RLG00000033318

Glycosyl transferases group 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0014525
Physical Location & Seq
Forward (+)
25621758 .. 25622632
875 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000033318

Sequence Viewer

Length: 783 bp
ATGCACTCCAAGTTACTGCAACAACTCCTCACCGACCCAAATGGGGATATGCTAGAGCCCATGACAGAGCTTCAAGAAGCAATGCCAAGGCTCGTTGAGGAGATTCGGTTCTTTAAGAGCTATACGCAGCATATATGCATAAGCAATAGTGCTGGTGAGGTTCTGGTCAACATCTATCAGATCCCACAGACAAATGTGCATGTCATACTTAATGGCGTTGATGAGACAAAATTTCTGCCAGACCAAGAAGCGGGTGCAAGGGACAAAGGGCATCCACTTCTTTACAAAGCCTTTTCTTCAATTGTGAAGCGCTACCCTGGCGTGTTTTTGCTTGTGGCAGGGTCAGGTCCTTGGAGAAGAAGGTATGCTGAATTAGGCCCAAATGTGAAGGTTCTAGGACCATTGGAGCTGTCTAAGTTTTACAATGCTCTTGATCTGTTTGTGAACCCCACATTGAGGCCCCAAGGGCTTGATCTAACATTGATTGAAGCAATGCAAAGTGGGAAGACAGTTCTAACTCCAAACTATCCAAGCATTGTTGGGACAGTGGTGGTGGGTGAAGAATTTGGATACACTTTTTCACCCAATGTCAAGTCTTTTGTTCAGGCTTTGGAGTCGGCGATAAAAGATGAGTCTAATGTGCTAAAGAAGAAAGGGGTGGCTTGCAAAAACTATGTGCATTCGATGTTCACTGCAACTAAGATGGCATCGGCTTATGAGCGGTTCTTTCTGTGCATGAAGAACCCAAAATACTGTCAGTACCCTCTTTCCACTGATTGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glyco_trans_1_4 Glyco_transf_4 Glycos_transf_1

Protein Analysis

261

Amino Acids

29.15

Weight (kDa)

8.18

Isoelectric Point (pI)

40.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glycos_transf_1 PF00534 87 - 213 2.9e-15 Glycosyl transferases group 1
Glyco_trans_1_4 PF13692 88 - 210 5.2e-17 Glycosyl transferases group 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014525)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G73160
fragaria_vesca FvH4_3g18700
malus_domestica MD11G1259200.v1.1
prunus_persica Prupe.4G170700_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0031511
rosa_laevigata RLG00000033317 RLG00000033318
rosa_multiflora Rmu_sc0006344.1_g000008 Rmu_sc0009888.1_g000003
rosa_roxburghii Rroxscaffold_1G00048810
rosa_rugosa Rorug05G0126700
rosa_samantha Rh5AG219400 Rh5AG219500 Rh5BG218800 Rh5CG242400 Rh5DG224300
rosa_wichuraiana Rw5G020010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 721
AciI CCGC 2 cut(s) 251, 721
AclWI GGATC 1 cut(s) 175
AcsI RAATTY 2 cut(s) 230, 563
AfaI GTAC 1 cut(s) 761
AfeI AGCGCT 1 cut(s) 311
AfiI CCNNNNNNNGG 3 cut(s) 43, 250, 456
AgsI TTSAA 3 cut(s) 74, 300, 488
AjnI CCWGG 1 cut(s) 316
AloI GAACNNNNNNTCC 2 cut(s) 92, 124
AluBI AGCT 3 cut(s) 70, 120, 409
AluI AGCT 3 cut(s) 70, 120, 409
Alw26I GTCTC 1 cut(s) 218
AlwI GGATC 1 cut(s) 175
Aor51HI AGCGCT 1 cut(s) 311
AoxI GGCC 2 cut(s) 376, 458
ApeKI GCWGC 1 cut(s) 127
ApoI RAATTY 2 cut(s) 230, 563
AspLEI GCGC 1 cut(s) 312
AspS9I GGNCC 4 cut(s) 347, 377, 398, 459
AsuHPI GGTGA 4 cut(s) 22, 167, 569, 573
AvaII GGWCC 2 cut(s) 347, 398
BanII GRGCYC 1 cut(s) 60
BbsI GAAGAC 1 cut(s) 512
BbvI GCAGC 1 cut(s) 139
BccI CCATC 1 cut(s) 697
BciT130I CCWGG 1 cut(s) 318
BciVI GTATCC 1 cut(s) 563
BcoDI GTCTC 1 cut(s) 218
BfaI CTAG 2 cut(s) 53, 395
BfoI RGCGCY 1 cut(s) 313
BfuI GTATCC 1 cut(s) 563
BglI GCCNNNNNGGC 1 cut(s) 466
BisI GCNGC 1 cut(s) 128
BlsI GCNGC 1 cut(s) 129
Bme1390I CCNGG 1 cut(s) 318
Bme18I GGWCC 2 cut(s) 347, 398
BmgT120I GGNCC 4 cut(s) 347, 377, 398, 459
BmiI GGNNCC 1 cut(s) 461
BmrFI CCNGG 1 cut(s) 318
BmsI GCATC 2 cut(s) 280, 716
BpiI GAAGAC 1 cut(s) 512
BsaJI CCNNGG 4 cut(s) 86, 316, 350, 463
BsaXI ACNNNNNCTCC 2 cut(s) 92, 122
Bsc4I CCNNNNNNNGG 3 cut(s) 43, 250, 456
Bse3DI GCAATG 2 cut(s) 87, 498
BseBI CCWGG 1 cut(s) 318
BseDI CCNNGG 4 cut(s) 86, 316, 350, 463
BseGI GGATG 1 cut(s) 271
BseLI CCNNNNNNNGG 3 cut(s) 43, 250, 456
BseMI GCAATG 2 cut(s) 87, 498
BseRI GAGGAG 2 cut(s) 17, 113
BseXI GCAGC 1 cut(s) 139
BshFI GGCC 2 cut(s) 378, 460
BslFI GGGAC 2 cut(s) 275, 556
BslI CCNNNNNNNGG 3 cut(s) 43, 250, 456
BsmAI GTCTC 1 cut(s) 218
BsmFI GGGAC 2 cut(s) 275, 556
BsmI GAATGC 1 cut(s) 679
BsnI GGCC 2 cut(s) 378, 460
Bsp1286I GDGCHC 1 cut(s) 60
Bsp143I GATC 3 cut(s) 180, 433, 472
BspACI CCGC 2 cut(s) 251, 721
BspANI GGCC 2 cut(s) 378, 460
BspLI GGNNCC 1 cut(s) 461
BspPI GGATC 1 cut(s) 175
BsrBI CCGCTC 1 cut(s) 721
BsrDI GCAATG 2 cut(s) 87, 498
BssECI CCNNGG 4 cut(s) 86, 316, 350, 463
BssMI GATC 3 cut(s) 180, 433, 472
BssT1I CCWWGG 3 cut(s) 86, 350, 463
Bst2UI CCWGG 1 cut(s) 318
Bst4CI ACNGT 3 cut(s) 511, 547, 755
BstC8I GCNNGC 1 cut(s) 664
BstDEI CTNAG 2 cut(s) 414, 699
BstF5I GGATG 1 cut(s) 271
BstH2I RGCGCY 1 cut(s) 313
BstHHI GCGC 1 cut(s) 312
BstKTI GATC 3 cut(s) 183, 436, 475
BstMAI GTCTC 1 cut(s) 218
BstMBI GATC 3 cut(s) 180, 433, 472
BstMWI GCNNNNNNNGC 2 cut(s) 318, 466
BstNI CCWGG 1 cut(s) 318
BstNSI RCATGY 1 cut(s) 203
BstSCI CCNGG 1 cut(s) 316
BstV1I GCAGC 1 cut(s) 139
BstV2I GAAGAC 1 cut(s) 512
BstX2I RGATCY 1 cut(s) 180
BstYI RGATCY 1 cut(s) 180
BsuI GTATCC 1 cut(s) 563
BsuRI GGCC 2 cut(s) 378, 460
BtsCI GGATG 1 cut(s) 271
BtsI GCAGTG 1 cut(s) 690
BtsIMutI CAGTG 3 cut(s) 552, 690, 771
Cac8I GCNNGC 1 cut(s) 664
CfoI GCGC 1 cut(s) 312
Cfr13I GGNCC 4 cut(s) 347, 377, 398, 459
Csp6I GTAC 1 cut(s) 760
CviAII CATG 3 cut(s) 61, 200, 736
CviQI GTAC 1 cut(s) 760
DdeI CTNAG 2 cut(s) 414, 699
DpnI GATC 3 cut(s) 182, 435, 474
DpnII GATC 3 cut(s) 180, 433, 472
Eco130I CCWWGG 3 cut(s) 86, 350, 463
Eco24I GRGCYC 1 cut(s) 60
Eco47I GGWCC 2 cut(s) 347, 398
Eco47III AGCGCT 1 cut(s) 311
EcoO109I RGGNCCY 2 cut(s) 347, 459
EcoRII CCWGG 1 cut(s) 316
EcoT14I CCWWGG 3 cut(s) 86, 350, 463
EcoT22I ATGCAT 1 cut(s) 140
EcoT38I GRGCYC 1 cut(s) 60
ErhI CCWWGG 3 cut(s) 86, 350, 463
FaeI CATG 3 cut(s) 64, 203, 739
FaqI GGGAC 2 cut(s) 275, 556
FatI CATG 3 cut(s) 60, 199, 735
FauI CCCGC 1 cut(s) 244
Fnu4HI GCNGC 1 cut(s) 128
FokI GGATG 1 cut(s) 258
FriOI GRGCYC 1 cut(s) 60
Fsp4HI GCNGC 1 cut(s) 128
FspBI CTAG 2 cut(s) 53, 395
GlaI GCGC 1 cut(s) 311
GluI GCNGC 1 cut(s) 128
HaeII RGCGCY 1 cut(s) 313
HaeIII GGCC 2 cut(s) 378, 460
HhaI GCGC 1 cut(s) 312
Hin1II CATG 3 cut(s) 64, 203, 739
Hin6I GCGC 1 cut(s) 310
HinP1I GCGC 1 cut(s) 310
HincII GTYRAC 1 cut(s) 169
HindII GTYRAC 1 cut(s) 169
HinfI GANTC 3 cut(s) 103, 614, 632
HphI GGTGA 4 cut(s) 22, 167, 569, 573
Hpy166II GTNNAC 3 cut(s) 169, 445, 690
Hpy188I TCNGA 1 cut(s) 180
Hpy188III TCNNGA 2 cut(s) 74, 431
Hpy8I GTNNAC 3 cut(s) 169, 445, 690
HpyAV CCTTC 2 cut(s) 354, 382
HpyCH4III ACNGT 3 cut(s) 511, 547, 755
HpyF10VI GCNNNNNNNGC 2 cut(s) 318, 466
HpyF3I CTNAG 2 cut(s) 414, 699
Hsp92II CATG 3 cut(s) 64, 203, 739
HspAI GCGC 1 cut(s) 310
Kzo9I GATC 3 cut(s) 180, 433, 472
LmnI GCTCC 1 cut(s) 406
LpnPI CCDG 8 cut(s) 138, 149, 252, 303, 324, 330, 330, 590
Lsp1109I GCAGC 1 cut(s) 139
LweI GCATC 2 cut(s) 280, 716
MaeI CTAG 2 cut(s) 53, 395
MaeIII GTNAC 1 cut(s) 12
MalI GATC 3 cut(s) 182, 435, 474
MbiI CCGCTC 1 cut(s) 721
MboI GATC 3 cut(s) 180, 433, 472
MboII GAAGA 6 cut(s) 288, 369, 517, 572, 661, 751
MfeI CAATTG 1 cut(s) 300
MflI RGATCY 1 cut(s) 180
MhlI GDGCHC 1 cut(s) 60
MluCI AATT 4 cut(s) 230, 300, 371, 563
MlyI GAGTC 2 cut(s) 623, 641
MnlI CCTC 5 cut(s) 38, 91, 151, 450, 774
Mph1103I ATGCAT 1 cut(s) 140
MseI TTAA 2 cut(s) 114, 210
MspR9I CCNGG 1 cut(s) 318
MunI CAATTG 1 cut(s) 300
Mva1269I GAATGC 1 cut(s) 679
MvaI CCWGG 1 cut(s) 318
MwoI GCNNNNNNNGC 2 cut(s) 318, 466
NdeII GATC 3 cut(s) 180, 433, 472
NlaIII CATG 3 cut(s) 64, 203, 739
NlaIV GGNNCC 1 cut(s) 461
NsiI ATGCAT 1 cut(s) 140
NspI RCATGY 1 cut(s) 203
PctI GAATGC 1 cut(s) 679
PfeI GAWTC 1 cut(s) 103
PkrI GCNGC 1 cut(s) 129
PleI GAGTC 2 cut(s) 622, 640
PpsI GAGTC 2 cut(s) 622, 640
PpuMI RGGWCCY 1 cut(s) 347
Psp5II RGGWCCY 1 cut(s) 347
Psp6I CCWGG 1 cut(s) 316
PspGI CCWGG 1 cut(s) 316
PspN4I GGNNCC 1 cut(s) 461
PspPI GGNCC 4 cut(s) 347, 377, 398, 459
PspPPI RGGWCCY 1 cut(s) 347
PsrI GAACNNNNNNTAC 2 cut(s) 734, 766
PsuI RGATCY 1 cut(s) 180
RsaI GTAC 1 cut(s) 761
RsaNI GTAC 1 cut(s) 760
SaqAI TTAA 2 cut(s) 114, 210
SatI GCNGC 1 cut(s) 128
Sau3AI GATC 3 cut(s) 180, 433, 472
Sau96I GGNCC 4 cut(s) 347, 377, 398, 459
SchI GAGTC 2 cut(s) 623, 641
ScrFI CCNGG 1 cut(s) 318
SduI GDGCHC 1 cut(s) 60
SetI ASST 7 cut(s) 72, 122, 162, 349, 365, 393, 411
SfaNI GCATC 2 cut(s) 280, 716
SinI GGWCC 2 cut(s) 347, 398
Sse9I AATT 4 cut(s) 230, 300, 371, 563
SsiI CCGC 2 cut(s) 251, 721
SspMI CTAG 2 cut(s) 53, 395
StyD4I CCNGG 1 cut(s) 316
StyI CCWWGG 3 cut(s) 86, 350, 463
TaaI ACNGT 3 cut(s) 511, 547, 755
TaqI TCGA 1 cut(s) 683
TasI AATT 4 cut(s) 230, 300, 371, 563
TfiI GAWTC 1 cut(s) 103
Tru1I TTAA 2 cut(s) 114, 210
Tru9I TTAA 2 cut(s) 114, 210
TscAI CASTG 3 cut(s) 552, 697, 778
TseI GCWGC 1 cut(s) 127
TspDTI ATGAA 1 cut(s) 752
TspRI CASTG 3 cut(s) 552, 697, 778
VpaK11BI GGWCC 2 cut(s) 347, 398
XapI RAATTY 2 cut(s) 230, 563
XceI RCATGY 1 cut(s) 203
XspI CTAG 2 cut(s) 53, 395
Zsp2I ATGCAT 1 cut(s) 140
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.