Rh5AG219400

Glycosyl transferases group 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0014525
Physical Location & Seq
Forward (+)
25793371 .. 25793943
573 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG219400.1

Sequence Viewer

Length: 549 bp
ATGGGATTGAAACACCAAACTTGCAAAAGCTCTTCATCTTCTAACTTCATGCCTATTAGGTTCTCAACCATTCTCACTTTGATTCTACTCTTTACTTCCTTTTTCCTCTTCCTTTCATCACTCAAGAACACCCAAGAACCATTTTTTGGGGGTGATGAGAACACTCAATTCAATGGTGATCTTAGAGATGCTAAATTCCCATGGAACAAGCTCTGTTTCGGTCCTTCTTTCGAAAAGCTCAAGCTAGCCGTCTTCTCCAAAACATGGCCAGTTGGTGCAGACGCGGGTGGTATGGAGCGCCATGCTTCCACATTGTACCAAGCACTTGCTGCAAAAGGTCATGAGGTTCATGTCTTCACTGTGCCTTCAGATAGGAGGCCTCATTGGGACATACATGAAGCTAATGATCATGGCTCTGTTAATTGTGCTCTAGCGTTTGAAATTTTCAATAAAGTTAACTCGGATGGGGCATTCGATTATGTGCACACCGAGAGTGTTTCGTTGCCTTATTGGCGTGTGAAGATGCTGCCAAATGTGGCTGTCACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glyco_trans_1_4 Glyco_transf_4 Glycos_transf_1

Protein Analysis

182

Amino Acids

20.45

Weight (kDa)

7.09

Isoelectric Point (pI)

34.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_4 PF13439 96 - 128 6.7e-07 Glycosyltransferase Family 4
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014525)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G73160
fragaria_vesca FvH4_3g18700
malus_domestica MD11G1259200.v1.1
prunus_persica Prupe.4G170700_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0031511
rosa_laevigata RLG00000033317 RLG00000033318
rosa_multiflora Rmu_sc0006344.1_g000008 Rmu_sc0009888.1_g000003
rosa_roxburghii Rroxscaffold_1G00048810
rosa_rugosa Rorug05G0126700
rosa_samantha Rh5AG219400 Rh5AG219500 Rh5BG218800 Rh5CG242400 Rh5DG224300
rosa_wichuraiana Rw5G020010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 146, 264
AccII CGCG 1 cut(s) 284
AciI CCGC 1 cut(s) 284
AcoI YGGCCR 1 cut(s) 266
AcsI RAATTY 2 cut(s) 194, 441
AcuI CTGAAG 1 cut(s) 351
AfaI GTAC 1 cut(s) 317
AfiI CCNNNNNNNGG 2 cut(s) 146, 264
AgsI TTSAA 4 cut(s) 10, 172, 440, 448
AjuI GAANNNNNNNTTGG 2 cut(s) 129, 161
AluBI AGCT 5 cut(s) 30, 211, 238, 244, 401
AluI AGCT 5 cut(s) 30, 211, 238, 244, 401
Alw21I GWGCWC 2 cut(s) 430, 486
Alw44I GTGCAC 1 cut(s) 482
AoxI GGCC 2 cut(s) 266, 377
ApaLI GTGCAC 1 cut(s) 482
ApeKI GCWGC 2 cut(s) 329, 526
ApoI RAATTY 2 cut(s) 194, 441
AspLEI GCGC 1 cut(s) 300
AspS9I GGNCC 1 cut(s) 221
AsuHPI GGTGA 2 cut(s) 164, 188
AsuII TTCGAA 1 cut(s) 231
AsuNHI GCTAGC 1 cut(s) 244
AvaII GGWCC 1 cut(s) 221
BaeGI GKGCMC 1 cut(s) 486
BalI TGGCCA 1 cut(s) 268
BbsI GAAGAC 2 cut(s) 244, 346
Bbv12I GWGCWC 2 cut(s) 430, 486
BbvI GCAGC 2 cut(s) 316, 513
BccI CCATC 1 cut(s) 458
BceAI ACGGC 1 cut(s) 233
BclI TGATCA 1 cut(s) 406
BfaI CTAG 2 cut(s) 245, 431
BfoI RGCGCY 1 cut(s) 301
BglI GCCNNNNNGGC 1 cut(s) 511
BisI GCNGC 2 cut(s) 330, 527
BlsI GCNGC 2 cut(s) 331, 528
Bme18I GGWCC 1 cut(s) 221
BmgT120I GGNCC 1 cut(s) 221
BmsI GCATC 2 cut(s) 178, 513
BmtI GCTAGC 1 cut(s) 248
BpiI GAAGAC 2 cut(s) 244, 346
Bpu14I TTCGAA 1 cut(s) 231
BpuEI CTTGAG 2 cut(s) 107, 224
BsaJI CCNNGG 1 cut(s) 200
Bsc4I CCNNNNNNNGG 2 cut(s) 146, 264
Bse1I ACTGG 1 cut(s) 269
BseDI CCNNGG 1 cut(s) 200
BseGI GGATG 1 cut(s) 469
BseLI CCNNNNNNNGG 2 cut(s) 146, 264
BseNI ACTGG 1 cut(s) 269
BseSI GKGCMC 1 cut(s) 486
BseXI GCAGC 2 cut(s) 316, 513
BsgI GTGCAG 1 cut(s) 297
Bsh1236I CGCG 1 cut(s) 284
BshFI GGCC 2 cut(s) 268, 379
BsiHKAI GWGCWC 2 cut(s) 430, 486
BslFI GGGAC 1 cut(s) 401
BslI CCNNNNNNNGG 2 cut(s) 146, 264
BsmFI GGGAC 1 cut(s) 401
BsmI GAATGC 1 cut(s) 470
BsnI GGCC 2 cut(s) 268, 379
Bsp119I TTCGAA 1 cut(s) 231
Bsp1286I GDGCHC 2 cut(s) 430, 486
Bsp143I GATC 2 cut(s) 178, 406
Bsp19I CCATGG 1 cut(s) 200
BspACI CCGC 1 cut(s) 284
BspANI GGCC 2 cut(s) 268, 379
BspFNI CGCG 1 cut(s) 284
BspHI TCATGA 1 cut(s) 340
BspOI GCTAGC 1 cut(s) 248
BspQI GCTCTTC 1 cut(s) 37
BspT104I TTCGAA 1 cut(s) 231
BsrI ACTGG 1 cut(s) 269
BssECI CCNNGG 1 cut(s) 200
BssMI GATC 2 cut(s) 178, 406
BssT1I CCWWGG 1 cut(s) 200
Bst4CI ACNGT 1 cut(s) 361
Bst6I CTCTTC 2 cut(s) 37, 113
BstAPI GCANNNNNTGC 1 cut(s) 329
BstBI TTCGAA 1 cut(s) 231
BstC8I GCNNGC 1 cut(s) 246
BstDEI CTNAG 1 cut(s) 182
BstDSI CCRYGG 1 cut(s) 200
BstF5I GGATG 1 cut(s) 469
BstFNI CGCG 1 cut(s) 284
BstH2I RGCGCY 1 cut(s) 301
BstHHI GCGC 1 cut(s) 300
BstKTI GATC 2 cut(s) 181, 409
BstMBI GATC 2 cut(s) 178, 406
BstMWI GCNNNNNNNGC 2 cut(s) 329, 511
BstSLI GKGCMC 1 cut(s) 486
BstUI CGCG 1 cut(s) 284
BstV1I GCAGC 2 cut(s) 316, 513
BstV2I GAAGAC 2 cut(s) 244, 346
BsuRI GGCC 2 cut(s) 268, 379
BtgI CCRYGG 1 cut(s) 200
BtsCI GGATG 1 cut(s) 469
BtsIMutI CAGTG 1 cut(s) 357
Cac8I GCNNGC 1 cut(s) 246
CciI TCATGA 1 cut(s) 340
CfoI GCGC 1 cut(s) 300
Cfr13I GGNCC 1 cut(s) 221
CseI GACGC 1 cut(s) 290
Csp6I GTAC 1 cut(s) 316
CviAII CATG 8 cut(s) 49, 201, 264, 302, 341, 350, 395, 410
CviQI GTAC 1 cut(s) 316
DdeI CTNAG 1 cut(s) 182
DpnI GATC 2 cut(s) 180, 408
DpnII GATC 2 cut(s) 178, 406
EaeI YGGCCR 1 cut(s) 266
Eam1104I CTCTTC 2 cut(s) 37, 113
EarI CTCTTC 2 cut(s) 37, 113
Eco130I CCWWGG 1 cut(s) 200
Eco147I AGGCCT 1 cut(s) 379
Eco47I GGWCC 1 cut(s) 221
Eco57I CTGAAG 1 cut(s) 351
EcoT14I CCWWGG 1 cut(s) 200
ErhI CCWWGG 1 cut(s) 200
FaeI CATG 8 cut(s) 52, 204, 267, 305, 344, 353, 398, 413
FaqI GGGAC 1 cut(s) 401
FatI CATG 8 cut(s) 48, 200, 263, 301, 340, 349, 394, 409
FauI CCCGC 1 cut(s) 277
FbaI TGATCA 1 cut(s) 406
Fnu4HI GCNGC 2 cut(s) 330, 527
FokI GGATG 1 cut(s) 476
Fsp4HI GCNGC 2 cut(s) 330, 527
FspBI CTAG 2 cut(s) 245, 431
GlaI GCGC 1 cut(s) 299
GluI GCNGC 2 cut(s) 330, 527
HaeII RGCGCY 1 cut(s) 301
HaeIII GGCC 2 cut(s) 268, 379
HgaI GACGC 1 cut(s) 290
HhaI GCGC 1 cut(s) 300
Hin1II CATG 8 cut(s) 52, 204, 267, 305, 344, 353, 398, 413
Hin6I GCGC 1 cut(s) 298
HinP1I GCGC 1 cut(s) 298
HincII GTYRAC 1 cut(s) 457
HindII GTYRAC 1 cut(s) 457
HinfI GANTC 1 cut(s) 82
HpaI GTTAAC 1 cut(s) 457
HphI GGTGA 2 cut(s) 164, 188
Hpy166II GTNNAC 2 cut(s) 457, 484
Hpy188I TCNGA 2 cut(s) 370, 463
Hpy188III TCNNGA 2 cut(s) 124, 341
Hpy8I GTNNAC 2 cut(s) 457, 484
HpyAV CCTTC 2 cut(s) 234, 375
HpyCH4III ACNGT 1 cut(s) 361
HpyCH4V TGCA 4 cut(s) 24, 278, 332, 484
HpyF10VI GCNNNNNNNGC 2 cut(s) 329, 511
HpyF3I CTNAG 1 cut(s) 182
Hsp92II CATG 8 cut(s) 52, 204, 267, 305, 344, 353, 398, 413
HspAI GCGC 1 cut(s) 298
Ksp22I TGATCA 1 cut(s) 406
KspAI GTTAAC 1 cut(s) 457
Kzo9I GATC 2 cut(s) 178, 406
LguI GCTCTTC 1 cut(s) 37
LmnI GCTCC 1 cut(s) 295
LpnPI CCDG 1 cut(s) 282
Lsp1109I GCAGC 2 cut(s) 316, 513
LweI GCATC 2 cut(s) 178, 513
MaeI CTAG 2 cut(s) 245, 431
MaeIII GTNAC 1 cut(s) 541
MalI GATC 2 cut(s) 180, 408
MboI GATC 2 cut(s) 178, 406
MboII GAAGA 6 cut(s) 24, 30, 100, 244, 346, 532
MhlI GDGCHC 2 cut(s) 430, 486
MlsI TGGCCA 1 cut(s) 268
MluCI AATT 4 cut(s) 167, 194, 421, 441
MluNI TGGCCA 1 cut(s) 268
MnlI CCTC 4 cut(s) 116, 337, 369, 390
Mox20I TGGCCA 1 cut(s) 268
MscI TGGCCA 1 cut(s) 268
MseI TTAA 2 cut(s) 420, 456
Msp20I TGGCCA 1 cut(s) 268
Mva1269I GAATGC 1 cut(s) 470
MvnI CGCG 1 cut(s) 284
MwoI GCNNNNNNNGC 2 cut(s) 329, 511
NcoI CCATGG 1 cut(s) 200
NdeII GATC 2 cut(s) 178, 406
NheI GCTAGC 1 cut(s) 244
NlaIII CATG 8 cut(s) 52, 204, 267, 305, 344, 353, 398, 413
NmuCI GTSAC 1 cut(s) 541
NspV TTCGAA 1 cut(s) 231
PagI TCATGA 1 cut(s) 340
PceI AGGCCT 1 cut(s) 379
PciSI GCTCTTC 1 cut(s) 37
PctI GAATGC 1 cut(s) 470
PfeI GAWTC 1 cut(s) 82
PflMI CCANNNNNTGG 2 cut(s) 146, 264
PkrI GCNGC 2 cut(s) 331, 528
PspPI GGNCC 1 cut(s) 221
RsaI GTAC 1 cut(s) 317
RsaNI GTAC 1 cut(s) 316
SapI GCTCTTC 1 cut(s) 37
SaqAI TTAA 2 cut(s) 420, 456
SatI GCNGC 2 cut(s) 330, 527
Sau3AI GATC 2 cut(s) 178, 406
Sau96I GGNCC 1 cut(s) 221
SduI GDGCHC 2 cut(s) 430, 486
SetI ASST 8 cut(s) 32, 62, 213, 240, 246, 340, 348, 403
SfaNI GCATC 2 cut(s) 178, 513
SfuI TTCGAA 1 cut(s) 231
SinI GGWCC 1 cut(s) 221
SmlI CTYRAG 2 cut(s) 122, 239
SmoI CTYRAG 2 cut(s) 122, 239
Sse9I AATT 4 cut(s) 167, 194, 421, 441
SseBI AGGCCT 1 cut(s) 379
SsiI CCGC 1 cut(s) 284
SspMI CTAG 2 cut(s) 245, 431
StuI AGGCCT 1 cut(s) 379
StyI CCWWGG 1 cut(s) 200
TaaI ACNGT 1 cut(s) 361
TaqI TCGA 2 cut(s) 231, 474
TaqII GACCGA 1 cut(s) 209
TasI AATT 4 cut(s) 167, 194, 421, 441
TfiI GAWTC 1 cut(s) 82
Tru1I TTAA 2 cut(s) 420, 456
Tru9I TTAA 2 cut(s) 420, 456
TscAI CASTG 1 cut(s) 364
TseFI GTSAC 1 cut(s) 541
TseI GCWGC 2 cut(s) 329, 526
Tsp45I GTSAC 1 cut(s) 541
TspDTI ATGAA 5 cut(s) 24, 37, 105, 338, 411
TspRI CASTG 1 cut(s) 364
Van91I CCANNNNNTGG 2 cut(s) 146, 264
VneI GTGCAC 1 cut(s) 482
VpaK11BI GGWCC 1 cut(s) 221
XapI RAATTY 2 cut(s) 194, 441
XspI CTAG 2 cut(s) 245, 431
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.