Prupe.4G170700_v2.0.a1

Glycosyl transferases group 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0014525
Physical Location & Seq
Forward (+)
10074944 .. 10076392
1449 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G170700.1

Sequence Viewer

Length: 1449 bp
ATGGGGTTGAAGCACCAAACTCCCAAAAGCTCTTCTTCCAACTTCTTCTCTTGTAGATATTCAACCATTTTCACCTTACTTCTACTCTTTACATCCTTTTTCCTCTTCCTTGCATCACTTAGGAACCTTCAGGAACCATTCTTCTGGGCTGATTATACCCAATTCAATGGTGATCTTAGAGATGCTAAATTCCCATGGAACAAACTTTGTTTCGGACCAACTTTCGAAAAGCTCAAGATTGCTGTCTTCTCCAAGACATGGCCTGTTGGTGCAGCCCCAGGTGGCATGGAGCGCCATGCTTCCACTTTGTACCATGCACTTGCTTCTAGGGGCCATGAGATTCATGTCTTCACTGTGCCTTCAGATAGGAGGCCTCGCTGGGACATACATGAAGGTAACCTTCATGTCTACTTTGCAGCAAATGATCATGGCTCAGTCAACATCTCTTTAGCATTTGATGTTTTCAATAAAGTGAATGAAAATGGGGCATTTGATTATGTGCACACTGAGAGTGTTTCGTTGCCTCATTGGCGTGCGAAAATGGTGCCTAATGTGGCTGTCACTTGGCACGGGATATGGTATGAAATTATGCACTCCAAGTTACTGCAAGAGCTTCTTTCAAATCCAAAAGGGCAGCTATCAGAGCCTATGACAGAGCTTCATGAAGCAATGCCAAGGCTTGTCGAGGAAATTCGTTTCTTTAAAAGCTACACTCAACACATATGCATAAGCAGTAGTGCTGGTGAGGTTCTAGTTAACATCTATCAACTTCCCCAAAGAAATGTCCATGTCATACTCAATGGGGTTGATGAAACAGAATTTACCCCGGATCAAGAAGCAGGTGCAAGGTTCCGAGAAAAATATGGGGTGCCTGCCAATGTGAGCATTGTGATGGGAGTTGCAGGGCGGTTGGTCAGGGACAAAGGGCATCCACTTCTCTACGAAGCCTTTTCTTCAATTGTCAGACGCCACCCCGGTGTGTTTTTGCTTGTAGCAGGCTCAGGTCCTTGGAGAAGAAGGTATGCTGAATTAGGCCCCAATGTGAAGGTTCTAGGAGCATTGGAGCCATTGGAGCTGTCTAAATTTTACAATGCACTTGATGTGTTTGTGAACCCAACATTGAGGCCCCAAGGGCTTGATCTTACATTGATTGAAGCAATGCAAAGTGGGAAGGCAGTTCTAACCCCAAACTATCCAAGCATAGTTGGGACAGTGGTTGTGGATGAAGAATTTGGATACACATTTTCACCCAATGTCAAGTCTTTTGTAGAGGCCTTAGAGTCAGCAATTAGAGATGGGCCTAATGTGCTGAAGAGGAAAGGCCTGGCTTGCAAGAAATATGTGGTTTCAATGTTCACTGCAACTAAAATGGCATCTGCTTACGAGCGTTTCTTTCTCTGCATGAAGAACACAAAATATTGCCAGTACCCTCTTCCCACAGACTGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glyco_trans_1_4 Glyco_transf_4 Glycos_transf_1

Protein Analysis

483

Amino Acids

54.49

Weight (kDa)

8.66

Isoelectric Point (pI)

41.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014525)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G73160
fragaria_vesca FvH4_3g18700
malus_domestica MD11G1259200.v1.1
prunus_persica Prupe.4G170700_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0031511
rosa_laevigata RLG00000033317 RLG00000033318
rosa_multiflora Rmu_sc0006344.1_g000008 Rmu_sc0009888.1_g000003
rosa_roxburghii Rroxscaffold_1G00048810
rosa_rugosa Rorug05G0126700
rosa_samantha Rh5AG219400 Rh5AG219500 Rh5BG218800 Rh5CG242400 Rh5DG224300
rosa_wichuraiana Rw5G020010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 830
Acc36I ACCTGC 1 cut(s) 830
AccB1I GGYRCC 2 cut(s) 544, 868
AccB7I CCANNNNNTGG 1 cut(s) 258
AccI GTMKAC 1 cut(s) 408
AciI CCGC 1 cut(s) 907
AclWI GGATC 1 cut(s) 837
AcsI RAATTY 5 cut(s) 188, 690, 818, 1082, 1229
AcuI CTGAAG 3 cut(s) 113, 345, 1331
AcyI GRCGYC 1 cut(s) 967
AfaI GTAC 2 cut(s) 311, 1427
AfiI CCNNNNNNNGG 1 cut(s) 258
AgsI TTSAA 8 cut(s) 10, 63, 166, 466, 621, 957, 1154, 1350
AjnI CCWGG 2 cut(s) 277, 1323
AleI CACNNNNGTG 1 cut(s) 975
AluBI AGCT 7 cut(s) 30, 232, 613, 637, 658, 708, 1075
AluI AGCT 7 cut(s) 30, 232, 613, 637, 658, 708, 1075
Alw21I GWGCWC 1 cut(s) 504
Alw44I GTGCAC 1 cut(s) 500
AlwI GGATC 1 cut(s) 837
AoxI GGCC 8 cut(s) 260, 331, 371, 1033, 1124, 1272, 1298, 1321
ApaLI GTGCAC 1 cut(s) 500
ApeKI GCWGC 3 cut(s) 272, 416, 634
ApoI RAATTY 5 cut(s) 188, 690, 818, 1082, 1229
AspLEI GCGC 1 cut(s) 294
AspS9I GGNCC 6 cut(s) 215, 331, 1004, 1034, 1125, 1298
AsuC2I CCSGG 2 cut(s) 827, 975
AsuHPI GGTGA 4 cut(s) 64, 182, 755, 1239
AsuII TTCGAA 1 cut(s) 225
AvaII GGWCC 2 cut(s) 215, 1004
BaeGI GKGCMC 1 cut(s) 504
BanI GGYRCC 2 cut(s) 544, 868
BbsI GAAGAC 2 cut(s) 238, 340
Bbv12I GWGCWC 1 cut(s) 504
BbvI GCAGC 3 cut(s) 284, 428, 646
BccI CCATC 2 cut(s) 886, 1289
BcgI CGANNNNNNTGC 2 cut(s) 526, 560
BciT130I CCWGG 2 cut(s) 279, 1325
BciVI GTATCC 1 cut(s) 1229
BclI TGATCA 1 cut(s) 424
BcnI CCSGG 2 cut(s) 827, 975
BfaI CTAG 3 cut(s) 327, 752, 1052
BfoI RGCGCY 1 cut(s) 295
BfuAI ACCTGC 1 cut(s) 830
BfuI GTATCC 1 cut(s) 1229
BglI GCCNNNNNGGC 2 cut(s) 529, 1132
BisI GCNGC 3 cut(s) 273, 417, 635
BlsI GCNGC 3 cut(s) 274, 418, 636
Bme1390I CCNGG 4 cut(s) 279, 827, 975, 1325
Bme18I GGWCC 2 cut(s) 215, 1004
BmgT120I GGNCC 6 cut(s) 215, 331, 1004, 1034, 1125, 1298
BmiI GGNNCC 9 cut(s) 125, 135, 332, 546, 851, 870, 1036, 1065, 1127
BmrFI CCNGG 4 cut(s) 279, 827, 975, 1325
BmsI GCATC 4 cut(s) 122, 172, 937, 1382
BpiI GAAGAC 2 cut(s) 238, 340
Bpu10I CCTNAGC 1 cut(s) 1000
Bpu14I TTCGAA 1 cut(s) 225
BpuEI CTTGAG 1 cut(s) 218
BpuMI CCSGG 2 cut(s) 827, 975
BsaHI GRCGYC 1 cut(s) 967
BsaJI CCNNGG 7 cut(s) 194, 277, 674, 825, 973, 1007, 1129
Bsc4I CCNNNNNNNGG 1 cut(s) 258
Bse1I ACTGG 1 cut(s) 1423
Bse3DI GCAATG 2 cut(s) 675, 1164
BseBI CCWGG 2 cut(s) 279, 1325
BseDI CCNNGG 7 cut(s) 194, 277, 674, 825, 973, 1007, 1129
BseGI GGATG 3 cut(s) 92, 928, 1228
BseLI CCNNNNNNNGG 1 cut(s) 258
BseMI GCAATG 2 cut(s) 675, 1164
BseMII CTCAG 3 cut(s) 447, 498, 1014
BseNI ACTGG 1 cut(s) 1423
BseSI GKGCMC 1 cut(s) 504
BseXI GCAGC 3 cut(s) 284, 428, 646
BseYI CCCAGC 1 cut(s) 378
BsgI GTGCAG 1 cut(s) 291
BshFI GGCC 8 cut(s) 262, 333, 373, 1035, 1126, 1274, 1300, 1323
BshNI GGYRCC 2 cut(s) 544, 868
BsiHKAI GWGCWC 1 cut(s) 504
BsiSI CCGG 2 cut(s) 827, 975
BslFI GGGAC 3 cut(s) 395, 932, 1222
BslI CCNNNNNNNGG 1 cut(s) 258
BsmFI GGGAC 3 cut(s) 395, 932, 1222
BsnI GGCC 8 cut(s) 262, 333, 373, 1035, 1126, 1274, 1300, 1323
Bsp119I TTCGAA 1 cut(s) 225
Bsp1286I GDGCHC 1 cut(s) 504
Bsp143I GATC 4 cut(s) 172, 424, 829, 1138
Bsp19I CCATGG 1 cut(s) 194
BspACI CCGC 1 cut(s) 907
BspANI GGCC 8 cut(s) 262, 333, 373, 1035, 1126, 1274, 1300, 1323
BspCNI CTCAG 3 cut(s) 446, 499, 1013
BspHI TCATGA 1 cut(s) 661
BspLI GGNNCC 9 cut(s) 125, 135, 332, 546, 851, 870, 1036, 1065, 1127
BspMI ACCTGC 1 cut(s) 830
BspPI GGATC 1 cut(s) 837
BspQI GCTCTTC 1 cut(s) 37
BspT104I TTCGAA 1 cut(s) 225
BspT107I GGYRCC 2 cut(s) 544, 868
BsrDI GCAATG 2 cut(s) 675, 1164
BsrI ACTGG 1 cut(s) 1423
BssECI CCNNGG 7 cut(s) 194, 277, 674, 825, 973, 1007, 1129
BssMI GATC 4 cut(s) 172, 424, 829, 1138
BssNI GRCGYC 1 cut(s) 967
BssT1I CCWWGG 4 cut(s) 194, 674, 1007, 1129
Bst2UI CCWGG 2 cut(s) 279, 1325
Bst4CI ACNGT 3 cut(s) 355, 1213, 1445
Bst6I CTCTTC 4 cut(s) 37, 110, 1307, 1437
BstACI GRCGYC 1 cut(s) 967
BstBI TTCGAA 1 cut(s) 225
BstC8I GCNNGC 4 cut(s) 534, 873, 997, 1330
BstDEI CTNAG 6 cut(s) 119, 176, 433, 507, 1000, 1276
BstDSI CCRYGG 1 cut(s) 194
BstEII GGTNACC 1 cut(s) 395
BstF5I GGATG 3 cut(s) 92, 928, 1228
BstH2I RGCGCY 1 cut(s) 295
BstHHI GCGC 1 cut(s) 294
BstKTI GATC 4 cut(s) 175, 427, 832, 1141
BstMBI GATC 4 cut(s) 172, 424, 829, 1138
BstMWI GCNNNNNNNGC 7 cut(s) 291, 529, 643, 1072, 1132, 1306, 1329
BstNI CCWGG 2 cut(s) 279, 1325
BstPI GGTNACC 1 cut(s) 395
BstSCI CCNGG 4 cut(s) 277, 825, 973, 1323
BstSLI GKGCMC 1 cut(s) 504
BstV1I GCAGC 3 cut(s) 284, 428, 646
BstV2I GAAGAC 2 cut(s) 238, 340
BstXI CCANNNNNNTGG 2 cut(s) 144, 167
BsuI GTATCC 1 cut(s) 1229
BsuRI GGCC 8 cut(s) 262, 333, 373, 1035, 1126, 1274, 1300, 1323
BtgI CCRYGG 1 cut(s) 194
BtsCI GGATG 3 cut(s) 92, 928, 1228
BtsI GCAGTG 1 cut(s) 1356
BtsIMutI CAGTG 4 cut(s) 351, 504, 1218, 1356
BveI ACCTGC 1 cut(s) 830
Cac8I GCNNGC 4 cut(s) 534, 873, 997, 1330
CciI TCATGA 1 cut(s) 661
CfoI GCGC 1 cut(s) 294
Cfr13I GGNCC 6 cut(s) 215, 331, 1004, 1034, 1125, 1298
CseI GACGC 1 cut(s) 975
Csp6I GTAC 2 cut(s) 310, 1426
CviQI GTAC 2 cut(s) 310, 1426
DdeI CTNAG 6 cut(s) 119, 176, 433, 507, 1000, 1276
DpnI GATC 4 cut(s) 174, 426, 831, 1140
DpnII GATC 4 cut(s) 172, 424, 829, 1138
DraI TTTAAA 1 cut(s) 703
Eam1104I CTCTTC 4 cut(s) 37, 110, 1307, 1437
EarI CTCTTC 4 cut(s) 37, 110, 1307, 1437
Eco130I CCWWGG 4 cut(s) 194, 674, 1007, 1129
Eco147I AGGCCT 3 cut(s) 373, 1274, 1323
Eco47I GGWCC 2 cut(s) 215, 1004
Eco57I CTGAAG 3 cut(s) 113, 345, 1331
Eco91I GGTNACC 1 cut(s) 395
EcoO109I RGGNCCY 3 cut(s) 1004, 1034, 1125
EcoO65I GGTNACC 1 cut(s) 395
EcoRII CCWGG 2 cut(s) 277, 1323
EcoT14I CCWWGG 4 cut(s) 194, 674, 1007, 1129
EcoT22I ATGCAT 1 cut(s) 728
ErhI CCWWGG 4 cut(s) 194, 674, 1007, 1129
FalI AAGNNNNNCTT 6 cut(s) 19, 51, 384, 416, 600, 632
FaqI GGGAC 3 cut(s) 395, 932, 1222
FauNDI CATATG 1 cut(s) 722
FbaI TGATCA 1 cut(s) 424
FblI GTMKAC 1 cut(s) 408
Fnu4HI GCNGC 3 cut(s) 273, 417, 635
FokI GGATG 3 cut(s) 79, 915, 1235
Fsp4HI GCNGC 3 cut(s) 273, 417, 635
FspBI CTAG 3 cut(s) 327, 752, 1052
GlaI GCGC 1 cut(s) 293
GluI GCNGC 3 cut(s) 273, 417, 635
GsaI CCCAGC 1 cut(s) 382
HaeII RGCGCY 1 cut(s) 295
HaeIII GGCC 8 cut(s) 262, 333, 373, 1035, 1126, 1274, 1300, 1323
HapII CCGG 2 cut(s) 827, 975
HgaI GACGC 1 cut(s) 975
HhaI GCGC 1 cut(s) 294
Hin1I GRCGYC 1 cut(s) 967
Hin6I GCGC 1 cut(s) 292
HinP1I GCGC 1 cut(s) 292
HincII GTYRAC 2 cut(s) 439, 757
HindII GTYRAC 2 cut(s) 439, 757
HinfI GANTC 2 cut(s) 340, 1280
HpaI GTTAAC 1 cut(s) 757
HpaII CCGG 2 cut(s) 827, 975
HphI GGTGA 4 cut(s) 64, 182, 755, 1239
Hpy166II GTNNAC 6 cut(s) 409, 439, 502, 757, 1111, 1356
Hpy188I TCNGA 5 cut(s) 215, 364, 643, 854, 965
Hpy188III TCNNGA 4 cut(s) 131, 235, 662, 833
Hpy8I GTNNAC 6 cut(s) 409, 439, 502, 757, 1111, 1356
HpyAV CCTTC 7 cut(s) 137, 369, 386, 410, 1011, 1039, 1165
HpyCH4III ACNGT 3 cut(s) 355, 1213, 1445
HpyF10VI GCNNNNNNNGC 7 cut(s) 291, 529, 643, 1072, 1132, 1306, 1329
HpyF3I CTNAG 6 cut(s) 119, 176, 433, 507, 1000, 1276
Hsp92I GRCGYC 1 cut(s) 967
HspAI GCGC 1 cut(s) 292
Ksp22I TGATCA 1 cut(s) 424
KspAI GTTAAC 1 cut(s) 757
Kzo9I GATC 4 cut(s) 172, 424, 829, 1138
LguI GCTCTTC 1 cut(s) 37
LmnI GCTCC 4 cut(s) 289, 1055, 1063, 1072
Lsp1109I GCAGC 3 cut(s) 284, 428, 646
LweI GCATC 4 cut(s) 122, 172, 937, 1382
MaeI CTAG 3 cut(s) 327, 752, 1052
MaeIII GTNAC 3 cut(s) 395, 559, 600
MalI GATC 4 cut(s) 174, 426, 831, 1140
MboI GATC 4 cut(s) 172, 424, 829, 1138
MfeI CAATTG 1 cut(s) 957
MhlI GDGCHC 1 cut(s) 504
MlyI GAGTC 1 cut(s) 1289
MmeI TCCRAC 1 cut(s) 63
Mph1103I ATGCAT 1 cut(s) 728
MseI TTAA 3 cut(s) 702, 756, 1447
MslI CAYNNNNRTG 3 cut(s) 531, 890, 975
MspI CCGG 2 cut(s) 827, 975
MspR9I CCNGG 4 cut(s) 279, 827, 975, 1325
MunI CAATTG 1 cut(s) 957
MvaI CCWGG 2 cut(s) 279, 1325
MwoI GCNNNNNNNGC 7 cut(s) 291, 529, 643, 1072, 1132, 1306, 1329
NciI CCSGG 2 cut(s) 827, 975
NcoI CCATGG 1 cut(s) 194
NdeI CATATG 1 cut(s) 722
NdeII GATC 4 cut(s) 172, 424, 829, 1138
NlaIV GGNNCC 9 cut(s) 125, 135, 332, 546, 851, 870, 1036, 1065, 1127
NmuCI GTSAC 1 cut(s) 559
NsiI ATGCAT 1 cut(s) 728
NspV TTCGAA 1 cut(s) 225
OliI CACNNNNGTG 1 cut(s) 975
PagI TCATGA 1 cut(s) 661
PaqCI CACCTGC 1 cut(s) 830
PceI AGGCCT 3 cut(s) 373, 1274, 1323
PciSI GCTCTTC 1 cut(s) 37
PfeI GAWTC 1 cut(s) 340
PflMI CCANNNNNTGG 1 cut(s) 258
PkrI GCNGC 3 cut(s) 274, 418, 636
PleI GAGTC 1 cut(s) 1288
PpsI GAGTC 1 cut(s) 1288
PpuMI RGGWCCY 1 cut(s) 1004
Psp5II RGGWCCY 1 cut(s) 1004
Psp6I CCWGG 2 cut(s) 277, 1323
PspEI GGTNACC 1 cut(s) 395
PspFI CCCAGC 1 cut(s) 378
PspGI CCWGG 2 cut(s) 277, 1323
PspN4I GGNNCC 9 cut(s) 125, 135, 332, 546, 851, 870, 1036, 1065, 1127
PspPI GGNCC 6 cut(s) 215, 331, 1004, 1034, 1125, 1298
PspPPI RGGWCCY 1 cut(s) 1004
RsaI GTAC 2 cut(s) 311, 1427
RsaNI GTAC 2 cut(s) 310, 1426
RseI CAYNNNNRTG 3 cut(s) 531, 890, 975
SapI GCTCTTC 1 cut(s) 37
SaqAI TTAA 3 cut(s) 702, 756, 1447
SatI GCNGC 3 cut(s) 273, 417, 635
Sau3AI GATC 4 cut(s) 172, 424, 829, 1138
Sau96I GGNCC 6 cut(s) 215, 331, 1004, 1034, 1125, 1298
SchI GAGTC 1 cut(s) 1289
ScrFI CCNGG 4 cut(s) 279, 827, 975, 1325
SduI GDGCHC 1 cut(s) 504
SfaNI GCATC 4 cut(s) 122, 172, 937, 1382
SfuI TTCGAA 1 cut(s) 225
SinI GGWCC 2 cut(s) 215, 1004
SmiMI CAYNNNNRTG 3 cut(s) 531, 890, 975
SmlI CTYRAG 1 cut(s) 233
SmoI CTYRAG 1 cut(s) 233
SseBI AGGCCT 3 cut(s) 373, 1274, 1323
SsiI CCGC 1 cut(s) 907
SspI AATATT 1 cut(s) 1418
SspMI CTAG 3 cut(s) 327, 752, 1052
StuI AGGCCT 3 cut(s) 373, 1274, 1323
StyD4I CCNGG 4 cut(s) 277, 825, 973, 1323
StyI CCWWGG 4 cut(s) 194, 674, 1007, 1129
TaaI ACNGT 3 cut(s) 355, 1213, 1445
TaqI TCGA 2 cut(s) 225, 684
TfiI GAWTC 1 cut(s) 340
Tru1I TTAA 3 cut(s) 702, 756, 1447
Tru9I TTAA 3 cut(s) 702, 756, 1447
TscAI CASTG 4 cut(s) 358, 511, 1218, 1363
TseFI GTSAC 1 cut(s) 559
TseI GCWGC 3 cut(s) 272, 416, 634
Tsp45I GTSAC 1 cut(s) 559
TspRI CASTG 4 cut(s) 358, 511, 1218, 1363
Van91I CCANNNNNTGG 1 cut(s) 258
VneI GTGCAC 1 cut(s) 500
VpaK11BI GGWCC 2 cut(s) 215, 1004
XapI RAATTY 5 cut(s) 188, 690, 818, 1082, 1229
XmiI GTMKAC 1 cut(s) 408
XspI CTAG 3 cut(s) 327, 752, 1052
Zsp2I ATGCAT 1 cut(s) 728
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.