Rh5CG384500

Proteasome-associated protein ECM29 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0006358
Physical Location & Seq
Forward (+)
50600585 .. 50627477
26893 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG384500.1

Sequence Viewer

Length: 5079 bp
ATGCTTCTGTTAGGGGTTTCCAAGCTTCCTCAACAGCACCAAGAAATTATACTCAGACTTGTTGTAAAGGTCATTGGTGAATGTCACACAAGCGGAATAGATGGAGAAGTTGCTGCAAAGTATGGACTGATAAACGATTCTCAAGACAGAAACGTTTTTATCGAATTTTGCCTTCATACAATCTTATATCAGCCGTCATCTCAAAGAGAATGCCCGCCAGGACTTTCAATTGCTCAAGCCAACCGCGTAACAGCTAGACAATCATTGAACAGTGATATGCTTCTAACAAGAAAGTTAGGGATCTTGAATGTTGTTGAGGCCATGGTGCTGGCCCCTGAGCTCGTTTATCCTTTGTACCTGACTGCCTCCATAGATTGTCAAGAGCTTGTCGTTAAGAGAGGAGAGGAGCTTGTAAAGAAGAAGGCTGCTGGAGCTAATTTAGATGATTCAGTCCTCATAAACAGACTTTTTTTGTTATTTAATGGAACTGCTACATCTCAAAATGTTGGTCCTGAATCTAGAGTCACTCCAGCAAGTCCTGCTTTGAAAGGAAAAATGATGTCTATTTTCTGCCGGTCTATTACAGCCGCTAACAGTTTCCCTGCAACCTTGCAGTGCATTTTTGGTTGCATATATGGAAGTGATACCACATCAAGGTTGAAGCAGTTGGGAATGGAATTCACTGTCTGGGTATTTAAACATTCCACAATCGATCAACTTAAACTTATGGGCCCTGTCATTCTGAGTGGAATACTGAAGTCACTTGACACTGCTTCAAGTTCAGAATCAGATGCTACTCATAGGGACTCCAGAACTTTCGCTTATCAAGCTATTGGATTGCTTGCACAGCGGATGCCTCAGCTTTTCAGAGATACGACTGACATGGCTGTGCGTCTTTTTGATGCATTGAAGGTAGAGACCCAATATTTTCGCCTCAGTATTCAAGAAGCAACAAATTCTCTTGCCACTGCGTATAAGGGAGCCCCCTCAACAGTACTAAAGGATCTGGAGACTCTTTTGCTCAAGTATACTCAAGAGGAACAAAGTGAAGTAAGATTCTGCGCTATAAGATGGGCGACTTCTTTATTTGACTTACAACATTGTCCAAGCCGGTATATCTGTATGCTTGGGGCTGCTGATATTAAATTGGATATAAGGGAGATTGCATTTGAAGGCCTTTTTCCTATGAAAGATGATGGGTCAAGTATGAGTAAGATACAAGAGCTACATTACCCCAAACTTGGAGACATGTTAGATTATATTCTTTCACAGCAGCCAAACTTGTCAGAACCAGCTGAGATGCGGGAGCAGAAGCTTCAGTTTCCCTCAAAAACGTATCTAGTTATTATTGAATTTTTGTTGAAGTGCTTTGAGTCAGAATTGGAGCATAACAATTCAATTAAAGGATCAACTCAGTTTCACTCATCTGTAGAAGCAATGTGCTTACTTCTGGAACATGCTATGGCATATGAAGGGTCTGTTGAGTTGCATGCCAAGGCTTCCAATGCATTGATTGCAATTGGATCTCATATTCCAGAGCTTGTAGCTTCACGTTATGCAAAAAAAGTTCAATGGCTAAAACAATTATTGAGTCATATTGACTTAGATACCCGTGAAGCTGCAGCACGTTTACTTGGTATTGCTTCCTCCGTTCTTCCTCCAGCTGCTTCATGTGATCTTATTTCTGAAATAATTGCCTCAGTAAGGGGAATACATAAGTTAAGGTTTGAGGTTCAACACGGAGCATTATGTGCATTAGGTTATGTAACTGCAAATTGTATCTCTAGAAAACCAGCTATCCCAGAGGCATTATTTCAAACTACCCTAAAGTTACTTGTCGATGTTGTTAATTCTGAGACTGCGACACTAGCATCAGTAGCGGTCCAAGCGTTAGGTCATATTGGACTGATCATTGCATTGCCTTCACTTATTATTGAGTCTTGTTCAGTTGATATTCTGGTGCTTTTACAAGAAAGATTGAGAAAGCTACTTAAGGGTGATGATACCAAAGCAATTCAGAAAATTATTATATCCATTGGCCACATCTGTGTCAAGGAAACATCATCCGCGTGTCTTAATATTGCTCTGGAGTTAATATTCAGTCTTTCCCGATCTAAGGTTGAGGATATCCTCTTTGCAGCTGGCGAGGCACTGTCGTTTTTGTGGGGTGGTGTTCCGGTGACTGCTGATTTGATTCTCAGAACTAATTATTCACTCTCCATGGCTTCTAAGTTTCTCATGGGAGATGCGAGTTTATCTCTCTCAAAACATAGCCCCATGGAAATGAATGAAGCTAATAAAGATCGTGATGACATGGTTCGAGAAGCAATTACTAAAAAGCTTTTTGACGATCTTCTATACAGTACAAGAAAAGAAGATCGCTGTGCTGGAACTGTATGGCTATTATCAATTACCATGTATTGTGGCCATCAACCAGCTATTCAGAAAATGCTGCCAGAAATTCAGGAGGCTTTTTCACACCTTCTTGGTGAACAGAATGAACTCACGCAGGAGCTGGCCTCACAAGGGATGAGCGTTGTGTATGAAATTGGTGATGCATCAATGAAAGGAAACTTGGTAAATGCACTTGTAAACACTCTGACAGGTTCCGGGAAGAAAAAAAGAGCTATAAAGCTTGCTGAAGACTCTGAAGTTTTTCAAGAGGGAGTTATTGGTGAAGGTCTTAGTGGAGGCAAACTCAGTACATACAAGGAGCTGTGCAATGTAGCGAATGAGATGGGACAACCAGATCTGATTTATAAGTTTATGGATCTGGCTAATTATCAAACTTCTCTGAATTCAAAGAGGGGTGCTGCCTTTGGTTTTTCAAAGATAGCAAAGCAAGCAGGAGATGCTCTGAAGCCACACCTGCGGTCCTTAATTCCAAGGCTTGTTCGTTATCAGTATGATCCTGACAAAAATGTGCAGGATGCTATGTCACACATATGGAAGTCACTGGTGGAAGATTCAAAGAAAACCATTGATGAACACTTGGACCTCATTATTGATGACTTGTTAATACAATGTGGATCTAGGCTTTGGCGCACACGAGAGGCATCCTGTCTTGCCCTTGCAGATATCATCCAGGGCCGGAAGTTTGATCAGGTTGGGAAGCATTTAAGGAAGTTATGGTCAGCAGCATTCCGTGCCATGGATGATATTAAAGAGACTGTTCGAAATTCTGGCGACAAGTTATGCCGTGTTTTAACTTCATTGACGGTGAGGCTTTCTGATGTCACCCTAACTGATGTATCAGATGCAAGCCAAACAATGGATCTTGTTCTGCCTCTTTTGCTTACAGAAGGCATACTAAGTAAAGTTGATAGTATTCGAAAGGCATCTATAGAGGTTGTTATGAAGCTTGCAAAGGGGGCTGGCATTGCAATTCGTCCACATTTATCTGATCTAGTTTGTTGCATGCTGGAAAGTTTATCGAGCCTTGAGGACCAAGGGCTTAATTACGTGGAGTTGCATGCAGCAAATGCTGGGATACAGACAGAGAAGCTCGAAAGTTTGAGAATTTCGATTGCAAAAGGCTCTCCCATGTGGGAAACTCTTGATCTCTGCATAAAAGTTGTGGATGCAGGATCATTAGATCAATTGGTTCCTCGTCTTGGTCAATTGGTTCGATCTGGGGTTGGTCTCAATACAAGGGTTGGTGTTGCCAGCTTTATTACCTTACTAGTTCAAGAAGTTGGTGTTGAAATCAAACCATATACGAGCAAGCTACTGAGGCTGTTGTTTCCAGTTGTGAAGGACGAAAAAAGTGCTGCATCAAAACGAGCCTTTGCTGATGCATGTGCAGTACTTTTAAAACATACAGTAGCCTCTCAGGCCGAAAAGTTGATTGATGACACTGCAGCTTTGCATATTGGTGACCGAAATGCTCAAGTGGCGTGTGCGGTTTTATTGAAAAGCTATTCATCCAAGGCCTCAGACATTTTGGATGGATATCTTGCAGCTATACTTCCAGTAATTTTTATCTCAAGATTTGACGATGACAAGTATGTTTCTGGCCTGTTTCAAGAGTTGTGGGAAGAGCATACAAGTAGTGAACGTGTAGCCCTCCAGTTATACTTGGCAGAAATTGTTTCTCTTATTTGTGAGAGCATTGCAACATCTTCTTGGGCAAGTAAAAAGAAGTCAGCCCAGGCCATTTCCAAACTCAGTGAAGTTTTGGGTGAATCTCTGGCTTCTTACTATAATGTCTTGCTCAAATCTCTTATGAAAGAGATTCCTGGTCGGTTATGGGAGGGAAAGGAAGCTCTATTGTATTCAATTGCTGCACTTTCTGTATCTTGTCATAAAGCAATTTCAACTGATGATCCTCATACTCTGAATGAAGTTTTGAGGGTATTATCTTCAGCATGCATGAAAAAGGCAAAGAAATATCGTGAATCAGCTCTATCCTGTCTTGAACAGGTTGTAAAAGCCTTTGGTAATCAAGAGTTCTTTAATGAGGCATTTCCATTGTTATACGATATGTGTAATGCTTCCACTCTCGGTGTTTCTGGGAAAGCAACTTTGGCTGGCAATGGTGCTAAAGCAGAAGAGGATCAAATTGAGCAGGTTCCTGTTTCACATGAGAAAATCTTGGACTGCATGACCGCTTGCATTCATGTGGCTAATATAAAAGATATTCTTGAAAAACAGAAGAACTTGATGCATGTGTTGACTACTGCTCTGTCACCTGGATTTCCATGGACAGTCAAAATATCTGCCCTTTCATTGATAAAGGAACTTGTTTCAAGTGTCCAGAAGGTTCTGGGTGACTCCAAAGAAACTTATGCTCATGCCAACATAATTTTGTTAGTTCAGGAGTTGTTTCACTCAGTGGCACCTCAAGTTGTCGAATGCATAAGCACAATTAAAGTTGGGCAGGTTCATGTAACTGCTTCAGAGTGCCTTCTAGTGATCATCACGCTTTATGGAGACCTTCGGTCAATTGACTCGACTAATGTACAATTTGAGGGTACGCTTCTGCATCTGTACGAAGTGGAGAAAAATGGCGAAGCAAAGTCCTTGTTGAAAAAATGTATGGATACCCTTGAAAACTTAAAACTAGAATGCCCGAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ecm29

Protein Analysis

1692

Amino Acids

186.09

Weight (kDa)

6.18

Isoelectric Point (pI)

39.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ECM29_N PF13001 2 - 377 5.4e-93 Proteasome component ECM29, N-terminal
ARM_ECM29 PF23702 502 - 626 2.7e-12 ECM29, ARM-like repeats
HEAT_GCN1 PF23271 943 - 1067 9.2e-07 Stalled ribosome sensor GCN1-like, HEAT repeats
HEAT_ECM29 PF24492 1129 - 1288 3.4e-47 Proteasome adapter and scaffold protein ECM29, HEAT-repeat domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 2760
AarI CACCTGC 1 cut(s) 2877
Acc36I ACCTGC 3 cut(s) 2877, 4558, 4870
AccB1I GGYRCC 1 cut(s) 4837
AccB7I CCANNNNNTGG 1 cut(s) 3271
AccI GTMKAC 1 cut(s) 1028
AccII CGCG 2 cut(s) 246, 2069
AclI AACGTT 1 cut(s) 153
AcoI YGGCCR 2 cut(s) 2038, 2425
AcsI RAATTY 8 cut(s) 164, 677, 955, 1352, 2460, 2797, 3178, 3519
AcuI CTGAAG 7 cut(s) 776, 1301, 2661, 2670, 2879, 4347, 4881
AdeI CACNNNGTG 1 cut(s) 4834
AfaI GTAC 8 cut(s) 356, 996, 2365, 2704, 3807, 4962, 4975, 4991
AfiI CCNNNNNNNGG 8 cut(s) 654, 1241, 1704, 2116, 2526, 3151, 3271, 3614
AflII CTTAAG 1 cut(s) 1991
AflIII ACRYGT 2 cut(s) 1248, 4057
AhdI GACNNNNNGTC 1 cut(s) 4939
AhlI ACTAGT 1 cut(s) 3682
AjnI CCWGG 5 cut(s) 217, 3084, 4149, 4237, 4690
AjuI GAANNNNNNNTTGG 4 cut(s) 2558, 2590, 4508, 4540
AleI CACNNNNGTG 1 cut(s) 2046
Alw21I GWGCWC 1 cut(s) 342
Alw26I GTCTC 7 cut(s) 911, 1004, 1239, 1850, 3161, 3647, 4926
AlwNI CAGNNNCTG 1 cut(s) 2515
Ama87I CYCGRG 1 cut(s) 5071
ApaI GGGCCC 1 cut(s) 734
ApoI RAATTY 8 cut(s) 164, 677, 955, 1352, 2460, 2797, 3178, 3519
ArsI GACNNNNNNTTYG 4 cut(s) 493, 525, 2173, 2205
Asp700I GAANNNNTTC 1 cut(s) 2655
AspLEI GCGC 2 cut(s) 1064, 3045
AspS9I GGNCC 9 cut(s) 331, 509, 730, 731, 1882, 2874, 2995, 3088, 3445
AsuC2I CCSGG 1 cut(s) 2611
AsuII TTCGAA 2 cut(s) 3175, 3331
AvaI CYCGRG 1 cut(s) 5071
AvaII GGWCC 5 cut(s) 509, 1882, 2874, 2995, 3445
BaeGI GKGCMC 1 cut(s) 734
BaeI ACNNNNGTAYC 2 cut(s) 3234, 3267
BalI TGGCCA 2 cut(s) 2040, 2427
BanI GGYRCC 1 cut(s) 4837
BanII GRGCYC 3 cut(s) 342, 734, 985
BauI CACGAG 1 cut(s) 3048
BbsI GAAGAC 1 cut(s) 2649
Bbv12I GWGCWC 1 cut(s) 342
BbvCI CCTCAGC 1 cut(s) 858
BccI CCATC 6 cut(s) 95, 1065, 1190, 2436, 2731, 3941
BceAI ACGGC 2 cut(s) 178, 3183
BcgI CGANNNNNNTGC 2 cut(s) 3749, 3783
BciT130I CCWGG 5 cut(s) 219, 3086, 4151, 4239, 4692
BciVI GTATCC 2 cut(s) 3483, 5035
BclI TGATCA 3 cut(s) 1908, 3100, 4914
BcnI CCSGG 1 cut(s) 2611
BcoDI GTCTC 7 cut(s) 911, 1004, 1239, 1850, 3161, 3647, 4926
BcuI ACTAGT 1 cut(s) 3682
BfmI CTRYAG 4 cut(s) 1428, 1620, 3342, 3858
BfrI CTTAAG 1 cut(s) 1991
BfuAI ACCTGC 3 cut(s) 2877, 4558, 4870
BfuI GTATCC 2 cut(s) 3483, 5035
BglI GCCNNNNNGGC 1 cut(s) 3833
BglII AGATCT 1 cut(s) 2749
BmcAI AGTACT 2 cut(s) 996, 3807
Bme1390I CCNGG 6 cut(s) 219, 2611, 3086, 4151, 4239, 4692
Bme18I GGWCC 5 cut(s) 509, 1882, 2874, 2995, 3445
BmeRI GACNNNNNGTC 1 cut(s) 4939
BmeT110I CYCGRG 1 cut(s) 5071
BmgT120I GGNCC 9 cut(s) 331, 509, 730, 731, 1882, 2874, 2995, 3088, 3445
BmiI GGNNCC 7 cut(s) 333, 732, 982, 2608, 3606, 4572, 4839
BmrFI CCNGG 6 cut(s) 219, 2611, 3086, 4151, 4239, 4692
BpiI GAAGAC 1 cut(s) 2649
BplI GAGNNNNNCTC 6 cut(s) 2242, 2274, 2504, 2536, 2682, 2714
BpmI CTGGAG 7 cut(s) 450, 513, 793, 1028, 1644, 2108, 4052
Bpu10I CCTNAGC 2 cut(s) 336, 858
Bpu14I TTCGAA 2 cut(s) 3175, 3331
BpuEI CTTGAG 8 cut(s) 126, 219, 1007, 1017, 3461, 3873, 3970, 4827
BpuMI CCSGG 1 cut(s) 2611
Bsa29I ATCGAT 1 cut(s) 711
BsaAI YACGTR 1 cut(s) 3463
BsaBI GATNNNNATC 1 cut(s) 3951
BsaI GGTCTC 3 cut(s) 911, 3647, 4926
BsaWI WCCGGW 1 cut(s) 2176
Bsc4I CCNNNNNNNGG 8 cut(s) 654, 1241, 1704, 2116, 2526, 3151, 3271, 3614
Bse118I RCCGGY 2 cut(s) 573, 1110
Bse1I ACTGG 4 cut(s) 2961, 3746, 3971, 4069
Bse3DI GCAATG 7 cut(s) 1443, 1911, 1916, 2728, 3378, 4110, 4540
Bse8I GATNNNNATC 1 cut(s) 3951
BseBI CCWGG 5 cut(s) 219, 3086, 4151, 4239, 4692
BseCI ATCGAT 1 cut(s) 711
BseJI GATNNNNATC 1 cut(s) 3951
BseLI CCNNNNNNNGG 8 cut(s) 654, 1241, 1704, 2116, 2526, 3151, 3271, 3614
BseMI GCAATG 7 cut(s) 1443, 1911, 1916, 2728, 3378, 4110, 4540
BseNI ACTGG 4 cut(s) 2961, 3746, 3971, 4069
BseRI GAGGAG 2 cut(s) 414, 419
BseSI GKGCMC 1 cut(s) 734
BseYI CCCAGC 1 cut(s) 3485
BsgI GTGCAG 3 cut(s) 2945, 3822, 4269
Bsh1236I CGCG 2 cut(s) 246, 2069
BshNI GGYRCC 1 cut(s) 4837
BshVI ATCGAT 1 cut(s) 711
BsiHKAI GWGCWC 1 cut(s) 342
BsiHKCI CYCGRG 1 cut(s) 5071
BsiSI CCGG 5 cut(s) 574, 1111, 2177, 2610, 3091
BslFI GGGAC 2 cut(s) 818, 2754
BslI CCNNNNNNNGG 8 cut(s) 654, 1241, 1704, 2116, 2526, 3151, 3271, 3614
BsmAI GTCTC 7 cut(s) 911, 1004, 1239, 1850, 3161, 3647, 4926
BsmFI GGGAC 2 cut(s) 818, 2754
BsmI GAATGC 5 cut(s) 215, 3140, 4614, 4859, 5072
Bso31I GGTCTC 3 cut(s) 911, 3647, 4926
BsoBI CYCGRG 1 cut(s) 5071
Bsp119I TTCGAA 2 cut(s) 3175, 3331
Bsp120I GGGCCC 1 cut(s) 730
Bsp1286I GDGCHC 3 cut(s) 342, 734, 985
Bsp1407I TGTACA 1 cut(s) 4960
Bsp19I CCATGG 5 cut(s) 321, 2220, 2277, 3150, 4700
BspDI ATCGAT 1 cut(s) 711
BspFNI CGCG 2 cut(s) 246, 2069
BspLI GGNNCC 7 cut(s) 333, 732, 982, 2608, 3606, 4572, 4839
BspMAI CTGCAG 2 cut(s) 1624, 3862
BspMI ACCTGC 3 cut(s) 2877, 4558, 4870
BspQI GCTCTTC 1 cut(s) 4032
BspT104I TTCGAA 2 cut(s) 3175, 3331
BspT107I GGYRCC 1 cut(s) 4837
BspTI CTTAAG 1 cut(s) 1991
BspTNI GGTCTC 3 cut(s) 911, 3647, 4926
BsrDI GCAATG 7 cut(s) 1443, 1911, 1916, 2728, 3378, 4110, 4540
BsrFI RCCGGY 2 cut(s) 573, 1110
BsrGI TGTACA 1 cut(s) 4960
BsrI ACTGG 4 cut(s) 2961, 3746, 3971, 4069
BssAI RCCGGY 2 cut(s) 573, 1110
BssNAI GTATAC 1 cut(s) 1029
BssSI CACGAG 1 cut(s) 3048
BssT1I CCWWGG 9 cut(s) 321, 1494, 2220, 2277, 2885, 3150, 3448, 3927, 4700
Bst1107I GTATAC 1 cut(s) 1029
Bst2BI CACGAG 1 cut(s) 3048
Bst2UI CCWGG 5 cut(s) 219, 3086, 4151, 4239, 4692
Bst6I CTCTTC 2 cut(s) 4032, 4545
BstAFI CTTAAG 1 cut(s) 1991
BstAPI GCANNNNNTGC 6 cut(s) 539, 1514, 1751, 2852, 3146, 3482
BstAUI TGTACA 1 cut(s) 4960
BstBAI YACGTR 1 cut(s) 3463
BstBI TTCGAA 2 cut(s) 3175, 3331
BstDSI CCRYGG 5 cut(s) 321, 2220, 2277, 3150, 4700
BstEII GGTNACC 1 cut(s) 3875
BstENI CCTNNNNNAGG 1 cut(s) 1702
BstFNI CGCG 2 cut(s) 246, 2069
BstHHI GCGC 2 cut(s) 1064, 3045
BstMAI GTCTC 7 cut(s) 911, 1004, 1239, 1850, 3161, 3647, 4926
BstNI CCWGG 5 cut(s) 219, 3086, 4151, 4239, 4692
BstNSI RCATGY 8 cut(s) 1252, 1460, 1493, 3421, 3476, 3801, 4371, 4670
BstPI GGTNACC 1 cut(s) 3875
BstSCI CCNGG 6 cut(s) 217, 2609, 3084, 4149, 4237, 4690
BstSFI CTRYAG 4 cut(s) 1428, 1620, 3342, 3858
BstSLI GKGCMC 1 cut(s) 734
BstUI CGCG 2 cut(s) 246, 2069
BstV2I GAAGAC 1 cut(s) 2649
BstX2I RGATCY 7 cut(s) 300, 1003, 1523, 2749, 2770, 3029, 3274
BstXI CCANNNNNNTGG 1 cut(s) 328
BstYI RGATCY 7 cut(s) 300, 1003, 1523, 2749, 2770, 3029, 3274
BstZ17I GTATAC 1 cut(s) 1029
Bsu15I ATCGAT 1 cut(s) 711
BsuI GTATCC 2 cut(s) 3483, 5035
BsuTUI ATCGAT 1 cut(s) 711
BtgI CCRYGG 5 cut(s) 321, 2220, 2277, 3150, 4700
BtsI GCAGTG 4 cut(s) 620, 768, 966, 3855
BveI ACCTGC 3 cut(s) 2877, 4558, 4870
CaiI CAGNNNCTG 1 cut(s) 2515
CfoI GCGC 2 cut(s) 1064, 3045
Cfr10I RCCGGY 2 cut(s) 573, 1110
Cfr13I GGNCC 9 cut(s) 331, 509, 730, 731, 1882, 2874, 2995, 3088, 3445
ClaI ATCGAT 1 cut(s) 711
CseI GACGC 1 cut(s) 881
Csp6I GTAC 8 cut(s) 355, 995, 2364, 2703, 3806, 4961, 4974, 4990
CspCI CAANNNNNGTGG 2 cut(s) 4013, 4048
CviQI GTAC 8 cut(s) 355, 995, 2364, 2703, 3806, 4961, 4974, 4990
DraI TTTAAA 2 cut(s) 697, 3813
DraIII CACNNNGTG 1 cut(s) 4834
DriI GACNNNNNGTC 1 cut(s) 4939
EaeI YGGCCR 2 cut(s) 2038, 2425
Eam1104I CTCTTC 2 cut(s) 4032, 4545
Eam1105I GACNNNNNGTC 1 cut(s) 4939
EarI CTCTTC 2 cut(s) 4032, 4545
Ecl136II GAGCTC 1 cut(s) 340
Eco130I CCWWGG 9 cut(s) 321, 1494, 2220, 2277, 2885, 3150, 3448, 3927, 4700
Eco147I AGGCCT 2 cut(s) 1176, 3932
Eco24I GRGCYC 3 cut(s) 342, 734, 985
Eco31I GGTCTC 3 cut(s) 911, 3647, 4926
Eco32I GATATC 3 cut(s) 2128, 3079, 3953
Eco47I GGWCC 5 cut(s) 509, 1882, 2874, 2995, 3445
Eco53kI GAGCTC 1 cut(s) 340
Eco57I CTGAAG 7 cut(s) 776, 1301, 2661, 2670, 2879, 4347, 4881
Eco88I CYCGRG 1 cut(s) 5071
Eco91I GGTNACC 1 cut(s) 3875
EcoICRI GAGCTC 1 cut(s) 340
EcoNI CCTNNNNNAGG 1 cut(s) 1702
EcoO109I RGGNCCY 1 cut(s) 731
EcoO65I GGTNACC 1 cut(s) 3875
EcoRI GAATTC 2 cut(s) 677, 2797
EcoRII CCWGG 5 cut(s) 217, 3084, 4149, 4237, 4690
EcoRV GATATC 3 cut(s) 2128, 3079, 3953
EcoT14I CCWWGG 9 cut(s) 321, 1494, 2220, 2277, 2885, 3150, 3448, 3927, 4700
EcoT22I ATGCAT 7 cut(s) 907, 1510, 2560, 3799, 4373, 4668, 4859
EcoT38I GRGCYC 3 cut(s) 342, 734, 985
ErhI CCWWGG 9 cut(s) 321, 1494, 2220, 2277, 2885, 3150, 3448, 3927, 4700
FalI AAGNNNNNCTT 4 cut(s) 526, 558, 4626, 4658
FaqI GGGAC 2 cut(s) 818, 2754
FauI CCCGC 2 cut(s) 222, 1296
FauNDI CATATG 2 cut(s) 1468, 2945
FbaI TGATCA 3 cut(s) 1908, 3100, 4914
FblI GTMKAC 1 cut(s) 1028
FriOI GRGCYC 3 cut(s) 342, 734, 985
GlaI GCGC 2 cut(s) 1063, 3044
GsaI CCCAGC 1 cut(s) 3489
GsuI CTGGAG 7 cut(s) 450, 513, 793, 1028, 1644, 2108, 4052
HapII CCGG 5 cut(s) 574, 1111, 2177, 2610, 3091
HgaI GACGC 1 cut(s) 881
HhaI GCGC 2 cut(s) 1064, 3045
Hin6I GCGC 2 cut(s) 1062, 3043
HinP1I GCGC 2 cut(s) 1062, 3043
HincII GTYRAC 1 cut(s) 4674
HindII GTYRAC 1 cut(s) 4674
HindIII AAGCTT 5 cut(s) 23, 1313, 2339, 2633, 3359
HpaII CCGG 5 cut(s) 574, 1111, 2177, 2610, 3091
Hpy166II GTNNAC 7 cut(s) 1029, 1631, 2492, 2593, 3392, 4055, 4674
Hpy8I GTNNAC 7 cut(s) 1029, 1631, 2492, 2593, 3392, 4055, 4674
HpyCH4IV ACGT 6 cut(s) 153, 1334, 1552, 1627, 3462, 4057
HpySE526I ACGT 6 cut(s) 153, 1334, 1552, 1627, 3462, 4057
HspAI GCGC 2 cut(s) 1062, 3043
Ksp22I TGATCA 3 cut(s) 1908, 3100, 4914
LguI GCTCTTC 1 cut(s) 4032
LmnI GCTCC 8 cut(s) 406, 431, 980, 1306, 1384, 1742, 2512, 2713
MaeII ACGT 6 cut(s) 153, 1334, 1552, 1627, 3462, 4057
MfeI CAATTG 6 cut(s) 228, 1518, 3599, 3620, 4278, 4944
MflI RGATCY 7 cut(s) 300, 1003, 1523, 2749, 2770, 3029, 3274
MhlI GDGCHC 3 cut(s) 342, 734, 985
MlsI TGGCCA 2 cut(s) 2040, 2427
MluNI TGGCCA 2 cut(s) 2040, 2427
MlyI GAGTC 9 cut(s) 531, 800, 1006, 1382, 1600, 1946, 2639, 4766, 4943
Mox20I TGGCCA 2 cut(s) 2040, 2427
Mph1103I ATGCAT 7 cut(s) 907, 1510, 2560, 3799, 4373, 4668, 4859
MroXI GAANNNNTTC 1 cut(s) 2655
MscI TGGCCA 2 cut(s) 2040, 2427
MslI CAYNNNNRTG 7 cut(s) 887, 2046, 2068, 2282, 2944, 3873, 4619
Msp20I TGGCCA 2 cut(s) 2040, 2427
MspA1I CMGCKG 4 cut(s) 850, 1295, 1664, 2141
MspCI CTTAAG 1 cut(s) 1991
MspI CCGG 5 cut(s) 574, 1111, 2177, 2610, 3091
MspR9I CCNGG 6 cut(s) 219, 2611, 3086, 4151, 4239, 4692
MunI CAATTG 6 cut(s) 228, 1518, 3599, 3620, 4278, 4944
Mva1269I GAATGC 5 cut(s) 215, 3140, 4614, 4859, 5072
MvaI CCWGG 5 cut(s) 219, 3086, 4151, 4239, 4692
MvnI CGCG 2 cut(s) 246, 2069
NciI CCSGG 1 cut(s) 2611
NcoI CCATGG 5 cut(s) 321, 2220, 2277, 3150, 4700
NdeI CATATG 2 cut(s) 1468, 2945
NlaIV GGNNCC 7 cut(s) 333, 732, 982, 2608, 3606, 4572, 4839
NsiI ATGCAT 7 cut(s) 907, 1510, 2560, 3799, 4373, 4668, 4859
NspI RCATGY 8 cut(s) 1252, 1460, 1493, 3421, 3476, 3801, 4371, 4670
NspV TTCGAA 2 cut(s) 3175, 3331
OliI CACNNNNGTG 1 cut(s) 2046
PaeI GCATGC 4 cut(s) 1493, 3421, 3476, 4371
PaqCI CACCTGC 1 cut(s) 2877
PceI AGGCCT 2 cut(s) 1176, 3932
PciI ACATGT 1 cut(s) 1248
PciSI GCTCTTC 1 cut(s) 4032
PcsI WCGNNNNNNNCGW 1 cut(s) 159
PctI GAATGC 5 cut(s) 215, 3140, 4614, 4859, 5072
PdmI GAANNNNTTC 1 cut(s) 2655
PflMI CCANNNNNTGG 1 cut(s) 3271
PfoI TCCNGGA 1 cut(s) 2609
PleI GAGTC 9 cut(s) 530, 800, 1006, 1381, 1599, 1945, 2639, 4766, 4943
PpsI GAGTC 9 cut(s) 530, 800, 1006, 1381, 1599, 1945, 2639, 4766, 4943
Ppu21I YACGTR 1 cut(s) 3463
PscI ACATGT 1 cut(s) 1248
PsiI TTATAA 1 cut(s) 2760
Psp124BI GAGCTC 1 cut(s) 342
Psp1406I AACGTT 1 cut(s) 153
Psp6I CCWGG 5 cut(s) 217, 3084, 4149, 4237, 4690
PspEI GGTNACC 1 cut(s) 3875
PspFI CCCAGC 1 cut(s) 3485
PspGI CCWGG 5 cut(s) 217, 3084, 4149, 4237, 4690
PspN4I GGNNCC 7 cut(s) 333, 732, 982, 2608, 3606, 4572, 4839
PspOMI GGGCCC 1 cut(s) 730
PspPI GGNCC 9 cut(s) 331, 509, 730, 731, 1882, 2874, 2995, 3088, 3445
PstI CTGCAG 2 cut(s) 1624, 3862
PstNI CAGNNNCTG 1 cut(s) 2515
PsuI RGATCY 7 cut(s) 300, 1003, 1523, 2749, 2770, 3029, 3274
PvuII CAGCTG 3 cut(s) 1295, 1664, 2141
RsaI GTAC 8 cut(s) 356, 996, 2365, 2704, 3807, 4962, 4975, 4991
RsaNI GTAC 8 cut(s) 355, 995, 2364, 2703, 3806, 4961, 4974, 4990
RseI CAYNNNNRTG 7 cut(s) 887, 2046, 2068, 2282, 2944, 3873, 4619
SacI GAGCTC 1 cut(s) 342
SapI GCTCTTC 1 cut(s) 4032
Sau96I GGNCC 9 cut(s) 331, 509, 730, 731, 1882, 2874, 2995, 3088, 3445
ScaI AGTACT 2 cut(s) 996, 3807
SchI GAGTC 9 cut(s) 531, 800, 1006, 1382, 1600, 1946, 2639, 4766, 4943
ScrFI CCNGG 6 cut(s) 219, 2611, 3086, 4151, 4239, 4692
SduI GDGCHC 3 cut(s) 342, 734, 985
SfcI CTRYAG 4 cut(s) 1428, 1620, 3342, 3858
SfuI TTCGAA 2 cut(s) 3175, 3331
SinI GGWCC 5 cut(s) 509, 1882, 2874, 2995, 3445
SmiMI CAYNNNNRTG 7 cut(s) 887, 2046, 2068, 2282, 2944, 3873, 4619
SmlI CTYRAG 9 cut(s) 141, 234, 1022, 1032, 1991, 3440, 3888, 3985, 4842
SmoI CTYRAG 9 cut(s) 141, 234, 1022, 1032, 1991, 3440, 3888, 3985, 4842
SpeI ACTAGT 1 cut(s) 3682
SphI GCATGC 4 cut(s) 1493, 3421, 3476, 4371
SseBI AGGCCT 2 cut(s) 1176, 3932
SspI AATATT 3 cut(s) 926, 2080, 2097
SstI GAGCTC 1 cut(s) 342
StuI AGGCCT 2 cut(s) 1176, 3932
StyD4I CCNGG 6 cut(s) 217, 2609, 3084, 4149, 4237, 4690
StyI CCWWGG 9 cut(s) 321, 1494, 2220, 2277, 2885, 3150, 3448, 3927, 4700
TaiI ACGT 6 cut(s) 156, 1337, 1555, 1630, 3465, 4060
TaqII GACCGA 2 cut(s) 3894, 4929
TatI WGTACW 5 cut(s) 994, 2363, 2702, 3805, 4960
TauI GCSGC 1 cut(s) 590
TspGWI ACGGA 3 cut(s) 1639, 1755, 3134
Van91I CCANNNNNTGG 1 cut(s) 3271
Vha464I CTTAAG 1 cut(s) 1991
VpaK11BI GGWCC 5 cut(s) 509, 1882, 2874, 2995, 3445
XagI CCTNNNNNAGG 1 cut(s) 1702
XapI RAATTY 8 cut(s) 164, 677, 955, 1352, 2460, 2797, 3178, 3519
XbaI TCTAGA 2 cut(s) 518, 1784
XceI RCATGY 8 cut(s) 1252, 1460, 1493, 3421, 3476, 3801, 4371, 4670
XmiI GTMKAC 1 cut(s) 1028
XmnI GAANNNNTTC 1 cut(s) 2655
ZrmI AGTACT 2 cut(s) 996, 3807
Zsp2I ATGCAT 7 cut(s) 907, 1510, 2560, 3799, 4373, 4668, 4859
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.