 cut(s)	226
AsuII	TTCGAA	1 cut(s)	428
AsuNHI	GCTAGC	1 cut(s)	1019
AvaII	GGWCC	1 cut(s)	90
BalI	TGGCCA	1 cut(s)	681
BanI	GGYRCC	3 cut(s)	65, 1158, 1357
BauI	CACGAG	1 cut(s)	1266
BbrPI	CACGTG	1 cut(s)	884
BbsI	GAAGAC	1 cut(s)	900
BbvI	GCAGC	3 cut(s)	115, 457, 952
BccI	CCATC	3 cut(s)	56, 514, 613
BceAI	ACGGC	1 cut(s)	717
BcgI	CGANNNNNNTGC	2 cut(s)	408, 442
BcnI	CCSGG	1 cut(s)	38
BcoDI	GTCTC	3 cut(s)	113, 795, 954
BfaI	CTAG	2 cut(s)	1020, 1286
BfoI	RGCGCY	3 cut(s)	69, 147, 916
BglI	GCCNNNNNGGC	1 cut(s)	74
BisI	GCNGC	8 cut(s)	104, 245, 307, 387, 443, 446, 966, 1297
BlpI	GCTNAGC	1 cut(s)	165
BlsI	GCNGC	8 cut(s)	105, 246, 308, 388, 444, 447, 967, 1298
Bme1390I	CCNGG	1 cut(s)	38
Bme18I	GGWCC	1 cut(s)	90
BmgT120I	GGNCC	1 cut(s)	90
BmiI	GGNNCC	5 cut(s)	42, 67, 714, 1160, 1359
BmrFI	CCNGG	1 cut(s)	38
BmsI	GCATC	6 cut(s)	37, 406, 424, 538, 637, 1087
BmtI	GCTAGC	1 cut(s)	1023
BpiI	GAAGAC	1 cut(s)	900
Bpu1102I	GCTNAGC	1 cut(s)	165
Bpu14I	TTCGAA	1 cut(s)	428
BpuEI	CTTGAG	1 cut(s)	140
BpuMI	CCSGG	1 cut(s)	38
BsaAI	YACGTR	1 cut(s)	884
BsaHI	GRCGYC	1 cut(s)	66
BsaI	GGTCTC	1 cut(s)	795
BsaXI	ACNNNNNCTCC	2 cut(s)	1055, 1085
Bsc4I	CCNNNNNNNGG	3 cut(s)	50, 87, 934
Bse1I	ACTGG	3 cut(s)	417, 682, 1148
BseGI	GGATG	9 cut(s)	319, 345, 406, 421, 439, 553, 652, 732, 1375
BseLI	CCNNNNNNNGG	3 cut(s)	50, 87, 934
BseMII	CTCAG	3 cut(s)	179, 765, 771
BseNI	ACTGG	3 cut(s)	417, 682, 1148
BseRI	GAGGAG	1 cut(s)	596
BseXI	GCAGC	3 cut(s)	115, 457, 952
Bsh1236I	CGCG	1 cut(s)	306
BshFI	GGCC	4 cut(s)	77, 532, 631, 681
BshNI	GGYRCC	3 cut(s)	65, 1158, 1357
BsiSI	CCGG	1 cut(s)	38
BslI	CCNNNNNNNGG	3 cut(s)	50, 87, 934
BsmAI	GTCTC	3 cut(s)	113, 795, 954
BsnI	GGCC	4 cut(s)	77, 532, 631, 681
Bso31I	GGTCTC	1 cut(s)	795
Bsp119I	TTCGAA	1 cut(s)	428
Bsp143I	GATC	1 cut(s)	1255
Bsp1720I	GCTNAGC	1 cut(s)	165
BspACI	CCGC	7 cut(s)	88, 245, 306, 386, 389, 442, 1297
BspANI	GGCC	4 cut(s)	77, 532, 631, 681
BspCNI	CTCAG	3 cut(s)	178, 766, 772
BspFNI	CGCG	1 cut(s)	306
BspLI	GGNNCC	5 cut(s)	42, 67, 714, 1160, 1359
BspOI	GCTAGC	1 cut(s)	1023
BspQI	GCTCTTC	1 cut(s)	234
BspT104I	TTCGAA	1 cut(s)	428
BspT107I	GGYRCC	3 cut(s)	65, 1158, 1357
BspTNI	GGTCTC	1 cut(s)	795
BsrI	ACTGG	3 cut(s)	417, 682, 1148
BssMI	GATC	1 cut(s)	1255
BssNI	GRCGYC	1 cut(s)	66
BssSI	CACGAG	1 cut(s)	1266
Bst2BI	CACGAG	1 cut(s)	1266
Bst4CI	ACNGT	1 cut(s)	1038
Bst6I	CTCTTC	3 cut(s)	5, 234, 390
BstACI	GRCGYC	1 cut(s)	66
BstBAI	YACGTR	1 cut(s)	884
BstBI	TTCGAA	1 cut(s)	428
BstC8I	GCNNGC	4 cut(s)	162, 917, 963, 1021
BstDEI	CTNAG	4 cut(s)	165, 774, 780, 1226
BstENI	CCTNNNNNAGG	1 cut(s)	932
BstF5I	GGATG	9 cut(s)	319, 345, 406, 421, 439, 553, 652, 732, 1375
BstFNI	CGCG	1 cut(s)	306
BstH2I	RGCGCY	3 cut(s)	69, 147, 916
BstHHI	GCGC	3 cut(s)	68, 146, 915
BstKTI	GATC	1 cut(s)	1258
BstMAI	GTCTC	3 cut(s)	113, 795, 954
BstMBI	GATC	1 cut(s)	1255
BstMWI	GCNNNNNNNGC	4 cut(s)	74, 166, 874, 1005
BstSCI	CCNGG	1 cut(s)	36
BstUI	CGCG	1 cut(s)	306
BstV1I	GCAGC	3 cut(s)	115, 457, 952
BstV2I	GAAGAC	1 cut(s)	900
BstXI	CCANNNNNNTGG	1 cut(s)	1155
BsuRI	GGCC	4 cut(s)	77, 532, 631, 681
BtgZI	GCGATG	1 cut(s)	815
BtsCI	GGATG	9 cut(s)	319, 345, 406, 421, 439, 553, 652, 732, 1375
BtsIMutI	CAGTG	1 cut(s)	1155
Cac8I	GCNNGC	4 cut(s)	162, 917, 963, 1021
CfoI	GCGC	3 cut(s)	68, 146, 915
Cfr13I	GGNCC	1 cut(s)	90
Csp6I	GTAC	2 cut(s)	697, 1189
CviAII	CATG	2 cut(s)	139, 1028
CviQI	GTAC	2 cut(s)	697, 1189
DdeI	CTNAG	4 cut(s)	165, 774, 780, 1226
DinI	GGCGCC	1 cut(s)	67
DpnI	GATC	1 cut(s)	1257
DpnII	GATC	1 cut(s)	1255
DraI	TTTAAA	2 cut(s)	325, 727
EaeI	YGGCCR	1 cut(s)	679
Eam1104I	CTCTTC	3 cut(s)	5, 234, 390
EarI	CTCTTC	3 cut(s)	5, 234, 390
Eco147I	AGGCCT	2 cut(s)	532, 631
Eco31I	GGTCTC	1 cut(s)	795
Eco47I	GGWCC	1 cut(s)	90
Eco47III	AGCGCT	1 cut(s)	914
Eco57I	CTGAAG	1 cut(s)	155
Eco72I	CACGTG	1 cut(s)	884
EcoNI	CCTNNNNNAGG	1 cut(s)	932
EcoT22I	ATGCAT	1 cut(s)	421
EgeI	GGCGCC	1 cut(s)	67
EheI	GGCGCC	1 cut(s)	67
FaeI	CATG	2 cut(s)	142, 1031
FalI	AAGNNNNNCTT	4 cut(s)	857, 889, 1209, 1241
FatI	CATG	2 cut(s)	138, 1027
Fnu4HI	GCNGC	8 cut(s)	104, 245, 307, 387, 443, 446, 966, 1297
FokI	GGATG	8 cut(s)	326, 352, 413, 428, 446, 560, 659, 719
Fsp4HI	GCNGC	8 cut(s)	104, 245, 307, 387, 443, 446, 966, 1297
FspBI	CTAG	2 cut(s)	1020, 1286
GlaI	GCGC	3 cut(s)	67, 145, 914
GluI	GCNGC	8 cut(s)	104, 245, 307, 387, 443, 446, 966, 1297
HaeII	RGCGCY	3 cut(s)	69, 147, 916
HaeIII	GGCC	4 cut(s)	77, 532, 631, 681
HapII	CCGG	1 cut(s)	38
HhaI	GCGC	3 cut(s)	68, 146, 915
Hin1I	GRCGYC	1 cut(s)	66
Hin1II	CATG	2 cut(s)	142, 1031
Hin6I	GCGC	3 cut(s)	66, 144, 913
HinP1I	GCGC	3 cut(s)	66, 144, 913
HindIII	AAGCTT	2 cut(s)	866, 1052
HinfI	GANTC	8 cut(s)	121, 151, 199, 257, 491, 590, 745, 1307
HpaII	CCGG	1 cut(s)	38
HphI	GGTGA	1 cut(s)	226
Hpy166II	GTNNAC	1 cut(s)	699
Hpy188I	TCNGA	6 cut(s)	126, 229, 262, 523, 622, 903
Hpy188III	TCNNGA	4 cut(s)	296, 1268, 1304, 1352
Hpy8I	GTNNAC	1 cut(s)	699
Hpy99I	CGWCG	6 cut(s)	59, 62, 119, 136, 197, 272
HpyAV	CCTTC	6 cut(s)	340, 352, 376, 424, 747, 841
HpyCH4III	ACNGT	1 cut(s)	1038
HpyCH4IV	ACGT	2 cut(s)	856, 883
HpyCH4V	TGCA	8 cut(s)	419, 437, 458, 551, 650, 919, 1008, 1175
HpyF10VI	GCNNNNNNNGC	4 cut(s)	74, 166, 874, 1005
HpyF3I	CTNAG	4 cut(s)	165, 774, 780, 1226
HpySE526I	ACGT	2 cut(s)	856, 883
Hsp92I	GRCGYC	1 cut(s)	66
Hsp92II	CATG	2 cut(s)	142, 1031
HspAI	GCGC	3 cut(s)	66, 144, 913
KasI	GGCGCC	1 cut(s)	65
Kzo9I	GATC	1 cut(s)	1255
LguI	GCTCTTC	1 cut(s)	234
LmnI	GCTCC	2 cut(s)	40, 1282
Lsp1109I	GCAGC	3 cut(s)	115, 457, 952
LweI	GCATC	6 cut(s)	37, 406, 424, 538, 637, 1087
MaeI	CTAG	2 cut(s)	1020, 1286
MaeII	ACGT	2 cut(s)	856, 883
MaeIII	GTNAC	2 cut(s)	328, 1261
MalI	GATC	1 cut(s)	1257
MboI	GATC	1 cut(s)	1255
MlsI	TGGCCA	1 cut(s)	681
MluCI	AATT	9 cut(s)	407, 517, 542, 616, 641, 784, 819, 832, 1092
MluNI	TGGCCA	1 cut(s)	681
Mly113I	GGCGCC	1 cut(s)	66
MlyI	GAGTC	1 cut(s)	115
MmeI	TCCRAC	1 cut(s)	1087
Mox20I	TGGCCA	1 cut(s)	681
Mph1103I	ATGCAT	1 cut(s)	421
MroXI	GAANNNNTTC	1 cut(s)	897
MscI	TGGCCA	1 cut(s)	681
MseI	TTAA	6 cut(s)	324, 480, 690, 726, 770, 1320
Msp20I	TGGCCA	1 cut(s)	681
MspI	CCGG	1 cut(s)	38
MspR9I	CCNGG	1 cut(s)	38
MvnI	CGCG	1 cut(s)	306
MwoI	GCNNNNNNNGC	4 cut(s)	74, 166, 874, 1005
NarI	GGCGCC	1 cut(s)	66
NciI	CCSGG	1 cut(s)	38
NdeII	GATC	1 cut(s)	1255
NheI	GCTAGC	1 cut(s)	1019
NlaIII	CATG	2 cut(s)	142, 1031
NlaIV	GGNNCC	5 cut(s)	42, 67, 714, 1160, 1359
NmuCI	GTSAC	1 cut(s)	328
NsiI	ATGCAT	1 cut(s)	421
NspV	TTCGAA	1 cut(s)	428
PceI	AGGCCT	2 cut(s)	532, 631
PciSI	GCTCTTC	1 cut(s)	234
PcsI	WCGNNNNNNNCGW	2 cut(s)	192, 273
PdmI	GAANNNNTTC	1 cut(s)	897
PfeI	GAWTC	7 cut(s)	151, 199, 257, 491, 590, 745, 1307
PflFI	GACNNNGTC	1 cut(s)	94
PkrI	GCNGC	8 cut(s)	105, 246, 308, 388, 444, 447, 967, 1298
PleI	GAGTC	1 cut(s)	115
PluTI	GGCGCC	1 cut(s)	69
PmaCI	CACGTG	1 cut(s)	884
PmlI	CACGTG	1 cut(s)	884
PpsI	GAGTC	1 cut(s)	115
Ppu21I	YACGTR	1 cut(s)	884
PsiI	TTATAA	1 cut(s)	1049
Psp1406I	AACGTT	1 cut(s)	856
PspCI	CACGTG	1 cut(s)	884
PspN4I	GGNNCC	5 cut(s)	42, 67, 714, 1160, 1359
PspPI	GGNCC	1 cut(s)	90
PsyI	GACNNNGTC	1 cut(s)	94
RsaI	GTAC	2 cut(s)	698, 1190
RsaNI	GTAC	2 cut(s)	697, 1189
SapI	GCTCTTC	1 cut(s)	234
SaqAI	TTAA	6 cut(s)	324, 480, 690, 726, 770, 1320
SatI	GCNGC	8 cut(s)	104, 245, 307, 387, 443, 446, 966, 1297
Sau3AI	GATC	1 cut(s)	1255
Sau96I	GGNCC	1 cut(s)	90
SchI	GAGTC	1 cut(s)	115
ScrFI	CCNGG	1 cut(s)	38
SfaNI	GCATC	6 cut(s)	37, 406, 424, 538, 637, 1087
SfoI	GGCGCC	1 cut(s)	67
SfuI	TTCGAA	1 cut(s)	428
SinI	GGWCC	1 cut(s)	90
SmlI	CTYRAG	1 cut(s)	155
SmoI	CTYRAG	1 cut(s)	155
Sse9I	AATT	9 cut(s)	407, 517, 542, 616, 641, 784, 819, 832, 1092
SseBI	AGGCCT	2 cut(s)	532, 631
SsiI	CCGC	7 cut(s)	88, 245, 306, 386, 389, 442, 1297
SspDI	GGCGCC	1 cut(s)	65
SspI	AATATT	1 cut(s)	984
SspMI	CTAG	2 cut(s)	1020, 1286
StuI	AGGCCT	2 cut(s)	532, 631
StyD4I	CCNGG	1 cut(s)	36
TaaI	ACNGT	1 cut(s)	1038
TaiI	ACGT	2 cut(s)	859, 886
TaqI	TCGA	3 cut(s)	186, 202, 428
TaqII	GACCGA	1 cut(s)	128
TasI	AATT	9 cut(s)	407, 517, 542, 616, 641, 784, 819, 832, 1092
TatI	WGTACW	1 cut(s)	696
TauI	GCSGC	5 cut(s)	247, 309, 389, 445, 1299
TfiI	GAWTC	7 cut(s)	151, 199, 257, 491, 590, 745, 1307
Tru1I	TTAA	6 cut(s)	324, 480, 690, 726, 770, 1320
Tru9I	TTAA	6 cut(s)	324, 480, 690, 726, 770, 1320
TscAI	CASTG	1 cut(s)	1155
TseFI	GTSAC	1 cut(s)	328
TseI	GCWGC	3 cut(s)	103, 445, 965
Tsp45I	GTSAC	1 cut(s)	328
TspDTI	ATGAA	5 cut(s)	330, 758, 1029, 1142, 1146
TspRI	CASTG	1 cut(s)	1155
Tth111I	GACNNNGTC	1 cut(s)	94
VpaK11BI	GGWCC	1 cut(s)	90
XagI	CCTNNNNNAGG	1 cut(s)	932
XapI	RAATTY	1 cut(s)	819
XmnI	GAANNNNTTC	1 cut(s)	897
XspI	CTAG	2 cut(s)	1020, 1286
Zsp2I	ATGCAT	1 cut(s)	421

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.