Rw5G020010

Glycosyl transferases group 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0014525
Physical Location & Seq
Forward (+)
26084931 .. 26086103
1173 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G020010.1

Sequence Viewer

Length: 1044 bp
ATGGAGCGCCATGCTTCCACATTGTACCAAGCACTTGCTGCAAAGGTCATGAGTTCATGTCTTCACTGTAACCTTAATGTTTATTTTGCAGCTAATGATCATGGCTCTGTTAATTGTTCTCTAGCGTTTGAAATTTTCAATAAAGTTAACTCGGATGGGGCATTCGATTATGTGCACACCGAGAGTGTTTCGTTGCCTTATTGGCGTGCGAAGATGCTGCCAAATGTGGCTGTCACTTGGCATGGGATATGGTACGAAATAATGCATTCCAAGCTCGTTGAGGAGATTCGATTCTTTAAGAGCTATACGCAGCATATATGCATAAGCAATAATGCTGGTGAGGTTCTGGTCAACATCTATCAGATCCCACAGAGAAATGTGCATGTTATACTTAATGGCGTTGATGAGAAAGAATTTGTGCCAGACCAAGAAGCGGGTGCAAGGTTCCGAGAAAAACATGGTGTACCTGCCAATGTGAGCCTTGTGATGAGAGTGGCAGGGCGGCTGGTTAGGGACAAAGGGCATCCACTTCTTTACAAAGCCTTTTCTTCAATTGTGAAGCGCTACCCCGGCGTGTTTTTGCTTGTGGCAGGGTCGGGTCCTTGGAGAAGAAGGTATGCTGAATTAGGCCCAAATGTGAAGGTTCTAGGACCATTGGAGCCATTGGAGCTGTCTAAGTTTTACAATGCTCTTGATCTGTTTGTGAACCCCACATTGAGGCCCCAAGGGCTTGATCTAACATTGATTGAAGCAATGCAAAGTGGGAAGACAGTTCTAACTCCAAACTATCCAAGCATTGTTAGGACAGTGGTGGTGGGTGAAGAATTTGGATACACTTTTTCACCCAATGTCAAGTCTTTTGTTGAGGCTTTGGAGTCAGCCATAAAAGATGGGTCTAATGTGCTGAAGAAGAAAGGGGTGGCTTGCAAAAACTATGTGCATTCGATGTTCACTGCAACCAAGATGGCATCGGCTTATGAGCGGTTCTTTCTGTGCATGAAGAACCCAAAATACTGTCAGTACCCTCTTTCCACTGATTGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glyco_trans_1_4 Glyco_transf_4 Glycos_transf_1

Protein Analysis

347

Amino Acids

39.06

Weight (kDa)

8.95

Isoelectric Point (pI)

37.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_4 PF13439 54 - 136 6.6e-08 Glycosyltransferase Family 4
Glycos_transf_1 PF00534 163 - 298 6.3e-19 Glycosyl transferases group 1
Glyco_trans_1_4 PF13692 165 - 297 2.6e-18 Glycosyl transferases group 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014525)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G73160
fragaria_vesca FvH4_3g18700
malus_domestica MD11G1259200.v1.1
prunus_persica Prupe.4G170700_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0031511
rosa_laevigata RLG00000033317 RLG00000033318
rosa_multiflora Rmu_sc0006344.1_g000008 Rmu_sc0009888.1_g000003
rosa_roxburghii Rroxscaffold_1G00048810
rosa_rugosa Rorug05G0126700
rosa_samantha Rh5AG219400 Rh5AG219500 Rh5BG218800 Rh5CG242400 Rh5DG224300
rosa_wichuraiana Rw5G020010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 475
AccBSI CCGCTC 1 cut(s) 982
AciI CCGC 3 cut(s) 434, 502, 982
AclWI GGATC 1 cut(s) 358
AcsI RAATTY 3 cut(s) 132, 413, 824
AcuI CTGAAG 1 cut(s) 926
AfaI GTAC 4 cut(s) 26, 254, 465, 1022
AfeI AGCGCT 1 cut(s) 563
AfiI CCNNNNNNNGG 2 cut(s) 433, 717
AgsI TTSAA 4 cut(s) 131, 139, 552, 749
AluBI AGCT 4 cut(s) 92, 274, 303, 670
AluI AGCT 4 cut(s) 92, 274, 303, 670
Alw21I GWGCWC 1 cut(s) 177
Alw44I GTGCAC 1 cut(s) 173
AlwI GGATC 1 cut(s) 358
Aor51HI AGCGCT 1 cut(s) 563
AoxI GGCC 2 cut(s) 628, 719
ApaLI GTGCAC 1 cut(s) 173
ApeKI GCWGC 4 cut(s) 38, 89, 217, 310
ApoI RAATTY 3 cut(s) 132, 413, 824
AspLEI GCGC 2 cut(s) 9, 564
AspS9I GGNCC 4 cut(s) 599, 629, 650, 720
AsuC2I CCSGG 1 cut(s) 570
AsuHPI GGTGA 3 cut(s) 350, 830, 834
AvaII GGWCC 2 cut(s) 599, 650
BaeGI GKGCMC 1 cut(s) 177
BbsI GAAGAC 2 cut(s) 53, 773
Bbv12I GWGCWC 1 cut(s) 177
BbvI GCAGC 4 cut(s) 25, 101, 204, 322
BccI CCATC 3 cut(s) 149, 884, 958
BcgI CGANNNNNNTGC 2 cut(s) 199, 233
BciVI GTATCC 1 cut(s) 824
BclI TGATCA 1 cut(s) 97
BcnI CCSGG 1 cut(s) 570
BfaI CTAG 2 cut(s) 122, 647
BfoI RGCGCY 2 cut(s) 10, 565
BfuAI ACCTGC 1 cut(s) 475
BfuI GTATCC 1 cut(s) 824
BglI GCCNNNNNGGC 2 cut(s) 202, 727
BisI GCNGC 5 cut(s) 39, 90, 218, 311, 503
BlsI GCNGC 5 cut(s) 40, 91, 219, 312, 504
Bme1390I CCNGG 1 cut(s) 570
Bme18I GGWCC 2 cut(s) 599, 650
BmgT120I GGNCC 4 cut(s) 599, 629, 650, 720
BmiI GGNNCC 4 cut(s) 446, 600, 660, 722
BmrFI CCNGG 1 cut(s) 570
BmsI GCATC 3 cut(s) 204, 532, 977
BpiI GAAGAC 2 cut(s) 53, 773
BpuMI CCSGG 1 cut(s) 570
BsaJI CCNNGG 3 cut(s) 568, 602, 724
Bsc4I CCNNNNNNNGG 2 cut(s) 433, 717
Bse3DI GCAATG 1 cut(s) 759
BseDI CCNNGG 3 cut(s) 568, 602, 724
BseGI GGATG 2 cut(s) 160, 523
BseLI CCNNNNNNNGG 2 cut(s) 433, 717
BseMI GCAATG 1 cut(s) 759
BseRI GAGGAG 1 cut(s) 296
BseSI GKGCMC 1 cut(s) 177
BseXI GCAGC 4 cut(s) 25, 101, 204, 322
BshFI GGCC 2 cut(s) 630, 721
BsiHKAI GWGCWC 1 cut(s) 177
BsiSI CCGG 1 cut(s) 570
BslFI GGGAC 1 cut(s) 527
BslI CCNNNNNNNGG 2 cut(s) 433, 717
BsmFI GGGAC 1 cut(s) 527
BsmI GAATGC 3 cut(s) 161, 265, 940
BsnI GGCC 2 cut(s) 630, 721
Bsp1286I GDGCHC 1 cut(s) 177
Bsp143I GATC 4 cut(s) 97, 363, 694, 733
BspACI CCGC 3 cut(s) 434, 502, 982
BspANI GGCC 2 cut(s) 630, 721
BspHI TCATGA 1 cut(s) 48
BspLI GGNNCC 4 cut(s) 446, 600, 660, 722
BspMI ACCTGC 1 cut(s) 475
BspPI GGATC 1 cut(s) 358
BsrBI CCGCTC 1 cut(s) 982
BsrDI GCAATG 1 cut(s) 759
BssECI CCNNGG 3 cut(s) 568, 602, 724
BssMI GATC 4 cut(s) 97, 363, 694, 733
BssT1I CCWWGG 2 cut(s) 602, 724
Bst4CI ACNGT 4 cut(s) 68, 772, 808, 1016
BstAPI GCANNNNNTGC 1 cut(s) 38
BstC8I GCNNGC 2 cut(s) 207, 925
BstDEI CTNAG 1 cut(s) 675
BstF5I GGATG 2 cut(s) 160, 523
BstH2I RGCGCY 2 cut(s) 10, 565
BstHHI GCGC 2 cut(s) 9, 564
BstKTI GATC 4 cut(s) 100, 366, 697, 736
BstMBI GATC 4 cut(s) 97, 363, 694, 733
BstMWI GCNNNNNNNGC 6 cut(s) 38, 202, 271, 570, 667, 727
BstNSI RCATGY 1 cut(s) 386
BstSCI CCNGG 1 cut(s) 568
BstSLI GKGCMC 1 cut(s) 177
BstV1I GCAGC 4 cut(s) 25, 101, 204, 322
BstV2I GAAGAC 2 cut(s) 53, 773
BstX2I RGATCY 1 cut(s) 363
BstYI RGATCY 1 cut(s) 363
BsuI GTATCC 1 cut(s) 824
BsuRI GGCC 2 cut(s) 630, 721
BtsCI GGATG 2 cut(s) 160, 523
BtsI GCAGTG 1 cut(s) 951
BtsIMutI CAGTG 4 cut(s) 64, 813, 951, 1032
BveI ACCTGC 1 cut(s) 475
Cac8I GCNNGC 2 cut(s) 207, 925
CciI TCATGA 1 cut(s) 48
CfoI GCGC 2 cut(s) 9, 564
Cfr13I GGNCC 4 cut(s) 599, 629, 650, 720
Csp6I GTAC 4 cut(s) 25, 253, 464, 1021
CviAII CATG 8 cut(s) 11, 49, 57, 101, 242, 383, 458, 997
CviQI GTAC 4 cut(s) 25, 253, 464, 1021
DdeI CTNAG 1 cut(s) 675
DpnI GATC 4 cut(s) 99, 365, 696, 735
DpnII GATC 4 cut(s) 97, 363, 694, 733
Eco130I CCWWGG 2 cut(s) 602, 724
Eco47I GGWCC 2 cut(s) 599, 650
Eco47III AGCGCT 1 cut(s) 563
Eco57I CTGAAG 1 cut(s) 926
EcoO109I RGGNCCY 2 cut(s) 599, 720
EcoT14I CCWWGG 2 cut(s) 602, 724
EcoT22I ATGCAT 2 cut(s) 267, 323
ErhI CCWWGG 2 cut(s) 602, 724
FaeI CATG 8 cut(s) 14, 52, 60, 104, 245, 386, 461, 1000
FaqI GGGAC 1 cut(s) 527
FatI CATG 8 cut(s) 10, 48, 56, 100, 241, 382, 457, 996
FauI CCCGC 1 cut(s) 427
FbaI TGATCA 1 cut(s) 97
Fnu4HI GCNGC 5 cut(s) 39, 90, 218, 311, 503
FokI GGATG 2 cut(s) 167, 510
Fsp4HI GCNGC 5 cut(s) 39, 90, 218, 311, 503
FspBI CTAG 2 cut(s) 122, 647
GlaI GCGC 2 cut(s) 8, 563
GluI GCNGC 5 cut(s) 39, 90, 218, 311, 503
HaeII RGCGCY 2 cut(s) 10, 565
HaeIII GGCC 2 cut(s) 630, 721
HapII CCGG 1 cut(s) 570
HhaI GCGC 2 cut(s) 9, 564
Hin1II CATG 8 cut(s) 14, 52, 60, 104, 245, 386, 461, 1000
Hin6I GCGC 2 cut(s) 7, 562
HinP1I GCGC 2 cut(s) 7, 562
HincII GTYRAC 2 cut(s) 148, 352
HindII GTYRAC 2 cut(s) 148, 352
HinfI GANTC 3 cut(s) 286, 291, 875
HpaI GTTAAC 1 cut(s) 148
HpaII CCGG 1 cut(s) 570
HphI GGTGA 3 cut(s) 350, 830, 834
Hpy166II GTNNAC 6 cut(s) 148, 175, 352, 464, 706, 951
Hpy188I TCNGA 3 cut(s) 154, 363, 449
Hpy188III TCNNGA 2 cut(s) 49, 692
Hpy8I GTNNAC 6 cut(s) 148, 175, 352, 464, 706, 951
HpyAV CCTTC 2 cut(s) 606, 634
HpyCH4III ACNGT 4 cut(s) 68, 772, 808, 1016
HpyF10VI GCNNNNNNNGC 6 cut(s) 38, 202, 271, 570, 667, 727
HpyF3I CTNAG 1 cut(s) 675
Hsp92II CATG 8 cut(s) 14, 52, 60, 104, 245, 386, 461, 1000
HspAI GCGC 2 cut(s) 7, 562
Ksp22I TGATCA 1 cut(s) 97
KspAI GTTAAC 1 cut(s) 148
Kzo9I GATC 4 cut(s) 97, 363, 694, 733
LmnI GCTCC 3 cut(s) 4, 658, 667
LpnPI CCDG 8 cut(s) 321, 332, 435, 480, 483, 491, 576, 583
Lsp1109I GCAGC 4 cut(s) 25, 101, 204, 322
LweI GCATC 3 cut(s) 204, 532, 977
MaeI CTAG 2 cut(s) 122, 647
MaeIII GTNAC 2 cut(s) 68, 232
MalI GATC 4 cut(s) 99, 365, 696, 735
MbiI CCGCTC 1 cut(s) 982
MboI GATC 4 cut(s) 97, 363, 694, 733
MboII GAAGA 9 cut(s) 53, 223, 540, 621, 778, 833, 919, 922, 1012
MfeI CAATTG 1 cut(s) 552
MflI RGATCY 1 cut(s) 363
MhlI GDGCHC 1 cut(s) 177
MluCI AATT 6 cut(s) 112, 132, 413, 552, 623, 824
MlyI GAGTC 1 cut(s) 884
MnlI CCTC 5 cut(s) 274, 334, 711, 859, 1035
Mph1103I ATGCAT 2 cut(s) 267, 323
MseI TTAA 5 cut(s) 75, 111, 147, 297, 393
MspI CCGG 1 cut(s) 570
MspR9I CCNGG 1 cut(s) 570
MunI CAATTG 1 cut(s) 552
Mva1269I GAATGC 3 cut(s) 161, 265, 940
MwoI GCNNNNNNNGC 6 cut(s) 38, 202, 271, 570, 667, 727
NciI CCSGG 1 cut(s) 570
NdeII GATC 4 cut(s) 97, 363, 694, 733
NlaIII CATG 8 cut(s) 14, 52, 60, 104, 245, 386, 461, 1000
NlaIV GGNNCC 4 cut(s) 446, 600, 660, 722
NmuCI GTSAC 1 cut(s) 232
NsiI ATGCAT 2 cut(s) 267, 323
NspI RCATGY 1 cut(s) 386
PagI TCATGA 1 cut(s) 48
PctI GAATGC 3 cut(s) 161, 265, 940
PfeI GAWTC 2 cut(s) 286, 291
PkrI GCNGC 5 cut(s) 40, 91, 219, 312, 504
PleI GAGTC 1 cut(s) 883
PpsI GAGTC 1 cut(s) 883
PpuMI RGGWCCY 1 cut(s) 599
Psp5II RGGWCCY 1 cut(s) 599
PspN4I GGNNCC 4 cut(s) 446, 600, 660, 722
PspPI GGNCC 4 cut(s) 599, 629, 650, 720
PspPPI RGGWCCY 1 cut(s) 599
PsrI GAACNNNNNNTAC 2 cut(s) 995, 1027
PsuI RGATCY 1 cut(s) 363
RsaI GTAC 4 cut(s) 26, 254, 465, 1022
RsaNI GTAC 4 cut(s) 25, 253, 464, 1021
SaqAI TTAA 5 cut(s) 75, 111, 147, 297, 393
SatI GCNGC 5 cut(s) 39, 90, 218, 311, 503
Sau3AI GATC 4 cut(s) 97, 363, 694, 733
Sau96I GGNCC 4 cut(s) 599, 629, 650, 720
SchI GAGTC 1 cut(s) 884
ScrFI CCNGG 1 cut(s) 570
SduI GDGCHC 1 cut(s) 177
SfaNI GCATC 3 cut(s) 204, 532, 977
SinI GGWCC 2 cut(s) 599, 650
Sse9I AATT 6 cut(s) 112, 132, 413, 552, 623, 824
SsiI CCGC 3 cut(s) 434, 502, 982
SspMI CTAG 2 cut(s) 122, 647
StyD4I CCNGG 1 cut(s) 568
StyI CCWWGG 2 cut(s) 602, 724
TaaI ACNGT 4 cut(s) 68, 772, 808, 1016
TaqI TCGA 3 cut(s) 165, 289, 944
TasI AATT 6 cut(s) 112, 132, 413, 552, 623, 824
TauI GCSGC 1 cut(s) 505
TfiI GAWTC 2 cut(s) 286, 291
Tru1I TTAA 5 cut(s) 75, 111, 147, 297, 393
Tru9I TTAA 5 cut(s) 75, 111, 147, 297, 393
TscAI CASTG 4 cut(s) 71, 813, 958, 1039
TseFI GTSAC 1 cut(s) 232
TseI GCWGC 4 cut(s) 38, 89, 217, 310
Tsp45I GTSAC 1 cut(s) 232
TspDTI ATGAA 2 cut(s) 45, 1013
TspRI CASTG 4 cut(s) 71, 813, 958, 1039
VneI GTGCAC 1 cut(s) 173
VpaK11BI GGWCC 2 cut(s) 599, 650
XapI RAATTY 3 cut(s) 132, 413, 824
XceI RCATGY 1 cut(s) 386
XspI CTAG 2 cut(s) 122, 647
Zsp2I ATGCAT 2 cut(s) 267, 323
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.