Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0014525

Physical Location & Seq

Genomic Coordinates Forward (+)

25794269 .. 25795463

Gene Structure 1195 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG219500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

ATGAGAGTGGCAGGGCGGCTGGTTAGGGACAAAGGGCATCCACTTCTTTACAAAGCCTTTTCTTCAATTGTGAAGCGCTACCCCGGCGTGTTTTTGCTTGTGGCAGGGTCGGGTCCTTGGAGAAGAAGGTATGCTGAATTAGGCCCAAATGTGAAGGTTCTAGGACCATTGGAGCCATTGGAGCTGTCTAAGTTTTACAATGCTCTTGATCTGTTTGTGAACCCCACATTGAGGCCCCAAGGGCTTGATCTAACATTGATTGAAGCAATGCAAAGTGGGAAGACAGTTCTAACTACAAACTATCCAAGCATTGTTAGGACAGTGGTGGTGGGTGAAGAATTTGGATACACTTTTTCACCCAATGTCAAGTCTTTTGTTGAGGCTTTGGAGTCAGCCATAAAAGATGGGTCTAATGTGCTGAAGAAGAAAGGGGTGGCTTGCAAAAACTATGTGCATTCGATGTTCACTGCAACCAAGATGGCATCGGCTTATGAGCGGCAGTACATTGCCAAGCCTCAACTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_trans_1_4 Glyco_transf_4 Glycos_transf_1

Protein Analysis

174

Amino Acids

19.34

Weight (kDa)

9.81

Isoelectric Point (pI)

37.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glycos_transf_1	PF00534	4 - 136	1.3e-20	Glycosyl transferases group 1
Glyco_trans_1_4	PF13692	4 - 135	2.4e-20	Glycosyl transferases group 1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014525)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G73160
fragaria_vesca	FvH4_3g18700
malus_domestica	MD11G1259200.v1.1
prunus_persica	Prupe.4G170700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0031511
rosa_laevigata	RLG00000033317 RLG00000033318
rosa_multiflora	Rmu_sc0006344.1_g000008 Rmu_sc0009888.1_g000003
rosa_roxburghii	Rroxscaffold_1G00048810
rosa_rugosa	Rorug05G0126700
rosa_samantha	Rh5AG219400 Rh5AG219500 Rh5BG218800 Rh5CG242400 Rh5DG224300
rosa_wichuraiana	Rw5G020010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	496
AciI	CCGC	2 cut(s)	16, 496
AcsI	RAATTY	1 cut(s)	338
AcuI	CTGAAG	1 cut(s)	440
AfaI	GTAC	1 cut(s)	503
AfeI	AGCGCT	1 cut(s)	77
AfiI	CCNNNNNNNGG	1 cut(s)	231
AgsI	TTSAA	2 cut(s)	66, 263
AluBI	AGCT	1 cut(s)	184
AluI	AGCT	1 cut(s)	184
Aor51HI	AGCGCT	1 cut(s)	77
AoxI	GGCC	2 cut(s)	142, 233
ApoI	RAATTY	1 cut(s)	338
AspLEI	GCGC	1 cut(s)	78
AspS9I	GGNCC	4 cut(s)	113, 143, 164, 234
AsuC2I	CCSGG	1 cut(s)	84
AsuHPI	GGTGA	2 cut(s)	344, 348
AvaII	GGWCC	2 cut(s)	113, 164
BbsI	GAAGAC	1 cut(s)	287
BccI	CCATC	2 cut(s)	398, 472
BciVI	GTATCC	1 cut(s)	338
BcnI	CCSGG	1 cut(s)	84
BfaI	CTAG	1 cut(s)	161
BfoI	RGCGCY	1 cut(s)	79
BfuI	GTATCC	1 cut(s)	338
BglI	GCCNNNNNGGC	1 cut(s)	241
BisI	GCNGC	2 cut(s)	17, 497
BlsI	GCNGC	2 cut(s)	18, 498
Bme1390I	CCNGG	1 cut(s)	84
Bme18I	GGWCC	2 cut(s)	113, 164
BmgT120I	GGNCC	4 cut(s)	113, 143, 164, 234
BmiI	GGNNCC	3 cut(s)	114, 174, 236
BmrFI	CCNGG	1 cut(s)	84
BmsI	GCATC	2 cut(s)	46, 491
BpiI	GAAGAC	1 cut(s)	287
BpuMI	CCSGG	1 cut(s)	84
BsaJI	CCNNGG	3 cut(s)	82, 116, 238
Bsc4I	CCNNNNNNNGG	1 cut(s)	231
Bse3DI	GCAATG	2 cut(s)	273, 504
BseDI	CCNNGG	3 cut(s)	82, 116, 238
BseGI	GGATG	1 cut(s)	37
BseLI	CCNNNNNNNGG	1 cut(s)	231
BseMI	GCAATG	2 cut(s)	273, 504
BshFI	GGCC	2 cut(s)	144, 235
BsiSI	CCGG	1 cut(s)	84
BslFI	GGGAC	1 cut(s)	41
BslI	CCNNNNNNNGG	1 cut(s)	231
BsmFI	GGGAC	1 cut(s)	41
BsmI	GAATGC	1 cut(s)	454
BsnI	GGCC	2 cut(s)	144, 235
Bsp143I	GATC	2 cut(s)	208, 247
BspACI	CCGC	2 cut(s)	16, 496
BspANI	GGCC	2 cut(s)	144, 235
BspLI	GGNNCC	3 cut(s)	114, 174, 236
BsrBI	CCGCTC	1 cut(s)	496
BsrDI	GCAATG	2 cut(s)	273, 504
BssECI	CCNNGG	3 cut(s)	82, 116, 238
BssMI	GATC	2 cut(s)	208, 247
BssT1I	CCWWGG	2 cut(s)	116, 238
Bst4CI	ACNGT	2 cut(s)	286, 322
BstC8I	GCNNGC	1 cut(s)	439
BstDEI	CTNAG	1 cut(s)	189
BstF5I	GGATG	1 cut(s)	37
BstH2I	RGCGCY	1 cut(s)	79
BstHHI	GCGC	1 cut(s)	78
BstKTI	GATC	2 cut(s)	211, 250
BstMBI	GATC	2 cut(s)	208, 247
BstMWI	GCNNNNNNNGC	3 cut(s)	84, 181, 241
BstSCI	CCNGG	1 cut(s)	82
BstV2I	GAAGAC	1 cut(s)	287
BsuI	GTATCC	1 cut(s)	338
BsuRI	GGCC	2 cut(s)	144, 235
BtsCI	GGATG	1 cut(s)	37
BtsI	GCAGTG	1 cut(s)	465
BtsIMutI	CAGTG	2 cut(s)	327, 465
Cac8I	GCNNGC	1 cut(s)	439
CfoI	GCGC	1 cut(s)	78
Cfr13I	GGNCC	4 cut(s)	113, 143, 164, 234
Csp6I	GTAC	1 cut(s)	502
CviQI	GTAC	1 cut(s)	502
DdeI	CTNAG	1 cut(s)	189
DpnI	GATC	2 cut(s)	210, 249
DpnII	GATC	2 cut(s)	208, 247
Eco130I	CCWWGG	2 cut(s)	116, 238
Eco47I	GGWCC	2 cut(s)	113, 164
Eco47III	AGCGCT	1 cut(s)	77
Eco57I	CTGAAG	1 cut(s)	440
EcoO109I	RGGNCCY	2 cut(s)	113, 234
EcoT14I	CCWWGG	2 cut(s)	116, 238
ErhI	CCWWGG	2 cut(s)	116, 238
FaiI	YATR	5 cut(s)	132, 398, 450, 492, 523
FaqI	GGGAC	1 cut(s)	41
Fnu4HI	GCNGC	2 cut(s)	17, 497
FokI	GGATG	1 cut(s)	24
Fsp4HI	GCNGC	2 cut(s)	17, 497
FspBI	CTAG	1 cut(s)	161
GlaI	GCGC	1 cut(s)	77
GluI	GCNGC	2 cut(s)	17, 497
HaeII	RGCGCY	1 cut(s)	79
HaeIII	GGCC	2 cut(s)	144, 235
HapII	CCGG	1 cut(s)	84
HhaI	GCGC	1 cut(s)	78
Hin6I	GCGC	1 cut(s)	76
HinP1I	GCGC	1 cut(s)	76
HinfI	GANTC	1 cut(s)	389
HpaII	CCGG	1 cut(s)	84
HphI	GGTGA	2 cut(s)	344, 348
Hpy166II	GTNNAC	2 cut(s)	220, 465
Hpy188III	TCNNGA	1 cut(s)	206
Hpy8I	GTNNAC	2 cut(s)	220, 465
HpyAV	CCTTC	2 cut(s)	120, 148
HpyCH4III	ACNGT	2 cut(s)	286, 322
HpyCH4V	TGCA	4 cut(s)	271, 441, 454, 470
HpyF10VI	GCNNNNNNNGC	3 cut(s)	84, 181, 241
HpyF3I	CTNAG	1 cut(s)	189
HspAI	GCGC	1 cut(s)	76
Kzo9I	GATC	2 cut(s)	208, 247
LmnI	GCTCC	2 cut(s)	172, 181
LpnPI	CCDG	3 cut(s)	5, 90, 97
LweI	GCATC	2 cut(s)	46, 491
MaeI	CTAG	1 cut(s)	161
MalI	GATC	2 cut(s)	210, 249
MbiI	CCGCTC	1 cut(s)	496
MboI	GATC	2 cut(s)	208, 247
MboII	GAAGA	6 cut(s)	54, 135, 292, 347, 433, 436
MfeI	CAATTG	1 cut(s)	66
MluCI	AATT	3 cut(s)	66, 137, 338
MlyI	GAGTC	1 cut(s)	398
MnlI	CCTC	3 cut(s)	225, 373, 525
MspI	CCGG	1 cut(s)	84
MspR9I	CCNGG	1 cut(s)	84
MunI	CAATTG	1 cut(s)	66
Mva1269I	GAATGC	1 cut(s)	454
MwoI	GCNNNNNNNGC	3 cut(s)	84, 181, 241
NciI	CCSGG	1 cut(s)	84
NdeII	GATC	2 cut(s)	208, 247
NlaIV	GGNNCC	3 cut(s)	114, 174, 236
PctI	GAATGC	1 cut(s)	454
PkrI	GCNGC	2 cut(s)	18, 498
PleI	GAGTC	1 cut(s)	397
PpsI	GAGTC	1 cut(s)	397
PpuMI	RGGWCCY	1 cut(s)	113
Psp5II	RGGWCCY	1 cut(s)	113
PspN4I	GGNNCC	3 cut(s)	114, 174, 236
PspPI	GGNCC	4 cut(s)	113, 143, 164, 234
PspPPI	RGGWCCY	1 cut(s)	113
RsaI	GTAC	1 cut(s)	503
RsaNI	GTAC	1 cut(s)	502
SatI	GCNGC	2 cut(s)	17, 497
Sau3AI	GATC	2 cut(s)	208, 247
Sau96I	GGNCC	4 cut(s)	113, 143, 164, 234
SchI	GAGTC	1 cut(s)	398
ScrFI	CCNGG	1 cut(s)	84
SetI	ASST	3 cut(s)	131, 159, 186
SfaNI	GCATC	2 cut(s)	46, 491
SinI	GGWCC	2 cut(s)	113, 164
Sse9I	AATT	3 cut(s)	66, 137, 338
SsiI	CCGC	2 cut(s)	16, 496
SspMI	CTAG	1 cut(s)	161
StyD4I	CCNGG	1 cut(s)	82
StyI	CCWWGG	2 cut(s)	116, 238
TaaI	ACNGT	2 cut(s)	286, 322
TaqI	TCGA	1 cut(s)	458
TasI	AATT	3 cut(s)	66, 137, 338
TatI	WGTACW	1 cut(s)	501
TauI	GCSGC	2 cut(s)	19, 499
TscAI	CASTG	2 cut(s)	327, 472
TspRI	CASTG	2 cut(s)	327, 472
VpaK11BI	GGWCC	2 cut(s)	113, 164
XapI	RAATTY	1 cut(s)	338
XspI	CTAG	1 cut(s)	161

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.