Rroxscaffold_1G00048810

Glycosyl transferases group 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0014525
Physical Location & Seq
Reverse (-)
68947839 .. 68949245
1407 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00048810.1

Sequence Viewer

Length: 1407 bp
ATGCCTATTAGATTCTCAACCATTCTCACTTTGATTCTACTCTTTACTTCCTTTTTCCTCTTCCTTTCATCACTCAAGAACACCCAAGAACCATTTTTTGGGGGTGATGAGAACACTCAATTCAATGGTGATCTTAGAGATGCTAAATTTCCATGGAACAAACTCTGTTTCGGTCCTTCTTTCGAAAAGCTCAAGCTAGCCGTCTTCTCCAAAACATGGCCAGCTGGTGCAGACGCGGGTGGTATGGAGCGCCATGCTTCCACATTGTACCAAGCACTTGCTGCAAAGGGTCATGAGATTCATGTCTTCACTGTGCCTTCAGATAGGAGGCCTCATTGGGACATACATGAAGGTAACCTTCATGTTTACTTTGCAGCTAATGATCATGGCTCTGTTAATTGTTCTCTAGCATTTGAAATTTTCAATAAAGTTAACTCGGATGGGGCATTCGATTATGTGCACACCGAGAGTGTTTCGTTGCCTTATTGGCGCGCGAAGATGCTGCCTAATGTGGCTGTCACTTGGCATGGGATATGGTACGAAATAATGCATTCCAAGTTACTGCAACAACTCCTCACCGACCCAAATGGGGATATGCTAGAGCCCATGACAGAGCTTCAAGAAGCAATGCCAAGGCTCGTTGAGGAGATTCGATTCTTTAAGAGCTATACGCAGCATATATGCATAAGCAATAGTGCTGGTGAGGTTCTGGTCAACATCTATCAGATCCCACAGAGAAATGTGCATGTTATACTTAATGGCGTGGATGAGACAGAATTTGTACCAGACCAAGAAGCGGGTGCAAGGTTCAGAGAAAAACACGGTATACCTGCCAATGTGAGCCTTGTGATGGGAGTGGCAGGGCGGCTGGTTAGGGACAAAGGGCATCCACTTCTTTACAAAGCCTTTTCTTCAATTGTGAAGCGCTACCCCGGCGTGTTTTTGCTTGTGGCAGGGTCAGGTCCTTGGAGAAGAAGGTATGCTGAATTAGGCCCAAATGTGAAGGTTCTAGGAGCATTGGAGCCTTTGGAGCTGTCTAAGTTTTACAATGCTCTTGATCTGTTTGTGAACCCCACATTGAGGCCTCAAGGGCTTGATCTAACATTGATTGAAGCAATGCAAAGTGGGAAGACAGTTCTAACTCCAAACTATCCAAGCATTGTTGGGACAGTGGTGGTGGGTGAAGAATTTGGATACACTTTTTCACCCAATGTCAAGTCTTTTGTTGAGGCTTTGGAGTCGGCCATAAAAGATGGGTCTAAAATGCTGAAGAAGAAAGGGGTGGCTTGCAAAAATTATGTGCATTCGATGTTCACTGCAACTAAGATGGCATCGGCTTATGAGCGGTTCTTTCTGTGCATGAAGAACCCAAAATTCTGTCAGTACCCTCTTTCCACTGATTGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glyco_trans_1_4 Glyco_transf_4 Glycos_transf_1

Protein Analysis

468

Amino Acids

52.63

Weight (kDa)

7.66

Isoelectric Point (pI)

37.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_4 PF13439 80 - 257 6.7e-17 Glycosyltransferase Family 4
Glyco_trans_4_4 PF13579 80 - 254 2.3e-08 Glycosyl transferase 4-like domain
Glycos_transf_1 PF00534 282 - 421 3.7e-19 Glycosyl transferases group 1
Glyco_trans_1_4 PF13692 283 - 418 3.7e-18 Glycosyl transferases group 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014525)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G73160
fragaria_vesca FvH4_3g18700
malus_domestica MD11G1259200.v1.1
prunus_persica Prupe.4G170700_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0031511
rosa_laevigata RLG00000033317 RLG00000033318
rosa_multiflora Rmu_sc0006344.1_g000008 Rmu_sc0009888.1_g000003
rosa_roxburghii Rroxscaffold_1G00048810
rosa_rugosa Rorug05G0126700
rosa_samantha Rh5AG219400 Rh5AG219500 Rh5BG218800 Rh5CG242400 Rh5DG224300
rosa_wichuraiana Rw5G020010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 838
AccB7I CCANNNNNTGG 2 cut(s) 98, 216
AccBSI CCGCTC 1 cut(s) 1345
AccI GTMKAC 1 cut(s) 826
AccII CGCG 3 cut(s) 236, 492, 494
AciI CCGC 4 cut(s) 236, 797, 865, 1345
AclWI GGATC 1 cut(s) 721
AcoI YGGCCR 2 cut(s) 218, 1242
AcsI RAATTY 5 cut(s) 146, 417, 776, 1187, 1373
AcuI CTGAAG 2 cut(s) 303, 1289
AfaI GTAC 4 cut(s) 269, 539, 783, 1385
AfeI AGCGCT 1 cut(s) 926
AfiI CCNNNNNNNGG 6 cut(s) 98, 216, 589, 796, 850, 1080
AgsI TTSAA 6 cut(s) 124, 416, 424, 620, 915, 1112
AjuI GAANNNNNNNTTGG 2 cut(s) 81, 113
AluBI AGCT 7 cut(s) 190, 196, 224, 377, 616, 666, 1033
AluI AGCT 7 cut(s) 190, 196, 224, 377, 616, 666, 1033
Alw21I GWGCWC 1 cut(s) 462
Alw26I GTCTC 1 cut(s) 764
Alw44I GTGCAC 1 cut(s) 458
AlwI GGATC 1 cut(s) 721
Aor51HI AGCGCT 1 cut(s) 926
AoxI GGCC 5 cut(s) 218, 329, 991, 1082, 1242
ApaLI GTGCAC 1 cut(s) 458
ApeKI GCWGC 4 cut(s) 281, 374, 502, 673
ApoI RAATTY 5 cut(s) 146, 417, 776, 1187, 1373
AspLEI GCGC 4 cut(s) 252, 492, 494, 927
AspS9I GGNCC 3 cut(s) 173, 962, 992
AsuC2I CCSGG 1 cut(s) 933
AsuHPI GGTGA 6 cut(s) 116, 140, 568, 713, 1193, 1197
AsuII TTCGAA 1 cut(s) 183
AsuNHI GCTAGC 1 cut(s) 196
AvaII GGWCC 2 cut(s) 173, 962
BaeGI GKGCMC 1 cut(s) 462
BalI TGGCCA 1 cut(s) 220
BanII GRGCYC 1 cut(s) 606
BbsI GAAGAC 3 cut(s) 196, 298, 1136
Bbv12I GWGCWC 1 cut(s) 462
BbvI GCAGC 4 cut(s) 268, 386, 489, 685
BccI CCATC 4 cut(s) 434, 844, 1247, 1321
BceAI ACGGC 1 cut(s) 185
BcgI CGANNNNNNTGC 2 cut(s) 484, 518
BciVI GTATCC 1 cut(s) 1187
BclI TGATCA 1 cut(s) 382
BcnI CCSGG 1 cut(s) 933
BcoDI GTCTC 1 cut(s) 764
BfaI CTAG 4 cut(s) 197, 407, 599, 1010
BfoI RGCGCY 2 cut(s) 253, 928
BfuAI ACCTGC 1 cut(s) 838
BfuI GTATCC 1 cut(s) 1187
BglI GCCNNNNNGGC 2 cut(s) 487, 1090
BisI GCNGC 5 cut(s) 282, 375, 503, 674, 866
BlsI GCNGC 5 cut(s) 283, 376, 504, 675, 867
Bme1390I CCNGG 1 cut(s) 933
Bme18I GGWCC 2 cut(s) 173, 962
BmgT120I GGNCC 3 cut(s) 173, 962, 992
BmiI GGNNCC 1 cut(s) 1023
BmrFI CCNGG 1 cut(s) 933
BmsI GCATC 4 cut(s) 130, 489, 895, 1340
BmtI GCTAGC 1 cut(s) 200
BpiI GAAGAC 3 cut(s) 196, 298, 1136
Bpu14I TTCGAA 1 cut(s) 183
BpuEI CTTGAG 3 cut(s) 59, 176, 1071
BpuMI CCSGG 1 cut(s) 933
BsaJI CCNNGG 4 cut(s) 152, 632, 931, 965
Bsc4I CCNNNNNNNGG 6 cut(s) 98, 216, 589, 796, 850, 1080
Bse3DI GCAATG 2 cut(s) 633, 1122
BseDI CCNNGG 4 cut(s) 152, 632, 931, 965
BseGI GGATG 3 cut(s) 445, 772, 886
BseLI CCNNNNNNNGG 6 cut(s) 98, 216, 589, 796, 850, 1080
BseMI GCAATG 2 cut(s) 633, 1122
BsePI GCGCGC 1 cut(s) 490
BseRI GAGGAG 2 cut(s) 563, 659
BseSI GKGCMC 1 cut(s) 462
BseXI GCAGC 4 cut(s) 268, 386, 489, 685
BsgI GTGCAG 1 cut(s) 249
Bsh1236I CGCG 3 cut(s) 236, 492, 494
BshFI GGCC 5 cut(s) 220, 331, 993, 1084, 1244
BsiHKAI GWGCWC 1 cut(s) 462
BsiSI CCGG 1 cut(s) 933
BslFI GGGAC 3 cut(s) 353, 890, 1180
BslI CCNNNNNNNGG 6 cut(s) 98, 216, 589, 796, 850, 1080
BsmAI GTCTC 1 cut(s) 764
BsmFI GGGAC 3 cut(s) 353, 890, 1180
BsmI GAATGC 3 cut(s) 446, 550, 1303
BsnI GGCC 5 cut(s) 220, 331, 993, 1084, 1244
Bsp119I TTCGAA 1 cut(s) 183
Bsp1286I GDGCHC 2 cut(s) 462, 606
Bsp143I GATC 5 cut(s) 130, 382, 726, 1057, 1096
Bsp19I CCATGG 1 cut(s) 152
BspACI CCGC 4 cut(s) 236, 797, 865, 1345
BspANI GGCC 5 cut(s) 220, 331, 993, 1084, 1244
BspFNI CGCG 3 cut(s) 236, 492, 494
BspHI TCATGA 1 cut(s) 292
BspLI GGNNCC 1 cut(s) 1023
BspMI ACCTGC 1 cut(s) 838
BspOI GCTAGC 1 cut(s) 200
BspPI GGATC 1 cut(s) 721
BspT104I TTCGAA 1 cut(s) 183
BsrBI CCGCTC 1 cut(s) 1345
BsrDI GCAATG 2 cut(s) 633, 1122
BssECI CCNNGG 4 cut(s) 152, 632, 931, 965
BssHII GCGCGC 1 cut(s) 490
BssMI GATC 5 cut(s) 130, 382, 726, 1057, 1096
BssNAI GTATAC 1 cut(s) 827
BssT1I CCWWGG 3 cut(s) 152, 632, 965
Bst1107I GTATAC 1 cut(s) 827
Bst4CI ACNGT 4 cut(s) 313, 824, 1135, 1171
Bst6I CTCTTC 1 cut(s) 65
BstAPI GCANNNNNTGC 1 cut(s) 281
BstBI TTCGAA 1 cut(s) 183
BstC8I GCNNGC 4 cut(s) 198, 222, 492, 1288
BstDEI CTNAG 3 cut(s) 134, 1038, 1323
BstDSI CCRYGG 1 cut(s) 152
BstEII GGTNACC 1 cut(s) 353
BstF5I GGATG 3 cut(s) 445, 772, 886
BstFNI CGCG 3 cut(s) 236, 492, 494
BstH2I RGCGCY 2 cut(s) 253, 928
BstHHI GCGC 4 cut(s) 252, 492, 494, 927
BstKTI GATC 5 cut(s) 133, 385, 729, 1060, 1099
BstMAI GTCTC 1 cut(s) 764
BstMBI GATC 5 cut(s) 130, 382, 726, 1057, 1096
BstMWI GCNNNNNNNGC 5 cut(s) 281, 487, 933, 1030, 1090
BstNSI RCATGY 1 cut(s) 749
BstPI GGTNACC 1 cut(s) 353
BstSCI CCNGG 1 cut(s) 931
BstSLI GKGCMC 1 cut(s) 462
BstUI CGCG 3 cut(s) 236, 492, 494
BstV1I GCAGC 4 cut(s) 268, 386, 489, 685
BstV2I GAAGAC 3 cut(s) 196, 298, 1136
BstX2I RGATCY 1 cut(s) 726
BstYI RGATCY 1 cut(s) 726
BstZ17I GTATAC 1 cut(s) 827
BsuI GTATCC 1 cut(s) 1187
BsuRI GGCC 5 cut(s) 220, 331, 993, 1084, 1244
BtgI CCRYGG 1 cut(s) 152
BtsCI GGATG 3 cut(s) 445, 772, 886
BtsI GCAGTG 1 cut(s) 1314
BtsIMutI CAGTG 4 cut(s) 309, 1176, 1314, 1395
BveI ACCTGC 1 cut(s) 838
Cac8I GCNNGC 4 cut(s) 198, 222, 492, 1288
CciI TCATGA 1 cut(s) 292
CfoI GCGC 4 cut(s) 252, 492, 494, 927
Cfr13I GGNCC 3 cut(s) 173, 962, 992
CseI GACGC 1 cut(s) 242
Csp6I GTAC 4 cut(s) 268, 538, 782, 1384
CviQI GTAC 4 cut(s) 268, 538, 782, 1384
DdeI CTNAG 3 cut(s) 134, 1038, 1323
DpnI GATC 5 cut(s) 132, 384, 728, 1059, 1098
DpnII GATC 5 cut(s) 130, 382, 726, 1057, 1096
EaeI YGGCCR 2 cut(s) 218, 1242
Eam1104I CTCTTC 1 cut(s) 65
EarI CTCTTC 1 cut(s) 65
Eco130I CCWWGG 3 cut(s) 152, 632, 965
Eco147I AGGCCT 2 cut(s) 331, 1084
Eco24I GRGCYC 1 cut(s) 606
Eco47I GGWCC 2 cut(s) 173, 962
Eco47III AGCGCT 1 cut(s) 926
Eco57I CTGAAG 2 cut(s) 303, 1289
Eco91I GGTNACC 1 cut(s) 353
EcoO109I RGGNCCY 1 cut(s) 962
EcoO65I GGTNACC 1 cut(s) 353
EcoT14I CCWWGG 3 cut(s) 152, 632, 965
EcoT22I ATGCAT 2 cut(s) 552, 686
EcoT38I GRGCYC 1 cut(s) 606
ErhI CCWWGG 3 cut(s) 152, 632, 965
FalI AAGNNNNNCTT 2 cut(s) 342, 374
FaqI GGGAC 3 cut(s) 353, 890, 1180
FauI CCCGC 2 cut(s) 229, 790
FbaI TGATCA 1 cut(s) 382
FblI GTMKAC 1 cut(s) 826
Fnu4HI GCNGC 5 cut(s) 282, 375, 503, 674, 866
FokI GGATG 3 cut(s) 452, 779, 873
FriOI GRGCYC 1 cut(s) 606
Fsp4HI GCNGC 5 cut(s) 282, 375, 503, 674, 866
FspBI CTAG 4 cut(s) 197, 407, 599, 1010
GlaI GCGC 4 cut(s) 251, 491, 493, 926
GluI GCNGC 5 cut(s) 282, 375, 503, 674, 866
HaeII RGCGCY 2 cut(s) 253, 928
HaeIII GGCC 5 cut(s) 220, 331, 993, 1084, 1244
HapII CCGG 1 cut(s) 933
HgaI GACGC 1 cut(s) 242
HhaI GCGC 4 cut(s) 252, 492, 494, 927
Hin6I GCGC 4 cut(s) 250, 490, 492, 925
HinP1I GCGC 4 cut(s) 250, 490, 492, 925
HincII GTYRAC 2 cut(s) 433, 715
HindII GTYRAC 2 cut(s) 433, 715
HinfI GANTC 6 cut(s) 12, 34, 298, 649, 654, 1238
HpaI GTTAAC 1 cut(s) 433
HpaII CCGG 1 cut(s) 933
HphI GGTGA 6 cut(s) 116, 140, 568, 713, 1193, 1197
Hpy166II GTNNAC 7 cut(s) 367, 433, 460, 715, 827, 1069, 1314
Hpy188I TCNGA 4 cut(s) 322, 439, 726, 812
Hpy188III TCNNGA 4 cut(s) 76, 293, 620, 1055
Hpy8I GTNNAC 7 cut(s) 367, 433, 460, 715, 827, 1069, 1314
HpyAV CCTTC 6 cut(s) 186, 327, 344, 368, 969, 997
HpyCH4III ACNGT 4 cut(s) 313, 824, 1135, 1171
HpyF10VI GCNNNNNNNGC 5 cut(s) 281, 487, 933, 1030, 1090
HpyF3I CTNAG 3 cut(s) 134, 1038, 1323
HspAI GCGC 4 cut(s) 250, 490, 492, 925
Ksp22I TGATCA 1 cut(s) 382
KspAI GTTAAC 1 cut(s) 433
Kzo9I GATC 5 cut(s) 130, 382, 726, 1057, 1096
LmnI GCTCC 4 cut(s) 247, 1013, 1021, 1030
Lsp1109I GCAGC 4 cut(s) 268, 386, 489, 685
LweI GCATC 4 cut(s) 130, 489, 895, 1340
MaeI CTAG 4 cut(s) 197, 407, 599, 1010
MaeIII GTNAC 3 cut(s) 353, 517, 558
MalI GATC 5 cut(s) 132, 384, 728, 1059, 1098
MbiI CCGCTC 1 cut(s) 1345
MboI GATC 5 cut(s) 130, 382, 726, 1057, 1096
MfeI CAATTG 1 cut(s) 915
MflI RGATCY 1 cut(s) 726
MhlI GDGCHC 2 cut(s) 462, 606
MlsI TGGCCA 1 cut(s) 220
MluNI TGGCCA 1 cut(s) 220
MlyI GAGTC 1 cut(s) 1247
Mox20I TGGCCA 1 cut(s) 220
Mph1103I ATGCAT 2 cut(s) 552, 686
MscI TGGCCA 1 cut(s) 220
MseI TTAA 4 cut(s) 396, 432, 660, 756
Msp20I TGGCCA 1 cut(s) 220
MspA1I CMGCKG 1 cut(s) 224
MspI CCGG 1 cut(s) 933
MspR9I CCNGG 1 cut(s) 933
MunI CAATTG 1 cut(s) 915
Mva1269I GAATGC 3 cut(s) 446, 550, 1303
MvnI CGCG 3 cut(s) 236, 492, 494
MwoI GCNNNNNNNGC 5 cut(s) 281, 487, 933, 1030, 1090
NciI CCSGG 1 cut(s) 933
NcoI CCATGG 1 cut(s) 152
NdeII GATC 5 cut(s) 130, 382, 726, 1057, 1096
NheI GCTAGC 1 cut(s) 196
NlaIV GGNNCC 1 cut(s) 1023
NmuCI GTSAC 1 cut(s) 517
NsiI ATGCAT 2 cut(s) 552, 686
NspI RCATGY 1 cut(s) 749
NspV TTCGAA 1 cut(s) 183
PagI TCATGA 1 cut(s) 292
PauI GCGCGC 1 cut(s) 490
PceI AGGCCT 2 cut(s) 331, 1084
PctI GAATGC 3 cut(s) 446, 550, 1303
PfeI GAWTC 5 cut(s) 12, 34, 298, 649, 654
PflMI CCANNNNNTGG 2 cut(s) 98, 216
PkrI GCNGC 5 cut(s) 283, 376, 504, 675, 867
PleI GAGTC 1 cut(s) 1246
PpsI GAGTC 1 cut(s) 1246
PpuMI RGGWCCY 1 cut(s) 962
Psp5II RGGWCCY 1 cut(s) 962
PspEI GGTNACC 1 cut(s) 353
PspN4I GGNNCC 1 cut(s) 1023
PspPI GGNCC 3 cut(s) 173, 962, 992
PspPPI RGGWCCY 1 cut(s) 962
PsuI RGATCY 1 cut(s) 726
PteI GCGCGC 1 cut(s) 490
PvuII CAGCTG 1 cut(s) 224
RsaI GTAC 4 cut(s) 269, 539, 783, 1385
RsaNI GTAC 4 cut(s) 268, 538, 782, 1384
SaqAI TTAA 4 cut(s) 396, 432, 660, 756
SatI GCNGC 5 cut(s) 282, 375, 503, 674, 866
Sau3AI GATC 5 cut(s) 130, 382, 726, 1057, 1096
Sau96I GGNCC 3 cut(s) 173, 962, 992
SchI GAGTC 1 cut(s) 1247
ScrFI CCNGG 1 cut(s) 933
SduI GDGCHC 2 cut(s) 462, 606
SfaNI GCATC 4 cut(s) 130, 489, 895, 1340
SfuI TTCGAA 1 cut(s) 183
SinI GGWCC 2 cut(s) 173, 962
SmlI CTYRAG 3 cut(s) 74, 191, 1086
SmoI CTYRAG 3 cut(s) 74, 191, 1086
SseBI AGGCCT 2 cut(s) 331, 1084
SsiI CCGC 4 cut(s) 236, 797, 865, 1345
SspMI CTAG 4 cut(s) 197, 407, 599, 1010
StuI AGGCCT 2 cut(s) 331, 1084
StyD4I CCNGG 1 cut(s) 931
StyI CCWWGG 3 cut(s) 152, 632, 965
TaaI ACNGT 4 cut(s) 313, 824, 1135, 1171
TaqI TCGA 4 cut(s) 183, 450, 652, 1307
TaqII GACCGA 1 cut(s) 161
TauI GCSGC 1 cut(s) 868
TfiI GAWTC 5 cut(s) 12, 34, 298, 649, 654
Tru1I TTAA 4 cut(s) 396, 432, 660, 756
Tru9I TTAA 4 cut(s) 396, 432, 660, 756
TscAI CASTG 4 cut(s) 316, 1176, 1321, 1402
TseFI GTSAC 1 cut(s) 517
TseI GCWGC 4 cut(s) 281, 374, 502, 673
Tsp45I GTSAC 1 cut(s) 517
TspDTI ATGAA 5 cut(s) 57, 290, 350, 363, 1376
TspRI CASTG 4 cut(s) 316, 1176, 1321, 1402
Van91I CCANNNNNTGG 2 cut(s) 98, 216
VneI GTGCAC 1 cut(s) 458
VpaK11BI GGWCC 2 cut(s) 173, 962
XapI RAATTY 5 cut(s) 146, 417, 776, 1187, 1373
XceI RCATGY 1 cut(s) 749
XmiI GTMKAC 1 cut(s) 826
XspI CTAG 4 cut(s) 197, 407, 599, 1010
Zsp2I ATGCAT 2 cut(s) 552, 686
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.