RLG00000033317

Glycosyl transferases group 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0014525
Physical Location & Seq
Forward (+)
25621166 .. 25621720
555 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000033317

Sequence Viewer

Length: 555 bp
ATGGGATTGAAACACCATACTTGCAAAAGCTCTTCATCTTCTAACTTCATGCCTATTAGATTCTCAACCATTCTTACTTTGATTCTACTCTTTACTTCCTTTTTCCACTTCCTTTCATCACTCAAGAACACCCAAGAACCATTTTTTGGGGGTGATGAGAACACTCAATTCAATGGTGATCTTCGAGATGCTAAATTCCCATGGAACAAACTCTGTTTTGGTCCCACATTCGAAAAGCTCAAGCTAGCCGTCTTCTCCAAAACATGGCCAGTTGGTGCAGACGCGGGTGGTATGGAGCGCCATGCTTCCACATTGTACCAAGCACTTGCTGCAAAGGGTCATGAGATTCATGTCTTCACTGTGCCTTCAGATAGGAGGCCTCATTGGGACATACATGAAGGTAACCTTCATGTTTACTTTGCAGCTAATGATCATGGCTCTGTTAATTGTTCGCTAGCATTTGAAATTTTCAATAAAGTTAACTCGGATGGGGCATTCGATTATGTGCACACCGAGTGTTTCGTTGCCTCATTGGCGCGCGAAGATGCTGCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glyco_trans_1_4 Glyco_transf_4 Glycos_transf_1

Protein Analysis

185

Amino Acids

20.62

Weight (kDa)

6.39

Isoelectric Point (pI)

33.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_4 PF13439 96 - 176 5.3e-07 Glycosyltransferase Family 4
Glyco_trans_4_4 PF13579 96 - 177 1e-05 Glycosyl transferase 4-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014525)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G73160
fragaria_vesca FvH4_3g18700
malus_domestica MD11G1259200.v1.1
prunus_persica Prupe.4G170700_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0031511
rosa_laevigata RLG00000033317 RLG00000033318
rosa_multiflora Rmu_sc0006344.1_g000008 Rmu_sc0009888.1_g000003
rosa_roxburghii Rroxscaffold_1G00048810
rosa_rugosa Rorug05G0126700
rosa_samantha Rh5AG219400 Rh5AG219500 Rh5BG218800 Rh5CG242400 Rh5DG224300
rosa_wichuraiana Rw5G020010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 146, 264
AccII CGCG 3 cut(s) 284, 538, 540
AciI CCGC 1 cut(s) 284
AcoI YGGCCR 1 cut(s) 266
AcsI RAATTY 2 cut(s) 194, 465
AcuI CTGAAG 1 cut(s) 351
AdeI CACNNNGTG 1 cut(s) 516
AfaI GTAC 1 cut(s) 317
AfiI CCNNNNNNNGG 2 cut(s) 146, 264
AgsI TTSAA 4 cut(s) 10, 172, 464, 472
AjuI GAANNNNNNNTTGG 2 cut(s) 129, 161
AluBI AGCT 4 cut(s) 30, 238, 244, 425
AluI AGCT 4 cut(s) 30, 238, 244, 425
Alw21I GWGCWC 1 cut(s) 510
Alw44I GTGCAC 1 cut(s) 506
AoxI GGCC 2 cut(s) 266, 377
ApaLI GTGCAC 1 cut(s) 506
ApeKI GCWGC 3 cut(s) 329, 422, 548
ApoI RAATTY 2 cut(s) 194, 465
AspLEI GCGC 3 cut(s) 300, 538, 540
AspS9I GGNCC 1 cut(s) 221
AsuHPI GGTGA 2 cut(s) 164, 188
AsuII TTCGAA 1 cut(s) 231
AsuNHI GCTAGC 2 cut(s) 244, 454
AvaII GGWCC 1 cut(s) 221
BaeGI GKGCMC 1 cut(s) 510
BalI TGGCCA 1 cut(s) 268
BbsI GAAGAC 2 cut(s) 244, 346
Bbv12I GWGCWC 1 cut(s) 510
BbvI GCAGC 3 cut(s) 316, 434, 535
BccI CCATC 1 cut(s) 482
BceAI ACGGC 1 cut(s) 233
BcgI CGANNNNNNTGC 1 cut(s) 530
BclI TGATCA 1 cut(s) 430
BfaI CTAG 2 cut(s) 245, 455
BfoI RGCGCY 1 cut(s) 301
BglI GCCNNNNNGGC 1 cut(s) 533
BisI GCNGC 3 cut(s) 330, 423, 549
BlsI GCNGC 3 cut(s) 331, 424, 550
Bme18I GGWCC 1 cut(s) 221
BmgT120I GGNCC 1 cut(s) 221
BmiI GGNNCC 1 cut(s) 223
BmsI GCATC 2 cut(s) 178, 535
BmtI GCTAGC 2 cut(s) 248, 458
BpiI GAAGAC 2 cut(s) 244, 346
Bpu14I TTCGAA 1 cut(s) 231
BpuEI CTTGAG 2 cut(s) 107, 224
BsaJI CCNNGG 1 cut(s) 200
Bsc4I CCNNNNNNNGG 2 cut(s) 146, 264
Bse1I ACTGG 1 cut(s) 269
BseDI CCNNGG 1 cut(s) 200
BseGI GGATG 1 cut(s) 493
BseLI CCNNNNNNNGG 2 cut(s) 146, 264
BseNI ACTGG 1 cut(s) 269
BsePI GCGCGC 1 cut(s) 536
BseSI GKGCMC 1 cut(s) 510
BseXI GCAGC 3 cut(s) 316, 434, 535
BsgI GTGCAG 1 cut(s) 297
Bsh1236I CGCG 3 cut(s) 284, 538, 540
BshFI GGCC 2 cut(s) 268, 379
BsiHKAI GWGCWC 1 cut(s) 510
BslFI GGGAC 2 cut(s) 207, 401
BslI CCNNNNNNNGG 2 cut(s) 146, 264
BsmFI GGGAC 2 cut(s) 207, 401
BsmI GAATGC 1 cut(s) 494
BsnI GGCC 2 cut(s) 268, 379
Bsp119I TTCGAA 1 cut(s) 231
Bsp1286I GDGCHC 1 cut(s) 510
Bsp143I GATC 2 cut(s) 178, 430
Bsp19I CCATGG 1 cut(s) 200
BspACI CCGC 1 cut(s) 284
BspANI GGCC 2 cut(s) 268, 379
BspFNI CGCG 3 cut(s) 284, 538, 540
BspHI TCATGA 1 cut(s) 340
BspLI GGNNCC 1 cut(s) 223
BspOI GCTAGC 2 cut(s) 248, 458
BspQI GCTCTTC 1 cut(s) 37
BspT104I TTCGAA 1 cut(s) 231
BsrI ACTGG 1 cut(s) 269
BssECI CCNNGG 1 cut(s) 200
BssHII GCGCGC 1 cut(s) 536
BssMI GATC 2 cut(s) 178, 430
BssT1I CCWWGG 1 cut(s) 200
Bst4CI ACNGT 1 cut(s) 361
Bst6I CTCTTC 1 cut(s) 37
BstAPI GCANNNNNTGC 1 cut(s) 329
BstBI TTCGAA 1 cut(s) 231
BstC8I GCNNGC 3 cut(s) 246, 456, 538
BstDSI CCRYGG 1 cut(s) 200
BstEII GGTNACC 1 cut(s) 401
BstF5I GGATG 1 cut(s) 493
BstFNI CGCG 3 cut(s) 284, 538, 540
BstH2I RGCGCY 1 cut(s) 301
BstHHI GCGC 3 cut(s) 300, 538, 540
BstKTI GATC 2 cut(s) 181, 433
BstMBI GATC 2 cut(s) 178, 430
BstMWI GCNNNNNNNGC 2 cut(s) 329, 533
BstPI GGTNACC 1 cut(s) 401
BstSLI GKGCMC 1 cut(s) 510
BstUI CGCG 3 cut(s) 284, 538, 540
BstV1I GCAGC 3 cut(s) 316, 434, 535
BstV2I GAAGAC 2 cut(s) 244, 346
BsuRI GGCC 2 cut(s) 268, 379
BtgI CCRYGG 1 cut(s) 200
BtsCI GGATG 1 cut(s) 493
BtsIMutI CAGTG 1 cut(s) 357
Cac8I GCNNGC 3 cut(s) 246, 456, 538
CciI TCATGA 1 cut(s) 340
CfoI GCGC 3 cut(s) 300, 538, 540
Cfr13I GGNCC 1 cut(s) 221
CseI GACGC 1 cut(s) 290
Csp6I GTAC 1 cut(s) 316
CviAII CATG 9 cut(s) 49, 201, 264, 302, 341, 350, 395, 410, 434
CviJI RGCY 8 cut(s) 30, 238, 244, 248, 268, 379, 425, 438
CviKI_1 RGCY 8 cut(s) 30, 238, 244, 248, 268, 379, 425, 438
CviQI GTAC 1 cut(s) 316
DpnI GATC 2 cut(s) 180, 432
DpnII GATC 2 cut(s) 178, 430
DraIII CACNNNGTG 1 cut(s) 516
EaeI YGGCCR 1 cut(s) 266
Eam1104I CTCTTC 1 cut(s) 37
EarI CTCTTC 1 cut(s) 37
Eco130I CCWWGG 1 cut(s) 200
Eco147I AGGCCT 1 cut(s) 379
Eco47I GGWCC 1 cut(s) 221
Eco57I CTGAAG 1 cut(s) 351
Eco91I GGTNACC 1 cut(s) 401
EcoO65I GGTNACC 1 cut(s) 401
EcoT14I CCWWGG 1 cut(s) 200
ErhI CCWWGG 1 cut(s) 200
FaeI CATG 9 cut(s) 52, 204, 267, 305, 344, 353, 398, 413, 437
FalI AAGNNNNNCTT 2 cut(s) 390, 422
FaqI GGGAC 2 cut(s) 207, 401
FatI CATG 9 cut(s) 48, 200, 263, 301, 340, 349, 394, 409, 433
FauI CCCGC 1 cut(s) 277
FbaI TGATCA 1 cut(s) 430
Fnu4HI GCNGC 3 cut(s) 330, 423, 549
FokI GGATG 1 cut(s) 500
Fsp4HI GCNGC 3 cut(s) 330, 423, 549
FspBI CTAG 2 cut(s) 245, 455
GlaI GCGC 3 cut(s) 299, 537, 539
GluI GCNGC 3 cut(s) 330, 423, 549
HaeII RGCGCY 1 cut(s) 301
HaeIII GGCC 2 cut(s) 268, 379
HgaI GACGC 1 cut(s) 290
HhaI GCGC 3 cut(s) 300, 538, 540
Hin1II CATG 9 cut(s) 52, 204, 267, 305, 344, 353, 398, 413, 437
Hin6I GCGC 3 cut(s) 298, 536, 538
HinP1I GCGC 3 cut(s) 298, 536, 538
HincII GTYRAC 1 cut(s) 481
HindII GTYRAC 1 cut(s) 481
HinfI GANTC 3 cut(s) 60, 82, 346
HpaI GTTAAC 1 cut(s) 481
HphI GGTGA 2 cut(s) 164, 188
Hpy166II GTNNAC 3 cut(s) 415, 481, 508
Hpy188I TCNGA 2 cut(s) 370, 487
Hpy188III TCNNGA 3 cut(s) 124, 185, 341
Hpy8I GTNNAC 3 cut(s) 415, 481, 508
HpyAV CCTTC 3 cut(s) 375, 392, 416
HpyCH4III ACNGT 1 cut(s) 361
HpyCH4V TGCA 5 cut(s) 24, 278, 332, 422, 508
HpyF10VI GCNNNNNNNGC 2 cut(s) 329, 533
Hsp92II CATG 9 cut(s) 52, 204, 267, 305, 344, 353, 398, 413, 437
HspAI GCGC 3 cut(s) 298, 536, 538
Ksp22I TGATCA 1 cut(s) 430
KspAI GTTAAC 1 cut(s) 481
Kzo9I GATC 2 cut(s) 178, 430
LguI GCTCTTC 1 cut(s) 37
LmnI GCTCC 1 cut(s) 295
LpnPI CCDG 1 cut(s) 282
Lsp1109I GCAGC 3 cut(s) 316, 434, 535
LweI GCATC 2 cut(s) 178, 535
MaeI CTAG 2 cut(s) 245, 455
MaeIII GTNAC 1 cut(s) 401
MalI GATC 2 cut(s) 180, 432
MboI GATC 2 cut(s) 178, 430
MboII GAAGA 6 cut(s) 24, 30, 173, 244, 346, 554
MhlI GDGCHC 1 cut(s) 510
MlsI TGGCCA 1 cut(s) 268
MluCI AATT 4 cut(s) 167, 194, 445, 465
MluNI TGGCCA 1 cut(s) 268
MnlI CCTC 3 cut(s) 369, 390, 538
Mox20I TGGCCA 1 cut(s) 268
MscI TGGCCA 1 cut(s) 268
MseI TTAA 2 cut(s) 444, 480
Msp20I TGGCCA 1 cut(s) 268
Mva1269I GAATGC 1 cut(s) 494
MvnI CGCG 3 cut(s) 284, 538, 540
MwoI GCNNNNNNNGC 2 cut(s) 329, 533
NcoI CCATGG 1 cut(s) 200
NdeII GATC 2 cut(s) 178, 430
NheI GCTAGC 2 cut(s) 244, 454
NlaIII CATG 9 cut(s) 52, 204, 267, 305, 344, 353, 398, 413, 437
NlaIV GGNNCC 1 cut(s) 223
NspV TTCGAA 1 cut(s) 231
PagI TCATGA 1 cut(s) 340
PauI GCGCGC 1 cut(s) 536
PceI AGGCCT 1 cut(s) 379
PciSI GCTCTTC 1 cut(s) 37
PctI GAATGC 1 cut(s) 494
PfeI GAWTC 3 cut(s) 60, 82, 346
PflMI CCANNNNNTGG 2 cut(s) 146, 264
PkrI GCNGC 3 cut(s) 331, 424, 550
PspEI GGTNACC 1 cut(s) 401
PspN4I GGNNCC 1 cut(s) 223
PspPI GGNCC 1 cut(s) 221
PteI GCGCGC 1 cut(s) 536
RsaI GTAC 1 cut(s) 317
RsaNI GTAC 1 cut(s) 316
SapI GCTCTTC 1 cut(s) 37
SaqAI TTAA 2 cut(s) 444, 480
SatI GCNGC 3 cut(s) 330, 423, 549
Sau3AI GATC 2 cut(s) 178, 430
Sau96I GGNCC 1 cut(s) 221
SduI GDGCHC 1 cut(s) 510
SetI ASST 6 cut(s) 32, 240, 246, 403, 408, 427
SfaNI GCATC 2 cut(s) 178, 535
SfuI TTCGAA 1 cut(s) 231
SinI GGWCC 1 cut(s) 221
SmlI CTYRAG 2 cut(s) 122, 239
SmoI CTYRAG 2 cut(s) 122, 239
Sse9I AATT 4 cut(s) 167, 194, 445, 465
SseBI AGGCCT 1 cut(s) 379
SsiI CCGC 1 cut(s) 284
SspMI CTAG 2 cut(s) 245, 455
StuI AGGCCT 1 cut(s) 379
StyI CCWWGG 1 cut(s) 200
TaaI ACNGT 1 cut(s) 361
TaqI TCGA 3 cut(s) 184, 231, 498
TasI AATT 4 cut(s) 167, 194, 445, 465
TfiI GAWTC 3 cut(s) 60, 82, 346
Tru1I TTAA 2 cut(s) 444, 480
Tru9I TTAA 2 cut(s) 444, 480
TscAI CASTG 1 cut(s) 364
TseI GCWGC 3 cut(s) 329, 422, 548
TspDTI ATGAA 6 cut(s) 24, 37, 105, 338, 398, 411
TspRI CASTG 1 cut(s) 364
Van91I CCANNNNNTGG 2 cut(s) 146, 264
VneI GTGCAC 1 cut(s) 506
VpaK11BI GGWCC 1 cut(s) 221
XapI RAATTY 2 cut(s) 194, 465
XspI CTAG 2 cut(s) 245, 455
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.