Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006344.1

Orthogroup ID

OG0014525

Physical Location & Seq

Genomic Coordinates Reverse (-)

36016 .. 36762

Gene Structure 747 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006344.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 747 bp

atgggattgaaacaccaaactcgcaaaagctcttcatcttctaacttcatgcctattaggttctcaaccattctcactttgattctactctttacttcctttttcctcttcctttcatcactcaagaacacccaagaaccattttttgggggtgatgagaacactcaattcaatggtgatcttagagatgctaaattcccatggaacaaactctgtttcggtccttctttcgaaaagctcaagctagccgtcttctccaaaacatggccagttggtgcagacgcgggtggtatggagcgccatgcttccacattgtaccaagcacttgctgcaaagggtcatgagattcatgtcttcactgtgccttcagataggaggcctcattgggacatacatgaaggtaaccttaatgtttattttgcagctaatgatcatggctctgttaattgttctctagcgtttgaaattttcaataaagttaactcggatggggcattcgattatgtgcacaccgagagtgtttcgttgccttattggcgtgcgaagatgctgcctaatgtggctgtcacttggcatgggatatggtacgaaataatgcattccaagttactgcaacaactcctcaccgacccaaatggggatatgctagagcccatgacagagcttcaagaagcaatgccaaggctcgttgaggagattcggttctttaagagctatacgcagcatatatatatgcataagcaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_trans_1_4 Glyco_transf_4 Glycos_transf_1

Protein Analysis

248

Amino Acids

28.5

Weight (kDa)

6.63

Isoelectric Point (pI)

45.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014525)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G73160
fragaria_vesca	FvH4_3g18700
malus_domestica	MD11G1259200.v1.1
prunus_persica	Prupe.4G170700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0031511
rosa_laevigata	RLG00000033317 RLG00000033318
rosa_multiflora	Rmu_sc0006344.1_g000008 Rmu_sc0009888.1_g000003
rosa_roxburghii	Rroxscaffold_1G00048810
rosa_rugosa	Rorug05G0126700
rosa_samantha	Rh5AG219400 Rh5AG219500 Rh5BG218800 Rh5CG242400 Rh5DG224300
rosa_wichuraiana	Rw5G020010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	146, 264
AccII	CGCG	1 cut(s)	284
AciI	CCGC	1 cut(s)	284
AcoI	YGGCCR	1 cut(s)	266
AcsI	RAATTY	2 cut(s)	194, 465
AcuI	CTGAAG	1 cut(s)	351
AfaI	GTAC	2 cut(s)	317, 587
AfiI	CCNNNNNNNGG	3 cut(s)	146, 264, 637
AgsI	TTSAA	5 cut(s)	10, 172, 464, 472, 668
AjuI	GAANNNNNNNTTGG	2 cut(s)	129, 161
AloI	GAACNNNNNNTCC	2 cut(s)	686, 718
AluBI	AGCT	6 cut(s)	30, 238, 244, 425, 664, 714
AluI	AGCT	6 cut(s)	30, 238, 244, 425, 664, 714
Alw21I	GWGCWC	1 cut(s)	510
Alw44I	GTGCAC	1 cut(s)	506
AoxI	GGCC	2 cut(s)	266, 377
ApaLI	GTGCAC	1 cut(s)	506
ApeKI	GCWGC	4 cut(s)	329, 422, 550, 721
ApoI	RAATTY	2 cut(s)	194, 465
AspLEI	GCGC	1 cut(s)	300
AspS9I	GGNCC	1 cut(s)	221
AsuHPI	GGTGA	3 cut(s)	164, 188, 616
AsuII	TTCGAA	1 cut(s)	231
AsuNHI	GCTAGC	1 cut(s)	244
AvaII	GGWCC	1 cut(s)	221
BaeGI	GKGCMC	1 cut(s)	510
BalI	TGGCCA	1 cut(s)	268
BanII	GRGCYC	1 cut(s)	654
BbsI	GAAGAC	2 cut(s)	244, 346
Bbv12I	GWGCWC	1 cut(s)	510
BbvI	GCAGC	4 cut(s)	316, 434, 537, 733
BccI	CCATC	1 cut(s)	482
BceAI	ACGGC	1 cut(s)	233
BcgI	CGANNNNNNTGC	2 cut(s)	532, 566
BclI	TGATCA	1 cut(s)	430
BfaI	CTAG	3 cut(s)	245, 455, 647
BfoI	RGCGCY	1 cut(s)	301
BglI	GCCNNNNNGGC	1 cut(s)	535
BisI	GCNGC	4 cut(s)	330, 423, 551, 722
BlsI	GCNGC	4 cut(s)	331, 424, 552, 723
Bme18I	GGWCC	1 cut(s)	221
BmgT120I	GGNCC	1 cut(s)	221
BmsI	GCATC	2 cut(s)	178, 537
BmtI	GCTAGC	1 cut(s)	248
BpiI	GAAGAC	2 cut(s)	244, 346
Bpu14I	TTCGAA	1 cut(s)	231
BpuEI	CTTGAG	2 cut(s)	107, 224
BsaJI	CCNNGG	2 cut(s)	200, 680
BsaXI	ACNNNNNCTCC	2 cut(s)	686, 716
Bsc4I	CCNNNNNNNGG	3 cut(s)	146, 264, 637
Bse1I	ACTGG	1 cut(s)	269
Bse3DI	GCAATG	1 cut(s)	681
BseDI	CCNNGG	2 cut(s)	200, 680
BseGI	GGATG	1 cut(s)	493
BseLI	CCNNNNNNNGG	3 cut(s)	146, 264, 637
BseMI	GCAATG	1 cut(s)	681
BseNI	ACTGG	1 cut(s)	269
BseRI	GAGGAG	2 cut(s)	611, 707
BseSI	GKGCMC	1 cut(s)	510
BseXI	GCAGC	4 cut(s)	316, 434, 537, 733
BsgI	GTGCAG	1 cut(s)	297
Bsh1236I	CGCG	1 cut(s)	284
BshFI	GGCC	2 cut(s)	268, 379
BsiHKAI	GWGCWC	1 cut(s)	510
BslFI	GGGAC	1 cut(s)	401
BslI	CCNNNNNNNGG	3 cut(s)	146, 264, 637
BsmFI	GGGAC	1 cut(s)	401
BsmI	GAATGC	2 cut(s)	494, 598
BsnI	GGCC	2 cut(s)	268, 379
Bsp119I	TTCGAA	1 cut(s)	231
Bsp1286I	GDGCHC	2 cut(s)	510, 654
Bsp143I	GATC	2 cut(s)	178, 430
Bsp19I	CCATGG	1 cut(s)	200
BspACI	CCGC	1 cut(s)	284
BspANI	GGCC	2 cut(s)	268, 379
BspFNI	CGCG	1 cut(s)	284
BspHI	TCATGA	1 cut(s)	340
BspOI	GCTAGC	1 cut(s)	248
BspQI	GCTCTTC	1 cut(s)	37
BspT104I	TTCGAA	1 cut(s)	231
BsrDI	GCAATG	1 cut(s)	681
BsrI	ACTGG	1 cut(s)	269
BssECI	CCNNGG	2 cut(s)	200, 680
BssMI	GATC	2 cut(s)	178, 430
BssT1I	CCWWGG	2 cut(s)	200, 680
Bst4CI	ACNGT	1 cut(s)	361
Bst6I	CTCTTC	2 cut(s)	37, 113
BstAPI	GCANNNNNTGC	1 cut(s)	329
BstBI	TTCGAA	1 cut(s)	231
BstC8I	GCNNGC	2 cut(s)	246, 540
BstDEI	CTNAG	1 cut(s)	182
BstDSI	CCRYGG	1 cut(s)	200
BstEII	GGTNACC	1 cut(s)	401
BstF5I	GGATG	1 cut(s)	493
BstFNI	CGCG	1 cut(s)	284
BstH2I	RGCGCY	1 cut(s)	301
BstHHI	GCGC	1 cut(s)	300
BstKTI	GATC	2 cut(s)	181, 433
BstMBI	GATC	2 cut(s)	178, 430
BstMWI	GCNNNNNNNGC	2 cut(s)	329, 535
BstPI	GGTNACC	1 cut(s)	401
BstSLI	GKGCMC	1 cut(s)	510
BstUI	CGCG	1 cut(s)	284
BstV1I	GCAGC	4 cut(s)	316, 434, 537, 733
BstV2I	GAAGAC	2 cut(s)	244, 346
BsuRI	GGCC	2 cut(s)	268, 379
BtgI	CCRYGG	1 cut(s)	200
BtsCI	GGATG	1 cut(s)	493
BtsIMutI	CAGTG	1 cut(s)	357
Cac8I	GCNNGC	2 cut(s)	246, 540
CciI	TCATGA	1 cut(s)	340
CfoI	GCGC	1 cut(s)	300
Cfr13I	GGNCC	1 cut(s)	221
CseI	GACGC	1 cut(s)	290
Csp6I	GTAC	2 cut(s)	316, 586
CviQI	GTAC	2 cut(s)	316, 586
DdeI	CTNAG	1 cut(s)	182
DpnI	GATC	2 cut(s)	180, 432
DpnII	GATC	2 cut(s)	178, 430
EaeI	YGGCCR	1 cut(s)	266
Eam1104I	CTCTTC	2 cut(s)	37, 113
EarI	CTCTTC	2 cut(s)	37, 113
Eco130I	CCWWGG	2 cut(s)	200, 680
Eco147I	AGGCCT	1 cut(s)	379
Eco24I	GRGCYC	1 cut(s)	654
Eco47I	GGWCC	1 cut(s)	221
Eco57I	CTGAAG	1 cut(s)	351
Eco91I	GGTNACC	1 cut(s)	401
EcoO65I	GGTNACC	1 cut(s)	401
EcoT14I	CCWWGG	2 cut(s)	200, 680
EcoT22I	ATGCAT	2 cut(s)	600, 738
EcoT38I	GRGCYC	1 cut(s)	654
ErhI	CCWWGG	2 cut(s)	200, 680
FalI	AAGNNNNNCTT	2 cut(s)	390, 422
FaqI	GGGAC	1 cut(s)	401
FauI	CCCGC	1 cut(s)	277
FbaI	TGATCA	1 cut(s)	430
Fnu4HI	GCNGC	4 cut(s)	330, 423, 551, 722
FokI	GGATG	1 cut(s)	500
FriOI	GRGCYC	1 cut(s)	654
Fsp4HI	GCNGC	4 cut(s)	330, 423, 551, 722
FspBI	CTAG	3 cut(s)	245, 455, 647
GlaI	GCGC	1 cut(s)	299
GluI	GCNGC	4 cut(s)	330, 423, 551, 722
HaeII	RGCGCY	1 cut(s)	301
HaeIII	GGCC	2 cut(s)	268, 379
HgaI	GACGC	1 cut(s)	290
HhaI	GCGC	1 cut(s)	300
Hin6I	GCGC	1 cut(s)	298
HinP1I	GCGC	1 cut(s)	298
HincII	GTYRAC	1 cut(s)	481
HindII	GTYRAC	1 cut(s)	481
HinfI	GANTC	3 cut(s)	82, 346, 697
HpaI	GTTAAC	1 cut(s)	481
HphI	GGTGA	3 cut(s)	164, 188, 616
Hpy166II	GTNNAC	2 cut(s)	481, 508
Hpy188I	TCNGA	2 cut(s)	370, 487
Hpy188III	TCNNGA	3 cut(s)	124, 341, 668
Hpy8I	GTNNAC	2 cut(s)	481, 508
HpyAV	CCTTC	3 cut(s)	234, 375, 392
HpyCH4III	ACNGT	1 cut(s)	361
HpyCH4V	TGCA	7 cut(s)	278, 332, 422, 508, 598, 613, 736
HpyF10VI	GCNNNNNNNGC	2 cut(s)	329, 535
HpyF3I	CTNAG	1 cut(s)	182
HspAI	GCGC	1 cut(s)	298
Ksp22I	TGATCA	1 cut(s)	430
KspAI	GTTAAC	1 cut(s)	481
Kzo9I	GATC	2 cut(s)	178, 430
LguI	GCTCTTC	1 cut(s)	37
LmnI	GCTCC	1 cut(s)	295
LpnPI	CCDG	1 cut(s)	282
Lsp1109I	GCAGC	4 cut(s)	316, 434, 537, 733
LweI	GCATC	2 cut(s)	178, 537
MaeI	CTAG	3 cut(s)	245, 455, 647
MaeIII	GTNAC	3 cut(s)	401, 565, 606
MalI	GATC	2 cut(s)	180, 432
MboI	GATC	2 cut(s)	178, 430
MboII	GAAGA	6 cut(s)	24, 30, 100, 244, 346, 556
MhlI	GDGCHC	2 cut(s)	510, 654
MlsI	TGGCCA	1 cut(s)	268
MluCI	AATT	4 cut(s)	167, 194, 445, 465
MluNI	TGGCCA	1 cut(s)	268
MnlI	CCTC	5 cut(s)	116, 369, 390, 632, 685
Mox20I	TGGCCA	1 cut(s)	268
Mph1103I	ATGCAT	2 cut(s)	600, 738
MscI	TGGCCA	1 cut(s)	268
MseI	TTAA	4 cut(s)	408, 444, 480, 708
Msp20I	TGGCCA	1 cut(s)	268
Mva1269I	GAATGC	2 cut(s)	494, 598
MvnI	CGCG	1 cut(s)	284
MwoI	GCNNNNNNNGC	2 cut(s)	329, 535
NcoI	CCATGG	1 cut(s)	200
NdeII	GATC	2 cut(s)	178, 430
NheI	GCTAGC	1 cut(s)	244
NmuCI	GTSAC	1 cut(s)	565
NsiI	ATGCAT	2 cut(s)	600, 738
NspV	TTCGAA	1 cut(s)	231
PagI	TCATGA	1 cut(s)	340
PceI	AGGCCT	1 cut(s)	379
PciSI	GCTCTTC	1 cut(s)	37
PctI	GAATGC	2 cut(s)	494, 598
PfeI	GAWTC	3 cut(s)	82, 346, 697
PflMI	CCANNNNNTGG	2 cut(s)	146, 264
PkrI	GCNGC	4 cut(s)	331, 424, 552, 723
PspEI	GGTNACC	1 cut(s)	401
PspPI	GGNCC	1 cut(s)	221
RsaI	GTAC	2 cut(s)	317, 587
RsaNI	GTAC	2 cut(s)	316, 586
SapI	GCTCTTC	1 cut(s)	37
SaqAI	TTAA	4 cut(s)	408, 444, 480, 708
SatI	GCNGC	4 cut(s)	330, 423, 551, 722
Sau3AI	GATC	2 cut(s)	178, 430
Sau96I	GGNCC	1 cut(s)	221
SduI	GDGCHC	2 cut(s)	510, 654
SetI	ASST	9 cut(s)	32, 62, 240, 246, 403, 408, 427, 666, 716
SfaNI	GCATC	2 cut(s)	178, 537
SfuI	TTCGAA	1 cut(s)	231
SinI	GGWCC	1 cut(s)	221
SmlI	CTYRAG	2 cut(s)	122, 239
SmoI	CTYRAG	2 cut(s)	122, 239
Sse9I	AATT	4 cut(s)	167, 194, 445, 465
SseBI	AGGCCT	1 cut(s)	379
SsiI	CCGC	1 cut(s)	284
SspMI	CTAG	3 cut(s)	245, 455, 647
StuI	AGGCCT	1 cut(s)	379
StyI	CCWWGG	2 cut(s)	200, 680
TaaI	ACNGT	1 cut(s)	361
TaqI	TCGA	2 cut(s)	231, 498
TaqII	GACCGA	1 cut(s)	209
TasI	AATT	4 cut(s)	167, 194, 445, 465
TfiI	GAWTC	3 cut(s)	82, 346, 697
Tru1I	TTAA	4 cut(s)	408, 444, 480, 708
Tru9I	TTAA	4 cut(s)	408, 444, 480, 708
TscAI	CASTG	1 cut(s)	364
TseFI	GTSAC	1 cut(s)	565
TseI	GCWGC	4 cut(s)	329, 422, 550, 721
Tsp45I	GTSAC	1 cut(s)	565
TspDTI	ATGAA	5 cut(s)	24, 37, 105, 338, 411
TspRI	CASTG	1 cut(s)	364
Van91I	CCANNNNNTGG	2 cut(s)	146, 264
VneI	GTGCAC	1 cut(s)	506
VpaK11BI	GGWCC	1 cut(s)	221
XapI	RAATTY	2 cut(s)	194, 465
XspI	CTAG	3 cut(s)	245, 455, 647
Zsp2I	ATGCAT	2 cut(s)	600, 738

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.