Proteasome-associated protein ECM29 homolog
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G26780 AT2G26780 |
| fragaria_vesca | FvH4_3g28920 FvH4_3g28920 FvH4_3g28920 FvH4_3g28920 |
| malus_domestica | MD03G1157000.v1.1 MD12G1083300.v1.1 |
| prunus_persica | Prupe.4G270300_v2.0.a1 Prupe.4G270300_v2.0.a1 Prupe.4G270300_v2.0.a1 Prupe.4G270300_v2.0.a1 |
| pyrus_communis | pycom5153684g00070 |
| rosa_chinensis | RchiOBHm_Chr5g0051871 RchiOBHm_Chr5g0051931 |
| rosa_laevigata | RLG00000034862 |
| rosa_multiflora | Rmu_sc0003764.1_g000019 Rmu_sc0010452.1_g000006 |
| rosa_roxburghii | Rroxscaffold_1G00027420 |
| rosa_rugosa | Rorug05G0276500 |
| rosa_samantha | Rh5AG348300 Rh5BG358900 Rh5BG359500 Rh5CG384500 Rh5DG374400 |
| rosa_wichuraiana | Rw0G005060 Rw5G032870 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 3135 |
| AarI | CACCTGC | 1 cut(s) | 2176 |
| Acc36I | ACCTGC | 1 cut(s) | 2176 |
| Acc65I | GGTACC | 1 cut(s) | 3273 |
| AccB1I | GGYRCC | 1 cut(s) | 3273 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 1616, 3646 |
| AccI | GTMKAC | 1 cut(s) | 747 |
| AccII | CGCG | 1 cut(s) | 2446 |
| AccIII | TCCGGA | 1 cut(s) | 3705 |
| AciI | CCGC | 8 cut(s) | 5, 67, 168, 175, 3271, 3767, 4955, 5163 |
| AclI | AACGTT | 1 cut(s) | 2755 |
| AcoI | YGGCCR | 2 cut(s) | 2413, 2800 |
| AcuI | CTGAAG | 8 cut(s) | 389, 1151, 1304, 1785, 2232, 3045, 5114, 5256 |
| AcvI | CACGTG | 2 cut(s) | 205, 4996 |
| AfaI | GTAC | 8 cut(s) | 862, 1428, 2197, 3275, 4451, 5303, 5337, 5366 |
| AfiI | CCNNNNNNNGG | 9 cut(s) | 181, 1029, 1616, 1848, 2491, 2901, 3414, 3526, 3646 |
| AflIII | ACRYGT | 1 cut(s) | 77 |
| AhlI | ACTAGT | 1 cut(s) | 4057 |
| AjiI | CACGTC | 2 cut(s) | 80, 5263 |
| AjnI | CCWGG | 6 cut(s) | 592, 1868, 3459, 4524, 4612, 5253 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 2933, 2965, 4883, 4915 |
| AleI | CACNNNNGTG | 3 cut(s) | 462, 2203, 5265 |
| Alw21I | GWGCWC | 2 cut(s) | 874, 1360 |
| Alw26I | GTCTC | 6 cut(s) | 1286, 1379, 2163, 2225, 3536, 3616 |
| AlwNI | CAGNNNCTG | 3 cut(s) | 1600, 2558, 2890 |
| Aor13HI | TCCGGA | 1 cut(s) | 3705 |
| ApaI | GGGCCC | 1 cut(s) | 1109 |
| ArsI | GACNNNNNNTTYG | 6 cut(s) | 882, 914, 1570, 1602, 2548, 2580 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 783, 3030 |
| Asp718I | GGTACC | 1 cut(s) | 3273 |
| AspLEI | GCGC | 2 cut(s) | 1269, 3420 |
| AspS9I | GGNCC | 7 cut(s) | 64, 706, 1105, 1106, 2487, 3370, 3820 |
| AsuC2I | CCSGG | 1 cut(s) | 3409 |
| AsuHPI | GGTGA | 9 cut(s) | 307, 461, 1048, 2384, 2876, 2939, 3062, 4568, 5396 |
| AsuII | TTCGAA | 2 cut(s) | 2315, 3550 |
| AsuNHI | GCTAGC | 1 cut(s) | 3736 |
| AvaII | GGWCC | 4 cut(s) | 64, 2487, 3370, 3820 |
| AxyI | CCTNAGG | 1 cut(s) | 2266 |
| BaeGI | GKGCMC | 1 cut(s) | 1109 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 3609, 3642 |
| BalI | TGGCCA | 2 cut(s) | 2415, 2802 |
| BamHI | GGATCC | 1 cut(s) | 3404 |
| BanI | GGYRCC | 1 cut(s) | 3273 |
| BanII | GRGCYC | 3 cut(s) | 874, 1109, 1360 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1539, 1571 |
| BbrPI | CACGTG | 2 cut(s) | 205, 4996 |
| BbsI | GAAGAC | 4 cut(s) | 18, 1791, 3024, 4560 |
| Bbv12I | GWGCWC | 2 cut(s) | 874, 1360 |
| BccI | CCATC | 5 cut(s) | 319, 1369, 1440, 1565, 3106 |
| BceAI | ACGGC | 2 cut(s) | 155, 3646 |
| BcgI | CGANNNNNNTGC | 8 cut(s) | 1847, 1881, 4124, 4158, 4214, 4241, 4248, 4275 |
| BciT130I | CCWGG | 6 cut(s) | 594, 1870, 3461, 4526, 4614, 5255 |
| BciVI | GTATCC | 2 cut(s) | 1975, 3713 |
| BclI | TGATCA | 3 cut(s) | 1087, 3475, 5289 |
| BcnI | CCSGG | 1 cut(s) | 3409 |
| BcoDI | GTCTC | 6 cut(s) | 1286, 1379, 2163, 2225, 3536, 3616 |
| BcuI | ACTAGT | 1 cut(s) | 4057 |
| BfaI | CTAG | 7 cut(s) | 894, 1628, 1715, 1826, 2243, 3737, 4058 |
| BfmI | CTRYAG | 3 cut(s) | 744, 1995, 2235 |
| BfoI | RGCGCY | 1 cut(s) | 3421 |
| BfuAI | ACCTGC | 1 cut(s) | 2176 |
| BfuI | GTATCC | 2 cut(s) | 1975, 3713 |
| BglII | AGATCT | 1 cut(s) | 3124 |
| BlpI | GCTNAGC | 1 cut(s) | 2109 |
| Bme1390I | CCNGG | 7 cut(s) | 594, 1870, 3409, 3461, 4526, 4614, 5255 |
| Bme18I | GGWCC | 4 cut(s) | 64, 2487, 3370, 3820 |
| BmgBI | CACGTC | 2 cut(s) | 80, 5263 |
| BmgT120I | GGNCC | 7 cut(s) | 64, 706, 1105, 1106, 2487, 3370, 3820 |
| BmiI | GGNNCC | 6 cut(s) | 708, 808, 1107, 3275, 3406, 3981 |
| BmrFI | CCNGG | 7 cut(s) | 594, 1870, 3409, 3461, 4526, 4614, 5255 |
| BmtI | GCTAGC | 1 cut(s) | 3740 |
| BpiI | GAAGAC | 4 cut(s) | 18, 1791, 3024, 4560 |
| BplI | GAGNNNNNCTC | 8 cut(s) | 443, 475, 2879, 2911, 3057, 3089, 4002, 4034 |
| BpmI | CTGGAG | 5 cut(s) | 825, 888, 1403, 4029, 4427 |
| Bpu10I | CCTNAGC | 2 cut(s) | 711, 2096 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 2109 |
| Bpu14I | TTCGAA | 2 cut(s) | 2315, 3550 |
| BpuEI | CTTGAG | 9 cut(s) | 209, 445, 1392, 2488, 3836, 3910, 4248, 4345, 5136 |
| BpuMI | CCSGG | 1 cut(s) | 3409 |
| BsaAI | YACGTR | 3 cut(s) | 205, 3081, 4996 |
| BsaBI | GATNNNNATC | 2 cut(s) | 3758, 4495 |
| BsaI | GGTCTC | 1 cut(s) | 1286 |
| BsaWI | WCCGGW | 3 cut(s) | 383, 3705, 4120 |
| Bsc4I | CCNNNNNNNGG | 9 cut(s) | 181, 1029, 1616, 1848, 2491, 2901, 3414, 3526, 3646 |
| Bse118I | RCCGGY | 2 cut(s) | 948, 2484 |
| Bse1I | ACTGG | 6 cut(s) | 2552, 2983, 3625, 4167, 4346, 4444 |
| Bse21I | CCTNAGG | 1 cut(s) | 2266 |
| Bse3DI | GCAATG | 3 cut(s) | 336, 2291, 5049 |
| Bse8I | GATNNNNATC | 2 cut(s) | 3758, 4495 |
| BseAI | TCCGGA | 1 cut(s) | 3705 |
| BseBI | CCWGG | 6 cut(s) | 594, 1870, 3461, 4526, 4614, 5255 |
| BseJI | GATNNNNATC | 2 cut(s) | 3758, 4495 |
| BseLI | CCNNNNNNNGG | 9 cut(s) | 181, 1029, 1616, 1848, 2491, 2901, 3414, 3526, 3646 |
| BseMI | GCAATG | 3 cut(s) | 336, 2291, 5049 |
| BseNI | ACTGG | 6 cut(s) | 2552, 2983, 3625, 4167, 4346, 4444 |
| BseRI | GAGGAG | 1 cut(s) | 154 |
| BseSI | GKGCMC | 1 cut(s) | 1109 |
| BseYI | CCCAGC | 1 cut(s) | 1296 |
| BsgI | GTGCAG | 5 cut(s) | 2148, 3320, 3768, 4254, 5079 |
| Bsh1236I | CGCG | 1 cut(s) | 2446 |
| BshNI | GGYRCC | 1 cut(s) | 3273 |
| BsiHKAI | GWGCWC | 2 cut(s) | 874, 1360 |
| BsiSI | CCGG | 6 cut(s) | 384, 949, 2485, 3409, 3706, 4121 |
| BslFI | GGGAC | 3 cut(s) | 1193, 3129, 5263 |
| BslI | CCNNNNNNNGG | 9 cut(s) | 181, 1029, 1616, 1848, 2491, 2901, 3414, 3526, 3646 |
| BsmAI | GTCTC | 6 cut(s) | 1286, 1379, 2163, 2225, 3536, 3616 |
| BsmFI | GGGAC | 3 cut(s) | 1193, 3129, 5263 |
| BsmI | GAATGC | 3 cut(s) | 590, 3515, 5234 |
| Bso31I | GGTCTC | 1 cut(s) | 1286 |
| Bsp119I | TTCGAA | 2 cut(s) | 2315, 3550 |
| Bsp120I | GGGCCC | 1 cut(s) | 1105 |
| Bsp1286I | GDGCHC | 3 cut(s) | 874, 1109, 1360 |
| Bsp13I | TCCGGA | 1 cut(s) | 3705 |
| Bsp1407I | TGTACA | 1 cut(s) | 5335 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 2109 |
| Bsp19I | CCATGG | 3 cut(s) | 2595, 3525, 4302 |
| BspACI | CCGC | 8 cut(s) | 5, 67, 168, 175, 3271, 3767, 4955, 5163 |
| BspEI | TCCGGA | 1 cut(s) | 3705 |
| BspFNI | CGCG | 1 cut(s) | 2446 |
| BspLI | GGNNCC | 6 cut(s) | 708, 808, 1107, 3275, 3406, 3981 |
| BspMAI | CTGCAG | 2 cut(s) | 1999, 2239 |
| BspMI | ACCTGC | 1 cut(s) | 2176 |
| BspOI | GCTAGC | 1 cut(s) | 3740 |
| BspQI | GCTCTTC | 2 cut(s) | 774, 4407 |
| BspT104I | TTCGAA | 2 cut(s) | 2315, 3550 |
| BspT107I | GGYRCC | 1 cut(s) | 3273 |
| BspTNI | GGTCTC | 1 cut(s) | 1286 |
| BsrDI | GCAATG | 3 cut(s) | 336, 2291, 5049 |
| BsrFI | RCCGGY | 2 cut(s) | 948, 2484 |
| BsrGI | TGTACA | 1 cut(s) | 5335 |
| BsrI | ACTGG | 6 cut(s) | 2552, 2983, 3625, 4167, 4346, 4444 |
| BssAI | RCCGGY | 2 cut(s) | 948, 2484 |
| BssT1I | CCWWGG | 8 cut(s) | 438, 1878, 2490, 2595, 3260, 3525, 3823, 4302 |
| Bst2UI | CCWGG | 6 cut(s) | 594, 1870, 3461, 4526, 4614, 5255 |
| Bst6I | CTCTTC | 5 cut(s) | 408, 774, 2984, 4395, 4407 |
| BstAPI | GCANNNNNTGC | 8 cut(s) | 585, 914, 2126, 3227, 3521, 3746, 3755, 4658 |
| BstAUI | TGTACA | 1 cut(s) | 5335 |
| BstBAI | YACGTR | 3 cut(s) | 205, 3081, 4996 |
| BstBI | TTCGAA | 2 cut(s) | 2315, 3550 |
| BstDSI | CCRYGG | 4 cut(s) | 2595, 3525, 4302, 5075 |
| BstFNI | CGCG | 1 cut(s) | 2446 |
| BstH2I | RGCGCY | 1 cut(s) | 3421 |
| BstHHI | GCGC | 2 cut(s) | 1269, 3420 |
| BstMAI | GTCTC | 6 cut(s) | 1286, 1379, 2163, 2225, 3536, 3616 |
| BstNI | CCWGG | 6 cut(s) | 594, 1870, 3461, 4526, 4614, 5255 |
| BstNSI | RCATGY | 9 cut(s) | 1835, 1868, 2960, 3796, 3851, 4196, 4652, 4746, 5045 |
| BstSCI | CCNGG | 7 cut(s) | 592, 1868, 3407, 3459, 4524, 4612, 5253 |
| BstSFI | CTRYAG | 3 cut(s) | 744, 1995, 2235 |
| BstSLI | GKGCMC | 1 cut(s) | 1109 |
| BstUI | CGCG | 1 cut(s) | 2446 |
| BstV2I | GAAGAC | 4 cut(s) | 18, 1791, 3024, 4560 |
| BstX2I | RGATCY | 8 cut(s) | 675, 1378, 1597, 1898, 3124, 3145, 3404, 3934 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 445 |
| BstYI | RGATCY | 8 cut(s) | 675, 1378, 1597, 1898, 3124, 3145, 3404, 3934 |
| Bsu36I | CCTNAGG | 1 cut(s) | 2266 |
| BsuI | GTATCC | 2 cut(s) | 1975, 3713 |
| BtgI | CCRYGG | 4 cut(s) | 2595, 3525, 4302, 5075 |
| BtrI | CACGTC | 2 cut(s) | 80, 5263 |
| BtsI | GCAGTG | 2 cut(s) | 995, 1341 |
| BveI | ACCTGC | 1 cut(s) | 2176 |
| CaiI | CAGNNNCTG | 3 cut(s) | 1600, 2558, 2890 |
| CfoI | GCGC | 2 cut(s) | 1269, 3420 |
| Cfr10I | RCCGGY | 2 cut(s) | 948, 2484 |
| Cfr13I | GGNCC | 7 cut(s) | 64, 706, 1105, 1106, 2487, 3370, 3820 |
| CseI | GACGC | 1 cut(s) | 2435 |
| Csp6I | GTAC | 8 cut(s) | 861, 1427, 2196, 3274, 4450, 5302, 5336, 5365 |
| CviQI | GTAC | 8 cut(s) | 861, 1427, 2196, 3274, 4450, 5302, 5336, 5365 |
| DraI | TTTAAA | 3 cut(s) | 1072, 3171, 4188 |
| EaeI | YGGCCR | 2 cut(s) | 2413, 2800 |
| Eam1104I | CTCTTC | 5 cut(s) | 408, 774, 2984, 4395, 4407 |
| EarI | CTCTTC | 5 cut(s) | 408, 774, 2984, 4395, 4407 |
| EciI | GGCGGA | 2 cut(s) | 20, 157 |
| Ecl136II | GAGCTC | 2 cut(s) | 872, 1358 |
| Eco130I | CCWWGG | 8 cut(s) | 438, 1878, 2490, 2595, 3260, 3525, 3823, 4302 |
| Eco147I | AGGCCT | 1 cut(s) | 1551 |
| Eco24I | GRGCYC | 3 cut(s) | 874, 1109, 1360 |
| Eco31I | GGTCTC | 1 cut(s) | 1286 |
| Eco32I | GATATC | 1 cut(s) | 4328 |
| Eco47I | GGWCC | 4 cut(s) | 64, 2487, 3370, 3820 |
| Eco53kI | GAGCTC | 2 cut(s) | 872, 1358 |
| Eco57I | CTGAAG | 8 cut(s) | 389, 1151, 1304, 1785, 2232, 3045, 5114, 5256 |
| Eco72I | CACGTG | 2 cut(s) | 205, 4996 |
| Eco81I | CCTNAGG | 1 cut(s) | 2266 |
| EcoICRI | GAGCTC | 2 cut(s) | 872, 1358 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1106 |
| EcoRI | GAATTC | 3 cut(s) | 1052, 1125, 2317 |
| EcoRII | CCWGG | 6 cut(s) | 592, 1868, 3459, 4524, 4612, 5253 |
| EcoRV | GATATC | 1 cut(s) | 4328 |
| EcoT14I | CCWWGG | 8 cut(s) | 438, 1878, 2490, 2595, 3260, 3525, 3823, 4302 |
| EcoT22I | ATGCAT | 3 cut(s) | 3944, 5043, 5234 |
| EcoT38I | GRGCYC | 3 cut(s) | 874, 1109, 1360 |
| ErhI | CCWWGG | 8 cut(s) | 438, 1878, 2490, 2595, 3260, 3525, 3823, 4302 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 915, 947, 2933, 2965 |
| FaqI | GGGAC | 3 cut(s) | 1193, 3129, 5263 |
| FauI | CCCGC | 1 cut(s) | 5170 |
| FauNDI | CATATG | 2 cut(s) | 2418, 3320 |
| FbaI | TGATCA | 3 cut(s) | 1087, 3475, 5289 |
| FblI | GTMKAC | 1 cut(s) | 747 |
| FriOI | GRGCYC | 3 cut(s) | 874, 1109, 1360 |
| FspBI | CTAG | 7 cut(s) | 894, 1628, 1715, 1826, 2243, 3737, 4058 |
| GlaI | GCGC | 2 cut(s) | 1268, 3419 |
| GsaI | CCCAGC | 1 cut(s) | 1300 |
| GsuI | CTGGAG | 5 cut(s) | 825, 888, 1403, 4029, 4427 |
| HaeII | RGCGCY | 1 cut(s) | 3421 |
| HapII | CCGG | 6 cut(s) | 384, 949, 2485, 3409, 3706, 4121 |
| HgaI | GACGC | 1 cut(s) | 2435 |
| HhaI | GCGC | 2 cut(s) | 1269, 3420 |
| Hin6I | GCGC | 2 cut(s) | 1267, 3418 |
| HinP1I | GCGC | 2 cut(s) | 1267, 3418 |
| HincII | GTYRAC | 3 cut(s) | 1975, 2968, 3697 |
| HindII | GTYRAC | 3 cut(s) | 1975, 2968, 3697 |
| HindIII | AAGCTT | 3 cut(s) | 125, 3162, 3878 |
| HpaI | GTTAAC | 1 cut(s) | 2968 |
| HpaII | CCGG | 6 cut(s) | 384, 949, 2485, 3409, 3706, 4121 |
| HphI | GGTGA | 9 cut(s) | 307, 461, 1048, 2384, 2876, 2939, 3062, 4568, 5396 |
| Hpy99I | CGWCG | 4 cut(s) | 22, 25, 98, 4229 |
| HspAI | GCGC | 2 cut(s) | 1267, 3418 |
| Kpn2I | TCCGGA | 1 cut(s) | 3705 |
| KpnI | GGTACC | 1 cut(s) | 3277 |
| Ksp22I | TGATCA | 3 cut(s) | 1087, 3475, 5289 |
| KspAI | GTTAAC | 1 cut(s) | 2968 |
| LguI | GCTCTTC | 2 cut(s) | 774, 4407 |
| MaeI | CTAG | 7 cut(s) | 894, 1628, 1715, 1826, 2243, 3737, 4058 |
| MaeIII | GTNAC | 9 cut(s) | 200, 455, 622, 898, 1134, 1168, 2140, 2554, 3327 |
| MfeI | CAATTG | 5 cut(s) | 1206, 1893, 3900, 3974, 4179 |
| MflI | RGATCY | 8 cut(s) | 675, 1378, 1597, 1898, 3124, 3145, 3404, 3934 |
| MhlI | GDGCHC | 3 cut(s) | 874, 1109, 1360 |
| MlsI | TGGCCA | 2 cut(s) | 2415, 2802 |
| MluNI | TGGCCA | 2 cut(s) | 2415, 2802 |
| MmeI | TCCRAC | 4 cut(s) | 18, 133, 3841, 5338 |
| Mox20I | TGGCCA | 2 cut(s) | 2415, 2802 |
| Mph1103I | ATGCAT | 3 cut(s) | 3944, 5043, 5234 |
| MroI | TCCGGA | 1 cut(s) | 3705 |
| MroXI | GAANNNNTTC | 2 cut(s) | 783, 3030 |
| MscI | TGGCCA | 2 cut(s) | 2415, 2802 |
| Msp20I | TGGCCA | 2 cut(s) | 2415, 2802 |
| MspA1I | CMGCKG | 2 cut(s) | 1511, 1670 |
| MspI | CCGG | 6 cut(s) | 384, 949, 2485, 3409, 3706, 4121 |
| MspR9I | CCNGG | 7 cut(s) | 594, 1870, 3409, 3461, 4526, 4614, 5255 |
| MssI | GTTTAAAC | 1 cut(s) | 1072 |
| MunI | CAATTG | 5 cut(s) | 1206, 1893, 3900, 3974, 4179 |
| Mva1269I | GAATGC | 3 cut(s) | 590, 3515, 5234 |
| MvaI | CCWGG | 6 cut(s) | 594, 1870, 3461, 4526, 4614, 5255 |
| MvnI | CGCG | 1 cut(s) | 2446 |
| NciI | CCSGG | 1 cut(s) | 3409 |
| NcoI | CCATGG | 3 cut(s) | 2595, 3525, 4302 |
| NdeI | CATATG | 2 cut(s) | 2418, 3320 |
| NheI | GCTAGC | 1 cut(s) | 3736 |
| NlaIV | GGNNCC | 6 cut(s) | 708, 808, 1107, 3275, 3406, 3981 |
| NmeAIII | GCCGAG | 1 cut(s) | 2695 |
| NmuCI | GTSAC | 6 cut(s) | 200, 455, 898, 1134, 2554, 3327 |
| NsiI | ATGCAT | 3 cut(s) | 3944, 5043, 5234 |
| NspI | RCATGY | 9 cut(s) | 1835, 1868, 2960, 3796, 3851, 4196, 4652, 4746, 5045 |
| NspV | TTCGAA | 2 cut(s) | 2315, 3550 |
| OliI | CACNNNNGTG | 3 cut(s) | 462, 2203, 5265 |
| PaeI | GCATGC | 6 cut(s) | 1868, 2960, 3796, 3851, 4196, 4746 |
| PaqCI | CACCTGC | 1 cut(s) | 2176 |
| PceI | AGGCCT | 1 cut(s) | 1551 |
| PciSI | GCTCTTC | 2 cut(s) | 774, 4407 |
| PctI | GAATGC | 3 cut(s) | 590, 3515, 5234 |
| PdmI | GAANNNNTTC | 2 cut(s) | 783, 3030 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 1616, 3646 |
| PmaCI | CACGTG | 2 cut(s) | 205, 4996 |
| PmeI | GTTTAAAC | 1 cut(s) | 1072 |
| PmlI | CACGTG | 2 cut(s) | 205, 4996 |
| Ppu21I | YACGTR | 3 cut(s) | 205, 3081, 4996 |
| PsiI | TTATAA | 1 cut(s) | 3135 |
| Psp124BI | GAGCTC | 2 cut(s) | 874, 1360 |
| Psp1406I | AACGTT | 1 cut(s) | 2755 |
| Psp6I | CCWGG | 6 cut(s) | 592, 1868, 3459, 4524, 4612, 5253 |
| PspCI | CACGTG | 2 cut(s) | 205, 4996 |
| PspFI | CCCAGC | 1 cut(s) | 1296 |
| PspGI | CCWGG | 6 cut(s) | 592, 1868, 3459, 4524, 4612, 5253 |
| PspN4I | GGNNCC | 6 cut(s) | 708, 808, 1107, 3275, 3406, 3981 |
| PspOMI | GGGCCC | 1 cut(s) | 1105 |
| PspPI | GGNCC | 7 cut(s) | 64, 706, 1105, 1106, 2487, 3370, 3820 |
| PstI | CTGCAG | 2 cut(s) | 1999, 2239 |
| PstNI | CAGNNNCTG | 3 cut(s) | 1600, 2558, 2890 |
| PsuI | RGATCY | 8 cut(s) | 675, 1378, 1597, 1898, 3124, 3145, 3404, 3934 |
| PvuII | CAGCTG | 2 cut(s) | 1511, 1670 |
| RsaI | GTAC | 8 cut(s) | 862, 1428, 2197, 3275, 4451, 5303, 5337, 5366 |
| RsaNI | GTAC | 8 cut(s) | 861, 1427, 2196, 3274, 4450, 5302, 5336, 5365 |
| SacI | GAGCTC | 2 cut(s) | 874, 1360 |
| SapI | GCTCTTC | 2 cut(s) | 774, 4407 |
| Sau96I | GGNCC | 7 cut(s) | 64, 706, 1105, 1106, 2487, 3370, 3820 |
| ScrFI | CCNGG | 7 cut(s) | 594, 1870, 3409, 3461, 4526, 4614, 5255 |
| SduI | GDGCHC | 3 cut(s) | 874, 1109, 1360 |
| SfcI | CTRYAG | 3 cut(s) | 744, 1995, 2235 |
| SfuI | TTCGAA | 2 cut(s) | 2315, 3550 |
| SinI | GGWCC | 4 cut(s) | 64, 2487, 3370, 3820 |
| SmlI | CTYRAG | 9 cut(s) | 188, 460, 1407, 2467, 3815, 3889, 4263, 4360, 5151 |
| SmoI | CTYRAG | 9 cut(s) | 188, 460, 1407, 2467, 3815, 3889, 4263, 4360, 5151 |
| SpeI | ACTAGT | 1 cut(s) | 4057 |
| SphI | GCATGC | 6 cut(s) | 1868, 2960, 3796, 3851, 4196, 4746 |
| SseBI | AGGCCT | 1 cut(s) | 1551 |
| SsiI | CCGC | 8 cut(s) | 5, 67, 168, 175, 3271, 3767, 4955, 5163 |
| SspI | AATATT | 1 cut(s) | 2455 |
| SspMI | CTAG | 7 cut(s) | 894, 1628, 1715, 1826, 2243, 3737, 4058 |
| SstI | GAGCTC | 2 cut(s) | 874, 1360 |
| StuI | AGGCCT | 1 cut(s) | 1551 |
| StyD4I | CCNGG | 7 cut(s) | 592, 1868, 3407, 3459, 4524, 4612, 5253 |
| StyI | CCWWGG | 8 cut(s) | 438, 1878, 2490, 2595, 3260, 3525, 3823, 4302 |
| TatI | WGTACW | 3 cut(s) | 2195, 4449, 5335 |
| TseFI | GTSAC | 6 cut(s) | 200, 455, 898, 1134, 2554, 3327 |
| Tsp45I | GTSAC | 6 cut(s) | 200, 455, 898, 1134, 2554, 3327 |
| TspGWI | ACGGA | 4 cut(s) | 3509, 3752, 4833, 5064 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 1616, 3646 |
| VpaK11BI | GGWCC | 4 cut(s) | 64, 2487, 3370, 3820 |
| XbaI | TCTAGA | 2 cut(s) | 893, 1825 |
| XceI | RCATGY | 9 cut(s) | 1835, 1868, 2960, 3796, 3851, 4196, 4652, 4746, 5045 |
| XmiI | GTMKAC | 1 cut(s) | 747 |
| XmnI | GAANNNNTTC | 2 cut(s) | 783, 3030 |
| XspI | CTAG | 7 cut(s) | 894, 1628, 1715, 1826, 2243, 3737, 4058 |
| Zsp2I | ATGCAT | 3 cut(s) | 3944, 5043, 5234 |