RchiOBHm_Chr5g0031511

Glycosyl transferases group 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0014525
Physical Location & Seq
Forward (+)
25090777 .. 25093237
2461 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ31077

Sequence Viewer

Length: 1518 bp
ATGGGATTGAAACACCAAACTTGCAAAAGCTCTTCATCTTCCAACTTCATGCCTATTAGATTCTCAACCATTCTCACTTTGATTCTACTCTCTACTTCCTTTTTCCTCTTCCTTTCATCACTCAAGAACACCCAAGAACCATTTTTTGGGGGTGATGAGAACACTCAATTCAATGGTGATCTTAGAGATGCTAAATTCCCATGGAACAAACTCTGTTTCGGTCCTTCTTTCGAAAAGCTCAAGCTAGCCGTCTTCTCCAAAACATGGCCAGTTGGTGCAGACGCGGGTGGTATGGAGCGCCATGCTTCCACATTGTACCAAGCACTTGCTGCAAAGGGTCATGAGATTCATGTCTTCACTGTGCCTTCAGATAGGAGGCCTCATTGGGACATACATGAAGGTAACCTTCATGTTTATTTTGCAGCTAATGATCATGGCTCTGTTAATTGTTCTCTAGCGTTTGAAATTTTCAATAAAGTTAAGTCGGATGGGGCATTCGATTATGTGCACACCGAGAGTGTTTCGTTGCCTTATTGGCGTGCCAAGATGCTGCCTAATGTGGCTGTCACTTGGCATGGGATATGGTACGAAATAATGCATTCCAAGTTACTGCAACAACTCCTCACCGACCCAAATGGGGACATGCTAGAGCCCATGACAGAGCTTCAAGAAGCAATGCCAAGGCTCGTTGAGGAGATTCGGTTCTTTAAGAGCTATACGCAGCATATATGCATAAGCAATAGTGCTGGTGAGGTTCTGGTCAACATCTATCAGATCCCACAGAGAAATGTGCATGTTATACTTAATGGCGTTGATGAGAAAGAATTTGTGCCAGACCAAGAAGCGGGTGCAAGGTTCCGACAAAAACATGGTGTACCTGCCAATGTGAGCCTTGTGATGGGAGTGGCAGGGCGGCTGGTTAGGGACAAAGGGCATCCACTTCTTTACAAAGCCTTTTCTTCAATTGTGAAGCGCTACCCCGGCGTGTTTTTGCTTGTGGCAGGGTCAGGTCCTTGGAGAAGAAGGTATGCTGAATTAGGCCCAAATGTGAAGGTTCTAGGACCATTGGAGCCATTGGAGCTGTCTAAGTTTTACAATGCTCTTGATCTGTTTGTGAACCCCACATTGAGGCCTCAAGGGCTTGATCTAACATTGATTGAAGCAATGCAAAGTGGGAAGACAGTTCTAACTCCAAACTATCCAAGCATTGTCAGGACAGTGGTGGTGGGTGAAGAATTTGGATATACTTTTTCACCCAATGTCAAGTCTTTTGTTGAGGCTTTGGAGTCAGCTATAAAAGATGGGTCTAATATGCTGAAGAAGAAAGGGGTGGCTTGCAAAAACTATGTGCATTCGATGTTCACTGCAACCAAGATGGCATCGGCTTATGAGCGGTTCTTTCTGTGCATGAAGAACCCAAAATACTTACATTGCCGAGCCTCAACTATAGAGCAAAACAATGCAGTCTATATTGAAAATAATCAGACGAAAACAGCAAGAACAGATGGCAGGTCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glyco_trans_1_4 Glyco_transf_4 Glycos_transf_1

Protein Analysis

505

Amino Acids

56.84

Weight (kDa)

8.93

Isoelectric Point (pI)

39.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_4 PF13439 96 - 273 1.9e-17 Glycosyltransferase Family 4
Glyco_trans_4_4 PF13579 96 - 270 2.7e-08 Glycosyl transferase 4-like domain
Glycos_transf_1 PF00534 299 - 437 5.5e-19 Glycosyl transferases group 1
Glyco_trans_1_4 PF13692 299 - 434 1.8e-18 Glycosyl transferases group 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014525)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G73160
fragaria_vesca FvH4_3g18700
malus_domestica MD11G1259200.v1.1
prunus_persica Prupe.4G170700_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0031511
rosa_laevigata RLG00000033317 RLG00000033318
rosa_multiflora Rmu_sc0006344.1_g000008 Rmu_sc0009888.1_g000003
rosa_roxburghii Rroxscaffold_1G00048810
rosa_rugosa Rorug05G0126700
rosa_samantha Rh5AG219400 Rh5AG219500 Rh5BG218800 Rh5CG242400 Rh5DG224300
rosa_wichuraiana Rw5G020010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 886, 1500
AccB7I CCANNNNNTGG 2 cut(s) 146, 264
AccBSI CCGCTC 1 cut(s) 1393
AccII CGCG 1 cut(s) 284
AciI CCGC 4 cut(s) 284, 845, 913, 1393
AclWI GGATC 1 cut(s) 769
AcoI YGGCCR 1 cut(s) 266
AcsI RAATTY 4 cut(s) 194, 465, 824, 1235
AcuI CTGAAG 2 cut(s) 351, 1337
AfaI GTAC 3 cut(s) 317, 587, 876
AfeI AGCGCT 1 cut(s) 974
AfiI CCNNNNNNNGG 6 cut(s) 146, 264, 637, 844, 898, 1128
AgsI TTSAA 8 cut(s) 10, 172, 464, 472, 668, 963, 1160, 1475
AjuI GAANNNNNNNTTGG 2 cut(s) 129, 161
AloI GAACNNNNNNTCC 2 cut(s) 686, 718
AluBI AGCT 8 cut(s) 30, 238, 244, 425, 664, 714, 1081, 1292
AluI AGCT 8 cut(s) 30, 238, 244, 425, 664, 714, 1081, 1292
Alw21I GWGCWC 1 cut(s) 510
Alw44I GTGCAC 1 cut(s) 506
AlwI GGATC 1 cut(s) 769
Aor51HI AGCGCT 1 cut(s) 974
AoxI GGCC 4 cut(s) 266, 377, 1039, 1130
ApaLI GTGCAC 1 cut(s) 506
ApeKI GCWGC 4 cut(s) 329, 422, 550, 721
ApoI RAATTY 4 cut(s) 194, 465, 824, 1235
AspLEI GCGC 2 cut(s) 300, 975
AspS9I GGNCC 5 cut(s) 221, 1010, 1040, 1061, 1512
AsuC2I CCSGG 1 cut(s) 981
AsuHPI GGTGA 6 cut(s) 164, 188, 616, 761, 1241, 1245
AsuII TTCGAA 1 cut(s) 231
AsuNHI GCTAGC 1 cut(s) 244
AvaII GGWCC 4 cut(s) 221, 1010, 1061, 1512
BaeGI GKGCMC 1 cut(s) 510
BalI TGGCCA 1 cut(s) 268
BanII GRGCYC 1 cut(s) 654
BbsI GAAGAC 3 cut(s) 244, 346, 1184
Bbv12I GWGCWC 1 cut(s) 510
BbvI GCAGC 4 cut(s) 316, 434, 537, 733
BccI CCATC 5 cut(s) 482, 892, 1295, 1369, 1499
BceAI ACGGC 1 cut(s) 233
BclI TGATCA 1 cut(s) 430
BcnI CCSGG 1 cut(s) 981
BfaI CTAG 5 cut(s) 245, 455, 647, 1058, 1516
BfmI CTRYAG 1 cut(s) 1446
BfoI RGCGCY 2 cut(s) 301, 976
BfuAI ACCTGC 2 cut(s) 886, 1500
BglI GCCNNNNNGGC 2 cut(s) 535, 1138
BisI GCNGC 5 cut(s) 330, 423, 551, 722, 914
BlsI GCNGC 5 cut(s) 331, 424, 552, 723, 915
Bme1390I CCNGG 1 cut(s) 981
Bme18I GGWCC 4 cut(s) 221, 1010, 1061, 1512
BmgT120I GGNCC 5 cut(s) 221, 1010, 1040, 1061, 1512
BmiI GGNNCC 2 cut(s) 857, 1071
BmrFI CCNGG 1 cut(s) 981
BmsI GCATC 4 cut(s) 178, 537, 943, 1388
BmtI GCTAGC 1 cut(s) 248
BpiI GAAGAC 3 cut(s) 244, 346, 1184
Bpu14I TTCGAA 1 cut(s) 231
BpuEI CTTGAG 3 cut(s) 107, 224, 1119
BpuMI CCSGG 1 cut(s) 981
BsaJI CCNNGG 4 cut(s) 200, 680, 979, 1013
BsaXI ACNNNNNCTCC 2 cut(s) 686, 716
Bsc4I CCNNNNNNNGG 6 cut(s) 146, 264, 637, 844, 898, 1128
Bse1I ACTGG 1 cut(s) 269
Bse3DI GCAATG 3 cut(s) 681, 1170, 1429
BseDI CCNNGG 4 cut(s) 200, 680, 979, 1013
BseGI GGATG 2 cut(s) 493, 934
BseLI CCNNNNNNNGG 6 cut(s) 146, 264, 637, 844, 898, 1128
BseMI GCAATG 3 cut(s) 681, 1170, 1429
BseNI ACTGG 1 cut(s) 269
BseRI GAGGAG 2 cut(s) 611, 707
BseSI GKGCMC 1 cut(s) 510
BseXI GCAGC 4 cut(s) 316, 434, 537, 733
BsgI GTGCAG 1 cut(s) 297
Bsh1236I CGCG 1 cut(s) 284
BshFI GGCC 4 cut(s) 268, 379, 1041, 1132
BsiHKAI GWGCWC 1 cut(s) 510
BsiSI CCGG 1 cut(s) 981
BslFI GGGAC 3 cut(s) 401, 653, 938
BslI CCNNNNNNNGG 6 cut(s) 146, 264, 637, 844, 898, 1128
BsmFI GGGAC 3 cut(s) 401, 653, 938
BsmI GAATGC 3 cut(s) 494, 598, 1351
BsnI GGCC 4 cut(s) 268, 379, 1041, 1132
Bsp119I TTCGAA 1 cut(s) 231
Bsp1286I GDGCHC 2 cut(s) 510, 654
Bsp143I GATC 5 cut(s) 178, 430, 774, 1105, 1144
Bsp19I CCATGG 1 cut(s) 200
BspACI CCGC 4 cut(s) 284, 845, 913, 1393
BspANI GGCC 4 cut(s) 268, 379, 1041, 1132
BspFNI CGCG 1 cut(s) 284
BspHI TCATGA 1 cut(s) 340
BspLI GGNNCC 2 cut(s) 857, 1071
BspMI ACCTGC 2 cut(s) 886, 1500
BspOI GCTAGC 1 cut(s) 248
BspPI GGATC 1 cut(s) 769
BspQI GCTCTTC 1 cut(s) 37
BspT104I TTCGAA 1 cut(s) 231
BsrBI CCGCTC 1 cut(s) 1393
BsrDI GCAATG 3 cut(s) 681, 1170, 1429
BsrI ACTGG 1 cut(s) 269
BssECI CCNNGG 4 cut(s) 200, 680, 979, 1013
BssMI GATC 5 cut(s) 178, 430, 774, 1105, 1144
BssT1I CCWWGG 3 cut(s) 200, 680, 1013
Bst4CI ACNGT 3 cut(s) 361, 1183, 1219
Bst6I CTCTTC 2 cut(s) 37, 113
BstAPI GCANNNNNTGC 1 cut(s) 329
BstBI TTCGAA 1 cut(s) 231
BstC8I GCNNGC 3 cut(s) 246, 540, 1336
BstDEI CTNAG 2 cut(s) 182, 1086
BstDSI CCRYGG 1 cut(s) 200
BstEII GGTNACC 1 cut(s) 401
BstF5I GGATG 2 cut(s) 493, 934
BstFNI CGCG 1 cut(s) 284
BstH2I RGCGCY 2 cut(s) 301, 976
BstHHI GCGC 2 cut(s) 300, 975
BstKTI GATC 5 cut(s) 181, 433, 777, 1108, 1147
BstMBI GATC 5 cut(s) 178, 430, 774, 1105, 1144
BstMWI GCNNNNNNNGC 5 cut(s) 329, 535, 981, 1078, 1138
BstNSI RCATGY 2 cut(s) 646, 797
BstPI GGTNACC 1 cut(s) 401
BstSCI CCNGG 1 cut(s) 979
BstSFI CTRYAG 1 cut(s) 1446
BstSLI GKGCMC 1 cut(s) 510
BstUI CGCG 1 cut(s) 284
BstV1I GCAGC 4 cut(s) 316, 434, 537, 733
BstV2I GAAGAC 3 cut(s) 244, 346, 1184
BstX2I RGATCY 1 cut(s) 774
BstYI RGATCY 1 cut(s) 774
BsuRI GGCC 4 cut(s) 268, 379, 1041, 1132
BtgI CCRYGG 1 cut(s) 200
BtsCI GGATG 2 cut(s) 493, 934
BtsI GCAGTG 1 cut(s) 1362
BtsIMutI CAGTG 3 cut(s) 357, 1224, 1362
BveI ACCTGC 2 cut(s) 886, 1500
Cac8I GCNNGC 3 cut(s) 246, 540, 1336
CciI TCATGA 1 cut(s) 340
CfoI GCGC 2 cut(s) 300, 975
Cfr13I GGNCC 5 cut(s) 221, 1010, 1040, 1061, 1512
CseI GACGC 1 cut(s) 290
Csp6I GTAC 3 cut(s) 316, 586, 875
CviQI GTAC 3 cut(s) 316, 586, 875
DdeI CTNAG 2 cut(s) 182, 1086
DpnI GATC 5 cut(s) 180, 432, 776, 1107, 1146
DpnII GATC 5 cut(s) 178, 430, 774, 1105, 1144
EaeI YGGCCR 1 cut(s) 266
Eam1104I CTCTTC 2 cut(s) 37, 113
EarI CTCTTC 2 cut(s) 37, 113
Eco130I CCWWGG 3 cut(s) 200, 680, 1013
Eco147I AGGCCT 2 cut(s) 379, 1132
Eco24I GRGCYC 1 cut(s) 654
Eco47I GGWCC 4 cut(s) 221, 1010, 1061, 1512
Eco47III AGCGCT 1 cut(s) 974
Eco57I CTGAAG 2 cut(s) 351, 1337
Eco91I GGTNACC 1 cut(s) 401
EcoO109I RGGNCCY 2 cut(s) 1010, 1512
EcoO65I GGTNACC 1 cut(s) 401
EcoT14I CCWWGG 3 cut(s) 200, 680, 1013
EcoT22I ATGCAT 2 cut(s) 600, 734
EcoT38I GRGCYC 1 cut(s) 654
ErhI CCWWGG 3 cut(s) 200, 680, 1013
FalI AAGNNNNNCTT 2 cut(s) 390, 422
FaqI GGGAC 3 cut(s) 401, 653, 938
FauI CCCGC 2 cut(s) 277, 838
FbaI TGATCA 1 cut(s) 430
Fnu4HI GCNGC 5 cut(s) 330, 423, 551, 722, 914
FokI GGATG 2 cut(s) 500, 921
FriOI GRGCYC 1 cut(s) 654
Fsp4HI GCNGC 5 cut(s) 330, 423, 551, 722, 914
FspBI CTAG 5 cut(s) 245, 455, 647, 1058, 1516
GlaI GCGC 2 cut(s) 299, 974
GluI GCNGC 5 cut(s) 330, 423, 551, 722, 914
HaeII RGCGCY 2 cut(s) 301, 976
HaeIII GGCC 4 cut(s) 268, 379, 1041, 1132
HapII CCGG 1 cut(s) 981
HgaI GACGC 1 cut(s) 290
HhaI GCGC 2 cut(s) 300, 975
Hin6I GCGC 2 cut(s) 298, 973
HinP1I GCGC 2 cut(s) 298, 973
HincII GTYRAC 1 cut(s) 763
HindII GTYRAC 1 cut(s) 763
HinfI GANTC 5 cut(s) 60, 82, 346, 697, 1286
HpaII CCGG 1 cut(s) 981
HphI GGTGA 6 cut(s) 164, 188, 616, 761, 1241, 1245
Hpy166II GTNNAC 5 cut(s) 508, 763, 875, 1117, 1362
Hpy188I TCNGA 5 cut(s) 370, 487, 774, 860, 1485
Hpy188III TCNNGA 5 cut(s) 124, 341, 668, 1103, 1213
Hpy8I GTNNAC 5 cut(s) 508, 763, 875, 1117, 1362
HpyAV CCTTC 6 cut(s) 234, 375, 392, 416, 1017, 1045
HpyCH4III ACNGT 3 cut(s) 361, 1183, 1219
HpyF10VI GCNNNNNNNGC 5 cut(s) 329, 535, 981, 1078, 1138
HpyF3I CTNAG 2 cut(s) 182, 1086
HspAI GCGC 2 cut(s) 298, 973
Ksp22I TGATCA 1 cut(s) 430
Kzo9I GATC 5 cut(s) 178, 430, 774, 1105, 1144
LguI GCTCTTC 1 cut(s) 37
LmnI GCTCC 3 cut(s) 295, 1069, 1078
Lsp1109I GCAGC 4 cut(s) 316, 434, 537, 733
LweI GCATC 4 cut(s) 178, 537, 943, 1388
MaeI CTAG 5 cut(s) 245, 455, 647, 1058, 1516
MaeIII GTNAC 3 cut(s) 401, 565, 606
MalI GATC 5 cut(s) 180, 432, 776, 1107, 1146
MbiI CCGCTC 1 cut(s) 1393
MboI GATC 5 cut(s) 178, 430, 774, 1105, 1144
MfeI CAATTG 1 cut(s) 963
MflI RGATCY 1 cut(s) 774
MhlI GDGCHC 2 cut(s) 510, 654
MlsI TGGCCA 1 cut(s) 268
MluCI AATT 8 cut(s) 167, 194, 445, 465, 824, 963, 1034, 1235
MluNI TGGCCA 1 cut(s) 268
MlyI GAGTC 1 cut(s) 1295
MmeI TCCRAC 3 cut(s) 66, 465, 883
Mox20I TGGCCA 1 cut(s) 268
Mph1103I ATGCAT 2 cut(s) 600, 734
MscI TGGCCA 1 cut(s) 268
MseI TTAA 4 cut(s) 444, 480, 708, 804
Msp20I TGGCCA 1 cut(s) 268
MspI CCGG 1 cut(s) 981
MspR9I CCNGG 1 cut(s) 981
MunI CAATTG 1 cut(s) 963
Mva1269I GAATGC 3 cut(s) 494, 598, 1351
MvnI CGCG 1 cut(s) 284
MwoI GCNNNNNNNGC 5 cut(s) 329, 535, 981, 1078, 1138
NciI CCSGG 1 cut(s) 981
NcoI CCATGG 1 cut(s) 200
NdeII GATC 5 cut(s) 178, 430, 774, 1105, 1144
NheI GCTAGC 1 cut(s) 244
NlaIV GGNNCC 2 cut(s) 857, 1071
NmeAIII GCCGAG 1 cut(s) 1460
NmuCI GTSAC 1 cut(s) 565
NsiI ATGCAT 2 cut(s) 600, 734
NspI RCATGY 2 cut(s) 646, 797
NspV TTCGAA 1 cut(s) 231
PagI TCATGA 1 cut(s) 340
PceI AGGCCT 2 cut(s) 379, 1132
PciSI GCTCTTC 1 cut(s) 37
PctI GAATGC 3 cut(s) 494, 598, 1351
PfeI GAWTC 4 cut(s) 60, 82, 346, 697
PflMI CCANNNNNTGG 2 cut(s) 146, 264
PkrI GCNGC 5 cut(s) 331, 424, 552, 723, 915
PleI GAGTC 1 cut(s) 1294
PpsI GAGTC 1 cut(s) 1294
PpuMI RGGWCCY 2 cut(s) 1010, 1512
Psp5II RGGWCCY 2 cut(s) 1010, 1512
PspEI GGTNACC 1 cut(s) 401
PspN4I GGNNCC 2 cut(s) 857, 1071
PspPI GGNCC 5 cut(s) 221, 1010, 1040, 1061, 1512
PspPPI RGGWCCY 2 cut(s) 1010, 1512
PsrI GAACNNNNNNTAC 2 cut(s) 1406, 1438
PsuI RGATCY 1 cut(s) 774
RsaI GTAC 3 cut(s) 317, 587, 876
RsaNI GTAC 3 cut(s) 316, 586, 875
SapI GCTCTTC 1 cut(s) 37
SaqAI TTAA 4 cut(s) 444, 480, 708, 804
SatI GCNGC 5 cut(s) 330, 423, 551, 722, 914
Sau3AI GATC 5 cut(s) 178, 430, 774, 1105, 1144
Sau96I GGNCC 5 cut(s) 221, 1010, 1040, 1061, 1512
SchI GAGTC 1 cut(s) 1295
ScrFI CCNGG 1 cut(s) 981
SduI GDGCHC 2 cut(s) 510, 654
SfaNI GCATC 4 cut(s) 178, 537, 943, 1388
SfcI CTRYAG 1 cut(s) 1446
SfuI TTCGAA 1 cut(s) 231
SinI GGWCC 4 cut(s) 221, 1010, 1061, 1512
SmlI CTYRAG 3 cut(s) 122, 239, 1134
SmoI CTYRAG 3 cut(s) 122, 239, 1134
Sse9I AATT 8 cut(s) 167, 194, 445, 465, 824, 963, 1034, 1235
SseBI AGGCCT 2 cut(s) 379, 1132
SsiI CCGC 4 cut(s) 284, 845, 913, 1393
SspMI CTAG 5 cut(s) 245, 455, 647, 1058, 1516
StuI AGGCCT 2 cut(s) 379, 1132
StyD4I CCNGG 1 cut(s) 979
StyI CCWWGG 3 cut(s) 200, 680, 1013
TaaI ACNGT 3 cut(s) 361, 1183, 1219
TaqI TCGA 3 cut(s) 231, 498, 1355
TaqII GACCGA 1 cut(s) 209
TasI AATT 8 cut(s) 167, 194, 445, 465, 824, 963, 1034, 1235
TauI GCSGC 1 cut(s) 916
TfiI GAWTC 4 cut(s) 60, 82, 346, 697
Tru1I TTAA 4 cut(s) 444, 480, 708, 804
Tru9I TTAA 4 cut(s) 444, 480, 708, 804
TscAI CASTG 3 cut(s) 364, 1224, 1369
TseFI GTSAC 1 cut(s) 565
TseI GCWGC 4 cut(s) 329, 422, 550, 721
Tsp45I GTSAC 1 cut(s) 565
TspDTI ATGAA 7 cut(s) 24, 37, 105, 338, 398, 411, 1424
TspRI CASTG 3 cut(s) 364, 1224, 1369
Van91I CCANNNNNTGG 2 cut(s) 146, 264
VneI GTGCAC 1 cut(s) 506
VpaK11BI GGWCC 4 cut(s) 221, 1010, 1061, 1512
XapI RAATTY 4 cut(s) 194, 465, 824, 1235
XceI RCATGY 2 cut(s) 646, 797
XspI CTAG 5 cut(s) 245, 455, 647, 1058, 1516
Zsp2I ATGCAT 2 cut(s) 600, 734
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.