Rh5CG242400

Glycosyl transferases group 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0014525
Physical Location & Seq
Forward (+)
25150444 .. 25151850
1407 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG242400.1

Sequence Viewer

Length: 1407 bp
ATGCCTATTAGATTCTCAACCATTCTCACTTTGATTCTACTCTTTACTTCCTTTTTCCTCTTCCTTTCATCACTCAAGAACACCCAAGAACCATTTTTTGGGGGTGATGAGAACACTCAATTCAATGGTGATCTTAGAGATGCTAAATTCCCATGGAACAAACTCTGTTTCGGTCCTTCTTTCGAAAAGCTCAAGCTCGCCGTCTTCTCCAAAACATGGCCAGTTGGTGCAGACGCGGGTGGTATGGAGCGCCATGCTTCCACATTGTACCAAGCACTTGCTGCAAAGGGTCATGAGATTCATGTCTTCACTGTACCTTCAGATAGGAGGCCTCATTGGGACATACATCAAGGTAACCTTCATGTTTACTTTGCAGCTAATGATCATGGCTCTGTTAATTGTTCTCTAGCGTTTGAAATTTTCAATAAAGTTAACTCGGATGGGGCATTCGATTATGTGCACACCGAGAGTGTTTCGTTGCCTTATTGGCGTGCGAAGATGCTGCCTAATGTGGCTGTCACTTGGCATGGGATATGGTACGAAATAATGCATTCCAAGTTACTGCAACAACTCCTCACCGACCCAAATGGGGATATGCTAGAGCCCATGACAGAGCTTCAAGAAGCAATGCCAAGGCTCGTTGAGGAGATTCGGTTCTTTAAGAGATATACGCAGCATATATGCATAAGCAATAGTGCTGGTGAGGTTCTGGTCAACATCTATCAGATCCCACAGAGAAATGTGCATGTTATACTTAATGGCGTTGATGAGAAAGAATTTGTGCCAGACCAAGAAGCGGGTGCAAGGTTCCGAGAAAAACACGGTGTACCTGCCAATGTGAGCCTTGTGATGGGAGTGGCAGGGCGGCTGGTTAGGGACAAAGGGCATCCACTTCTTTACAAAGCCTTTTCTTCAATTGTGAAGCGCTACCCCGGCGTGTTTTTGCTTGTGGCAGGGTCAGGTCCTTGGAGAAGAAGGTATGCTGAATTAGGCCCAAATGTGAAGGTTCTAGGACCATTGGAGCCATTGGAGCTGTCTAAGTTTTACAATGCTCTTGATCTGTTTGTGAACCCCACATTGAGACCCCAAGGGCTTGATCTAACATTGATTGAAGCAATGCAAAGTGGGAAGACAGTTCTAACTCCAAACTATCCAAGCATTGTTAGGACAGTGGTGGTGGGTGAAGAATTTGGATACACTTTTTCACCCAATGTCAAGTCTTTTGTTGAGGCTTTGGAGTCAGCCATAAAAGATGGGTCTAATGTGCTGAAGAAGAAAGGGGTGGCTTGCAAAAACTATGTGCATTCGATGTTCACTGCAACCAAGATGGCATCGGCTTATGAGCGGTTCTTTCTGTGCATGAAGAACCCAAAATACTGTCAATACCCTCTTTCCACTGATTGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glyco_trans_1_4 Glyco_transf_4 Glycos_transf_1

Protein Analysis

468

Amino Acids

52.83

Weight (kDa)

8.5

Isoelectric Point (pI)

37.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_4 PF13439 80 - 257 1.9e-17 Glycosyltransferase Family 4
Glyco_trans_4_4 PF13579 80 - 254 6.8e-09 Glycosyl transferase 4-like domain
Glycos_transf_1 PF00534 283 - 419 7.8e-19 Glycosyl transferases group 1
Glyco_trans_1_4 PF13692 283 - 418 1.5e-18 Glycosyl transferases group 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014525)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G73160
fragaria_vesca FvH4_3g18700
malus_domestica MD11G1259200.v1.1
prunus_persica Prupe.4G170700_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0031511
rosa_laevigata RLG00000033317 RLG00000033318
rosa_multiflora Rmu_sc0006344.1_g000008 Rmu_sc0009888.1_g000003
rosa_roxburghii Rroxscaffold_1G00048810
rosa_rugosa Rorug05G0126700
rosa_samantha Rh5AG219400 Rh5AG219500 Rh5BG218800 Rh5CG242400 Rh5DG224300
rosa_wichuraiana Rw5G020010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 838
AccB7I CCANNNNNTGG 2 cut(s) 98, 216
AccBSI CCGCTC 1 cut(s) 1345
AccII CGCG 1 cut(s) 236
AciI CCGC 4 cut(s) 236, 797, 865, 1345
AclWI GGATC 1 cut(s) 721
AcoI YGGCCR 1 cut(s) 218
AcsI RAATTY 4 cut(s) 146, 417, 776, 1187
AcuI CTGAAG 2 cut(s) 303, 1289
AfaI GTAC 4 cut(s) 269, 315, 539, 828
AfeI AGCGCT 1 cut(s) 926
AfiI CCNNNNNNNGG 5 cut(s) 98, 216, 589, 796, 850
AgsI TTSAA 6 cut(s) 124, 416, 424, 620, 915, 1112
AjuI GAANNNNNNNTTGG 2 cut(s) 81, 113
AloI GAACNNNNNNTCC 2 cut(s) 638, 670
AluBI AGCT 5 cut(s) 190, 196, 377, 616, 1033
AluI AGCT 5 cut(s) 190, 196, 377, 616, 1033
Alw21I GWGCWC 1 cut(s) 462
Alw26I GTCTC 1 cut(s) 1075
Alw44I GTGCAC 1 cut(s) 458
AlwI GGATC 1 cut(s) 721
Aor51HI AGCGCT 1 cut(s) 926
AoxI GGCC 3 cut(s) 218, 329, 991
ApaLI GTGCAC 1 cut(s) 458
ApeKI GCWGC 4 cut(s) 281, 374, 502, 673
ApoI RAATTY 4 cut(s) 146, 417, 776, 1187
AspLEI GCGC 2 cut(s) 252, 927
AspS9I GGNCC 4 cut(s) 173, 962, 992, 1013
AsuC2I CCSGG 1 cut(s) 933
AsuHPI GGTGA 6 cut(s) 116, 140, 568, 713, 1193, 1197
AsuII TTCGAA 1 cut(s) 183
AvaII GGWCC 3 cut(s) 173, 962, 1013
BaeGI GKGCMC 1 cut(s) 462
BalI TGGCCA 1 cut(s) 220
BanII GRGCYC 1 cut(s) 606
BbsI GAAGAC 3 cut(s) 196, 298, 1136
Bbv12I GWGCWC 1 cut(s) 462
BbvI GCAGC 4 cut(s) 268, 386, 489, 685
BccI CCATC 4 cut(s) 434, 844, 1247, 1321
BceAI ACGGC 1 cut(s) 185
BcgI CGANNNNNNTGC 2 cut(s) 484, 518
BciVI GTATCC 1 cut(s) 1187
BclI TGATCA 1 cut(s) 382
BcnI CCSGG 1 cut(s) 933
BcoDI GTCTC 1 cut(s) 1075
BfaI CTAG 3 cut(s) 407, 599, 1010
BfoI RGCGCY 2 cut(s) 253, 928
BfuAI ACCTGC 1 cut(s) 838
BfuI GTATCC 1 cut(s) 1187
BglI GCCNNNNNGGC 1 cut(s) 487
BisI GCNGC 5 cut(s) 282, 375, 503, 674, 866
BlsI GCNGC 5 cut(s) 283, 376, 504, 675, 867
Bme1390I CCNGG 1 cut(s) 933
Bme18I GGWCC 3 cut(s) 173, 962, 1013
BmgT120I GGNCC 4 cut(s) 173, 962, 992, 1013
BmiI GGNNCC 2 cut(s) 809, 1023
BmrFI CCNGG 1 cut(s) 933
BmsI GCATC 4 cut(s) 130, 489, 895, 1340
BpiI GAAGAC 3 cut(s) 196, 298, 1136
Bpu14I TTCGAA 1 cut(s) 183
BpuEI CTTGAG 2 cut(s) 59, 176
BpuMI CCSGG 1 cut(s) 933
BsaI GGTCTC 1 cut(s) 1075
BsaJI CCNNGG 5 cut(s) 152, 632, 931, 965, 1087
BsaXI ACNNNNNCTCC 2 cut(s) 638, 668
Bsc4I CCNNNNNNNGG 5 cut(s) 98, 216, 589, 796, 850
Bse1I ACTGG 1 cut(s) 221
Bse3DI GCAATG 2 cut(s) 633, 1122
BseDI CCNNGG 5 cut(s) 152, 632, 931, 965, 1087
BseGI GGATG 2 cut(s) 445, 886
BseLI CCNNNNNNNGG 5 cut(s) 98, 216, 589, 796, 850
BseMI GCAATG 2 cut(s) 633, 1122
BseNI ACTGG 1 cut(s) 221
BseRI GAGGAG 2 cut(s) 563, 659
BseSI GKGCMC 1 cut(s) 462
BseXI GCAGC 4 cut(s) 268, 386, 489, 685
BsgI GTGCAG 1 cut(s) 249
Bsh1236I CGCG 1 cut(s) 236
BshFI GGCC 3 cut(s) 220, 331, 993
BsiHKAI GWGCWC 1 cut(s) 462
BsiSI CCGG 1 cut(s) 933
BslFI GGGAC 2 cut(s) 353, 890
BslI CCNNNNNNNGG 5 cut(s) 98, 216, 589, 796, 850
BsmAI GTCTC 1 cut(s) 1075
BsmFI GGGAC 2 cut(s) 353, 890
BsmI GAATGC 3 cut(s) 446, 550, 1303
BsnI GGCC 3 cut(s) 220, 331, 993
Bso31I GGTCTC 1 cut(s) 1075
Bsp119I TTCGAA 1 cut(s) 183
Bsp1286I GDGCHC 2 cut(s) 462, 606
Bsp143I GATC 5 cut(s) 130, 382, 726, 1057, 1096
Bsp19I CCATGG 1 cut(s) 152
BspACI CCGC 4 cut(s) 236, 797, 865, 1345
BspANI GGCC 3 cut(s) 220, 331, 993
BspFNI CGCG 1 cut(s) 236
BspHI TCATGA 1 cut(s) 292
BspLI GGNNCC 2 cut(s) 809, 1023
BspMI ACCTGC 1 cut(s) 838
BspPI GGATC 1 cut(s) 721
BspT104I TTCGAA 1 cut(s) 183
BspTNI GGTCTC 1 cut(s) 1075
BsrBI CCGCTC 1 cut(s) 1345
BsrDI GCAATG 2 cut(s) 633, 1122
BsrI ACTGG 1 cut(s) 221
BssECI CCNNGG 5 cut(s) 152, 632, 931, 965, 1087
BssMI GATC 5 cut(s) 130, 382, 726, 1057, 1096
BssT1I CCWWGG 4 cut(s) 152, 632, 965, 1087
Bst4CI ACNGT 5 cut(s) 313, 824, 1135, 1171, 1379
Bst6I CTCTTC 1 cut(s) 65
BstAPI GCANNNNNTGC 1 cut(s) 281
BstBI TTCGAA 1 cut(s) 183
BstC8I GCNNGC 3 cut(s) 198, 492, 1288
BstDEI CTNAG 2 cut(s) 134, 1038
BstDSI CCRYGG 1 cut(s) 152
BstEII GGTNACC 1 cut(s) 353
BstF5I GGATG 2 cut(s) 445, 886
BstFNI CGCG 1 cut(s) 236
BstH2I RGCGCY 2 cut(s) 253, 928
BstHHI GCGC 2 cut(s) 252, 927
BstKTI GATC 5 cut(s) 133, 385, 729, 1060, 1099
BstMAI GTCTC 1 cut(s) 1075
BstMBI GATC 5 cut(s) 130, 382, 726, 1057, 1096
BstMWI GCNNNNNNNGC 4 cut(s) 281, 487, 933, 1030
BstNSI RCATGY 1 cut(s) 749
BstPI GGTNACC 1 cut(s) 353
BstSCI CCNGG 1 cut(s) 931
BstSLI GKGCMC 1 cut(s) 462
BstUI CGCG 1 cut(s) 236
BstV1I GCAGC 4 cut(s) 268, 386, 489, 685
BstV2I GAAGAC 3 cut(s) 196, 298, 1136
BstX2I RGATCY 1 cut(s) 726
BstYI RGATCY 1 cut(s) 726
BsuI GTATCC 1 cut(s) 1187
BsuRI GGCC 3 cut(s) 220, 331, 993
BtgI CCRYGG 1 cut(s) 152
BtsCI GGATG 2 cut(s) 445, 886
BtsI GCAGTG 1 cut(s) 1314
BtsIMutI CAGTG 4 cut(s) 309, 1176, 1314, 1395
BveI ACCTGC 1 cut(s) 838
Cac8I GCNNGC 3 cut(s) 198, 492, 1288
CciI TCATGA 1 cut(s) 292
CfoI GCGC 2 cut(s) 252, 927
Cfr13I GGNCC 4 cut(s) 173, 962, 992, 1013
CseI GACGC 1 cut(s) 242
Csp6I GTAC 4 cut(s) 268, 314, 538, 827
CviQI GTAC 4 cut(s) 268, 314, 538, 827
DdeI CTNAG 2 cut(s) 134, 1038
DpnI GATC 5 cut(s) 132, 384, 728, 1059, 1098
DpnII GATC 5 cut(s) 130, 382, 726, 1057, 1096
EaeI YGGCCR 1 cut(s) 218
Eam1104I CTCTTC 1 cut(s) 65
EarI CTCTTC 1 cut(s) 65
Eco130I CCWWGG 4 cut(s) 152, 632, 965, 1087
Eco147I AGGCCT 1 cut(s) 331
Eco24I GRGCYC 1 cut(s) 606
Eco31I GGTCTC 1 cut(s) 1075
Eco47I GGWCC 3 cut(s) 173, 962, 1013
Eco47III AGCGCT 1 cut(s) 926
Eco57I CTGAAG 2 cut(s) 303, 1289
Eco91I GGTNACC 1 cut(s) 353
EcoO109I RGGNCCY 1 cut(s) 962
EcoO65I GGTNACC 1 cut(s) 353
EcoT14I CCWWGG 4 cut(s) 152, 632, 965, 1087
EcoT22I ATGCAT 2 cut(s) 552, 686
EcoT38I GRGCYC 1 cut(s) 606
ErhI CCWWGG 4 cut(s) 152, 632, 965, 1087
FalI AAGNNNNNCTT 2 cut(s) 342, 374
FaqI GGGAC 2 cut(s) 353, 890
FauI CCCGC 2 cut(s) 229, 790
FbaI TGATCA 1 cut(s) 382
Fnu4HI GCNGC 5 cut(s) 282, 375, 503, 674, 866
FokI GGATG 2 cut(s) 452, 873
FriOI GRGCYC 1 cut(s) 606
Fsp4HI GCNGC 5 cut(s) 282, 375, 503, 674, 866
FspBI CTAG 3 cut(s) 407, 599, 1010
GlaI GCGC 2 cut(s) 251, 926
GluI GCNGC 5 cut(s) 282, 375, 503, 674, 866
HaeII RGCGCY 2 cut(s) 253, 928
HaeIII GGCC 3 cut(s) 220, 331, 993
HapII CCGG 1 cut(s) 933
HgaI GACGC 1 cut(s) 242
HhaI GCGC 2 cut(s) 252, 927
Hin6I GCGC 2 cut(s) 250, 925
HinP1I GCGC 2 cut(s) 250, 925
HincII GTYRAC 2 cut(s) 433, 715
HindII GTYRAC 2 cut(s) 433, 715
HinfI GANTC 5 cut(s) 12, 34, 298, 649, 1238
HpaI GTTAAC 1 cut(s) 433
HpaII CCGG 1 cut(s) 933
HphI GGTGA 6 cut(s) 116, 140, 568, 713, 1193, 1197
Hpy166II GTNNAC 7 cut(s) 367, 433, 460, 715, 827, 1069, 1314
Hpy188I TCNGA 4 cut(s) 322, 439, 726, 812
Hpy188III TCNNGA 4 cut(s) 76, 293, 620, 1055
Hpy8I GTNNAC 7 cut(s) 367, 433, 460, 715, 827, 1069, 1314
HpyAV CCTTC 5 cut(s) 186, 327, 368, 969, 997
HpyCH4III ACNGT 5 cut(s) 313, 824, 1135, 1171, 1379
HpyF10VI GCNNNNNNNGC 4 cut(s) 281, 487, 933, 1030
HpyF3I CTNAG 2 cut(s) 134, 1038
HspAI GCGC 2 cut(s) 250, 925
Ksp22I TGATCA 1 cut(s) 382
KspAI GTTAAC 1 cut(s) 433
Kzo9I GATC 5 cut(s) 130, 382, 726, 1057, 1096
LmnI GCTCC 3 cut(s) 247, 1021, 1030
Lsp1109I GCAGC 4 cut(s) 268, 386, 489, 685
LweI GCATC 4 cut(s) 130, 489, 895, 1340
MaeI CTAG 3 cut(s) 407, 599, 1010
MaeIII GTNAC 3 cut(s) 353, 517, 558
MalI GATC 5 cut(s) 132, 384, 728, 1059, 1098
MbiI CCGCTC 1 cut(s) 1345
MboI GATC 5 cut(s) 130, 382, 726, 1057, 1096
MfeI CAATTG 1 cut(s) 915
MflI RGATCY 1 cut(s) 726
MhlI GDGCHC 2 cut(s) 462, 606
MlsI TGGCCA 1 cut(s) 220
MluCI AATT 8 cut(s) 119, 146, 397, 417, 776, 915, 986, 1187
MluNI TGGCCA 1 cut(s) 220
MlyI GAGTC 1 cut(s) 1247
MnlI CCTC 8 cut(s) 68, 321, 342, 584, 637, 697, 1222, 1398
Mox20I TGGCCA 1 cut(s) 220
Mph1103I ATGCAT 2 cut(s) 552, 686
MscI TGGCCA 1 cut(s) 220
MseI TTAA 4 cut(s) 396, 432, 660, 756
Msp20I TGGCCA 1 cut(s) 220
MspI CCGG 1 cut(s) 933
MspR9I CCNGG 1 cut(s) 933
MunI CAATTG 1 cut(s) 915
Mva1269I GAATGC 3 cut(s) 446, 550, 1303
MvnI CGCG 1 cut(s) 236
MwoI GCNNNNNNNGC 4 cut(s) 281, 487, 933, 1030
NciI CCSGG 1 cut(s) 933
NcoI CCATGG 1 cut(s) 152
NdeII GATC 5 cut(s) 130, 382, 726, 1057, 1096
NlaIV GGNNCC 2 cut(s) 809, 1023
NmuCI GTSAC 1 cut(s) 517
NsiI ATGCAT 2 cut(s) 552, 686
NspI RCATGY 1 cut(s) 749
NspV TTCGAA 1 cut(s) 183
PagI TCATGA 1 cut(s) 292
PceI AGGCCT 1 cut(s) 331
PctI GAATGC 3 cut(s) 446, 550, 1303
PfeI GAWTC 4 cut(s) 12, 34, 298, 649
PflMI CCANNNNNTGG 2 cut(s) 98, 216
PkrI GCNGC 5 cut(s) 283, 376, 504, 675, 867
PleI GAGTC 1 cut(s) 1246
PpsI GAGTC 1 cut(s) 1246
PpuMI RGGWCCY 1 cut(s) 962
Psp5II RGGWCCY 1 cut(s) 962
PspEI GGTNACC 1 cut(s) 353
PspN4I GGNNCC 2 cut(s) 809, 1023
PspPI GGNCC 4 cut(s) 173, 962, 992, 1013
PspPPI RGGWCCY 1 cut(s) 962
PsrI GAACNNNNNNTAC 2 cut(s) 1358, 1390
PsuI RGATCY 1 cut(s) 726
RsaI GTAC 4 cut(s) 269, 315, 539, 828
RsaNI GTAC 4 cut(s) 268, 314, 538, 827
SaqAI TTAA 4 cut(s) 396, 432, 660, 756
SatI GCNGC 5 cut(s) 282, 375, 503, 674, 866
Sau3AI GATC 5 cut(s) 130, 382, 726, 1057, 1096
Sau96I GGNCC 4 cut(s) 173, 962, 992, 1013
SchI GAGTC 1 cut(s) 1247
ScrFI CCNGG 1 cut(s) 933
SduI GDGCHC 2 cut(s) 462, 606
SfaNI GCATC 4 cut(s) 130, 489, 895, 1340
SfuI TTCGAA 1 cut(s) 183
SinI GGWCC 3 cut(s) 173, 962, 1013
SmlI CTYRAG 2 cut(s) 74, 191
SmoI CTYRAG 2 cut(s) 74, 191
Sse9I AATT 8 cut(s) 119, 146, 397, 417, 776, 915, 986, 1187
SseBI AGGCCT 1 cut(s) 331
SsiI CCGC 4 cut(s) 236, 797, 865, 1345
SspMI CTAG 3 cut(s) 407, 599, 1010
StuI AGGCCT 1 cut(s) 331
StyD4I CCNGG 1 cut(s) 931
StyI CCWWGG 4 cut(s) 152, 632, 965, 1087
TaaI ACNGT 5 cut(s) 313, 824, 1135, 1171, 1379
TaqI TCGA 3 cut(s) 183, 450, 1307
TaqII GACCGA 1 cut(s) 161
TasI AATT 8 cut(s) 119, 146, 397, 417, 776, 915, 986, 1187
TauI GCSGC 1 cut(s) 868
TfiI GAWTC 4 cut(s) 12, 34, 298, 649
Tru1I TTAA 4 cut(s) 396, 432, 660, 756
Tru9I TTAA 4 cut(s) 396, 432, 660, 756
TscAI CASTG 4 cut(s) 316, 1176, 1321, 1402
TseFI GTSAC 1 cut(s) 517
TseI GCWGC 4 cut(s) 281, 374, 502, 673
Tsp45I GTSAC 1 cut(s) 517
TspDTI ATGAA 4 cut(s) 57, 290, 350, 1376
TspRI CASTG 4 cut(s) 316, 1176, 1321, 1402
Van91I CCANNNNNTGG 2 cut(s) 98, 216
VneI GTGCAC 1 cut(s) 458
VpaK11BI GGWCC 3 cut(s) 173, 962, 1013
XapI RAATTY 4 cut(s) 146, 417, 776, 1187
XceI RCATGY 1 cut(s) 749
XspI CTAG 3 cut(s) 407, 599, 1010
Zsp2I ATGCAT 2 cut(s) 552, 686
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.