Rorug05G0276500

Proteasome-associated protein ECM29 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0006358
Physical Location & Seq
Reverse (-)
31254960 .. 31264262
9303 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0276500.1

Sequence Viewer

Length: 822 bp
ATGAAGAGACTGGTGGGGAGAAAAGCTCTGCGATTTGCTCGCATTACAGAATATTCAACATATACCATAGAATTGGAATTCCATGCTTTACACAAAATTTGTGGCAATTTCGTGGGTCTTGTTGCAAATACAGAAGGAACATCGAAAATTTTGGAGAAGGATGTAGGACAGAAGTCGAGTCGTCTCGAAGTTGATGTCAATGAAGATGGTTTTGGTTCCGAACTGATATCTTGTGTAAGAATTGTTACGTGTTTCGTTACGATGATGGTTACAACTTTGATATGGGCTTTGATTATGCTTGTGCTCCTACCTTGGCCTTATGAGAGGATTAGGCAAGGAAATGTGTATGGACATGTTACTGGTAGATTGATGGTCATATGGTATCCCCTATTTGGACAACTTTATGTACTGGCCAACCATCTTCGCATAGATCGCTCCAATCCAACAGCAGCCATTGAATCTCTGAAAGAGGCAGTCGTGAGAAAAAAACTTTCTTTGATCATATTTCCTGAGGGCACCAGGTCAGCGGATGGAAGACTACTCCCTTTTAAAAAGGGCTTTATTCATCTGGCATTACAAACAGGCCTCCCAATAGTTCCCATTGTCCTTATAGGTACCCATCGAGCATGGAGGAAGGGTAGCTTACGCGTTCGACCAACACCTTTAACGATAAAGTATCTTTCTCCAATAAGCACTGATGATTGGACAGCTGACAAAATTGATGAATACATTAAAATGTTACATGACTTGTATGTCCAACACCTCCCAGACTCACAGAGGCCTCTTGCATTAGCAGAATCCACAAATGGTACCAAATCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ecm29

Protein Analysis

273

Amino Acids

30.9

Weight (kDa)

9.55

Isoelectric Point (pI)

26.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Acyltransferase PF01553 118 - 203 1.7e-18 Acyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 752
Acc65I GGTACC 2 cut(s) 614, 809
AccB1I GGYRCC 3 cut(s) 515, 614, 809
AccII CGCG 1 cut(s) 648
AciI CCGC 1 cut(s) 527
AcoI YGGCCR 1 cut(s) 411
AcsI RAATTY 3 cut(s) 77, 96, 147
AfaI GTAC 3 cut(s) 408, 616, 811
AfiI CCNNNNNNNGG 1 cut(s) 392
AflIII ACRYGT 3 cut(s) 248, 352, 646
AgsI TTSAA 2 cut(s) 57, 458
AjnI CCWGG 1 cut(s) 518
AjuI GAANNNNNNNTTGG 2 cut(s) 195, 227
AluBI AGCT 3 cut(s) 26, 642, 710
AluI AGCT 3 cut(s) 26, 642, 710
Alw21I GWGCWC 1 cut(s) 306
Alw26I GTCTC 1 cut(s) 188
AoxI GGCC 4 cut(s) 314, 411, 583, 779
ApeKI GCWGC 1 cut(s) 449
ApoI RAATTY 3 cut(s) 77, 96, 147
ArsI GACNNNNNNTTYG 2 cut(s) 180, 212
Asp718I GGTACC 2 cut(s) 614, 809
AxyI CCTNAGG 1 cut(s) 510
BaeGI GKGCMC 1 cut(s) 518
BalI TGGCCA 1 cut(s) 413
BanI GGYRCC 3 cut(s) 515, 614, 809
BbsI GAAGAC 1 cut(s) 541
Bbv12I GWGCWC 1 cut(s) 306
BbvI GCAGC 1 cut(s) 461
BccI CCATC 6 cut(s) 200, 259, 364, 426, 524, 627
BciT130I CCWGG 1 cut(s) 520
BciVI GTATCC 1 cut(s) 393
BclI TGATCA 1 cut(s) 498
BcoDI GTCTC 1 cut(s) 188
BfuI GTATCC 1 cut(s) 393
BisI GCNGC 1 cut(s) 450
BlsI GCNGC 1 cut(s) 451
Bme1390I CCNGG 1 cut(s) 520
BmiI GGNNCC 4 cut(s) 217, 517, 616, 811
BmrFI CCNGG 1 cut(s) 520
BoxI GACNNNNGTC 1 cut(s) 172
BpiI GAAGAC 1 cut(s) 541
BplI GAGNNNNNCTC 2 cut(s) 10, 42
BsaAI YACGTR 1 cut(s) 249
BsaJI CCNNGG 1 cut(s) 311
BsaXI ACNNNNNCTCC 2 cut(s) 622, 652
Bsc4I CCNNNNNNNGG 1 cut(s) 392
Bse1I ACTGG 3 cut(s) 15, 364, 414
Bse21I CCTNAGG 1 cut(s) 510
BseBI CCWGG 1 cut(s) 520
BseDI CCNNGG 1 cut(s) 311
BseGI GGATG 2 cut(s) 166, 535
BseLI CCNNNNNNNGG 1 cut(s) 392
BseMII CTCAG 1 cut(s) 501
BseNI ACTGG 3 cut(s) 15, 364, 414
BseSI GKGCMC 1 cut(s) 518
BseXI GCAGC 1 cut(s) 461
Bsh1236I CGCG 1 cut(s) 648
BshFI GGCC 4 cut(s) 316, 413, 585, 781
BshNI GGYRCC 3 cut(s) 515, 614, 809
BsiHKAI GWGCWC 1 cut(s) 306
BslI CCNNNNNNNGG 1 cut(s) 392
BsmAI GTCTC 1 cut(s) 188
BsmBI CGTCTC 1 cut(s) 188
BsnI GGCC 4 cut(s) 316, 413, 585, 781
Bsp1286I GDGCHC 2 cut(s) 306, 518
Bsp143I GATC 2 cut(s) 430, 498
BspACI CCGC 1 cut(s) 527
BspANI GGCC 4 cut(s) 316, 413, 585, 781
BspCNI CTCAG 1 cut(s) 502
BspFNI CGCG 1 cut(s) 648
BspLI GGNNCC 4 cut(s) 217, 517, 616, 811
BspT107I GGYRCC 3 cut(s) 515, 614, 809
BsrI ACTGG 3 cut(s) 15, 364, 414
BssECI CCNNGG 1 cut(s) 311
BssMI GATC 2 cut(s) 430, 498
BssT1I CCWWGG 1 cut(s) 311
Bst2UI CCWGG 1 cut(s) 520
BstBAI YACGTR 1 cut(s) 249
BstC8I GCNNGC 1 cut(s) 40
BstDEI CTNAG 1 cut(s) 510
BstF5I GGATG 2 cut(s) 166, 535
BstFNI CGCG 1 cut(s) 648
BstKTI GATC 2 cut(s) 433, 501
BstMAI GTCTC 1 cut(s) 188
BstMBI GATC 2 cut(s) 430, 498
BstMWI GCNNNNNNNGC 1 cut(s) 432
BstNI CCWGG 1 cut(s) 520
BstNSI RCATGY 1 cut(s) 356
BstPAI GACNNNNGTC 1 cut(s) 172
BstSCI CCNGG 1 cut(s) 518
BstSLI GKGCMC 1 cut(s) 518
BstUI CGCG 1 cut(s) 648
BstV1I GCAGC 1 cut(s) 461
BstV2I GAAGAC 1 cut(s) 541
BstXI CCANNNNNNTGG 1 cut(s) 73
Bsu36I CCTNAGG 1 cut(s) 510
BsuI GTATCC 1 cut(s) 393
BsuRI GGCC 4 cut(s) 316, 413, 585, 781
BtsCI GGATG 2 cut(s) 166, 535
BtsIMutI CAGTG 1 cut(s) 693
Cac8I GCNNGC 1 cut(s) 40
CsiI ACCWGGT 1 cut(s) 518
Csp6I GTAC 3 cut(s) 407, 615, 810
CspCI CAANNNNNGTGG 2 cut(s) 82, 117
CviAII CATG 4 cut(s) 83, 353, 627, 743
CviQI GTAC 3 cut(s) 407, 615, 810
DdeI CTNAG 1 cut(s) 510
DpnI GATC 2 cut(s) 432, 500
DpnII GATC 2 cut(s) 430, 498
DraI TTTAAA 1 cut(s) 550
DrdI GACNNNNNNGTC 1 cut(s) 752
DseDI GACNNNNNNGTC 1 cut(s) 752
EaeI YGGCCR 1 cut(s) 411
Eco130I CCWWGG 1 cut(s) 311
Eco147I AGGCCT 2 cut(s) 585, 781
Eco32I GATATC 1 cut(s) 228
Eco81I CCTNAGG 1 cut(s) 510
EcoRI GAATTC 1 cut(s) 77
EcoRII CCWGG 1 cut(s) 518
EcoRV GATATC 1 cut(s) 228
EcoT14I CCWWGG 1 cut(s) 311
ErhI CCWWGG 1 cut(s) 311
Esp3I CGTCTC 1 cut(s) 188
FaeI CATG 4 cut(s) 86, 356, 630, 746
FalI AAGNNNNNCTT 2 cut(s) 626, 658
FatI CATG 4 cut(s) 82, 352, 626, 742
FauNDI CATATG 1 cut(s) 377
FbaI TGATCA 1 cut(s) 498
Fnu4HI GCNGC 1 cut(s) 450
FokI GGATG 2 cut(s) 173, 542
Fsp4HI GCNGC 1 cut(s) 450
GluI GCNGC 1 cut(s) 450
HaeIII GGCC 4 cut(s) 316, 413, 585, 781
Hin1II CATG 4 cut(s) 86, 356, 630, 746
HinfI GANTC 4 cut(s) 178, 458, 770, 797
Hpy188I TCNGA 2 cut(s) 220, 465
Hpy188III TCNNGA 3 cut(s) 185, 478, 509
HpyAV CCTTC 3 cut(s) 128, 151, 628
HpyCH4IV ACGT 1 cut(s) 248
HpyCH4V TGCA 2 cut(s) 125, 788
HpyF10VI GCNNNNNNNGC 1 cut(s) 432
HpyF3I CTNAG 1 cut(s) 510
HpySE526I ACGT 1 cut(s) 248
Hsp92II CATG 4 cut(s) 86, 356, 630, 746
KpnI GGTACC 2 cut(s) 618, 813
Ksp22I TGATCA 1 cut(s) 498
Kzo9I GATC 2 cut(s) 430, 498
LmnI GCTCC 2 cut(s) 309, 440
LpnPI CCDG 8 cut(s) 345, 395, 505, 522, 532, 554, 567, 780
Lsp1109I GCAGC 1 cut(s) 461
MabI ACCWGGT 1 cut(s) 518
MaeII ACGT 1 cut(s) 248
MaeIII GTNAC 5 cut(s) 244, 256, 268, 355, 738
MalI GATC 2 cut(s) 432, 500
MboI GATC 2 cut(s) 430, 498
MboII GAAGA 4 cut(s) 16, 215, 413, 546
MhlI GDGCHC 2 cut(s) 306, 518
MlsI TGGCCA 1 cut(s) 413
MluCI AATT 7 cut(s) 71, 77, 96, 106, 147, 240, 717
MluI ACGCGT 1 cut(s) 646
MluNI TGGCCA 1 cut(s) 413
MlyI GAGTC 2 cut(s) 187, 764
MmeI TCCRAC 2 cut(s) 467, 781
MnlI CCTC 8 cut(s) 318, 463, 505, 596, 624, 771, 773, 792
Mox20I TGGCCA 1 cut(s) 413
MscI TGGCCA 1 cut(s) 413
MseI TTAA 3 cut(s) 549, 665, 732
MslI CAYNNNNRTG 1 cut(s) 734
Msp20I TGGCCA 1 cut(s) 413
MspA1I CMGCKG 2 cut(s) 527, 710
MspR9I CCNGG 1 cut(s) 520
MvaI CCWGG 1 cut(s) 520
MvnI CGCG 1 cut(s) 648
MwoI GCNNNNNNNGC 1 cut(s) 432
NdeI CATATG 1 cut(s) 377
NdeII GATC 2 cut(s) 430, 498
NlaIII CATG 4 cut(s) 86, 356, 630, 746
NlaIV GGNNCC 4 cut(s) 217, 517, 616, 811
NspI RCATGY 1 cut(s) 356
PceI AGGCCT 2 cut(s) 585, 781
PciI ACATGT 1 cut(s) 352
PfeI GAWTC 2 cut(s) 458, 797
PkrI GCNGC 1 cut(s) 451
PleI GAGTC 2 cut(s) 186, 764
PpsI GAGTC 2 cut(s) 186, 764
Ppu21I YACGTR 1 cut(s) 249
PscI ACATGT 1 cut(s) 352
PshAI GACNNNNGTC 1 cut(s) 172
Psp6I CCWGG 1 cut(s) 518
PspGI CCWGG 1 cut(s) 518
PspN4I GGNNCC 4 cut(s) 217, 517, 616, 811
PvuII CAGCTG 1 cut(s) 710
RsaI GTAC 3 cut(s) 408, 616, 811
RsaNI GTAC 3 cut(s) 407, 615, 810
RseI CAYNNNNRTG 1 cut(s) 734
SaqAI TTAA 3 cut(s) 549, 665, 732
SatI GCNGC 1 cut(s) 450
Sau3AI GATC 2 cut(s) 430, 498
SchI GAGTC 2 cut(s) 187, 764
ScrFI CCNGG 1 cut(s) 520
SduI GDGCHC 2 cut(s) 306, 518
SetI ASST 9 cut(s) 28, 251, 313, 524, 616, 644, 664, 712, 765
SexAI ACCWGGT 1 cut(s) 518
SmiMI CAYNNNNRTG 1 cut(s) 734
Sse9I AATT 7 cut(s) 71, 77, 96, 106, 147, 240, 717
SseBI AGGCCT 2 cut(s) 585, 781
SsiI CCGC 1 cut(s) 527
SspI AATATT 1 cut(s) 53
StuI AGGCCT 2 cut(s) 585, 781
StyD4I CCNGG 1 cut(s) 518
StyI CCWWGG 1 cut(s) 311
TaiI ACGT 1 cut(s) 251
TaqI TCGA 5 cut(s) 143, 176, 186, 622, 652
TasI AATT 7 cut(s) 71, 77, 96, 106, 147, 240, 717
TatI WGTACW 1 cut(s) 406
TfiI GAWTC 2 cut(s) 458, 797
Tru1I TTAA 3 cut(s) 549, 665, 732
Tru9I TTAA 3 cut(s) 549, 665, 732
TscAI CASTG 1 cut(s) 700
TseI GCWGC 1 cut(s) 449
TspDTI ATGAA 4 cut(s) 17, 216, 554, 738
TspRI CASTG 1 cut(s) 700
XapI RAATTY 3 cut(s) 77, 96, 147
XceI RCATGY 1 cut(s) 356
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.