Proteasome-associated protein ECM29 homolog
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G26780 AT2G26780 |
| fragaria_vesca | FvH4_3g28920 FvH4_3g28920 FvH4_3g28920 FvH4_3g28920 |
| malus_domestica | MD03G1157000.v1.1 MD12G1083300.v1.1 |
| prunus_persica | Prupe.4G270300_v2.0.a1 Prupe.4G270300_v2.0.a1 Prupe.4G270300_v2.0.a1 Prupe.4G270300_v2.0.a1 |
| pyrus_communis | pycom5153684g00070 |
| rosa_chinensis | RchiOBHm_Chr5g0051871 RchiOBHm_Chr5g0051931 |
| rosa_laevigata | RLG00000034862 |
| rosa_multiflora | Rmu_sc0003764.1_g000019 Rmu_sc0010452.1_g000006 |
| rosa_roxburghii | Rroxscaffold_1G00027420 |
| rosa_rugosa | Rorug05G0276500 |
| rosa_samantha | Rh5AG348300 Rh5BG358900 Rh5BG359500 Rh5CG384500 Rh5DG374400 |
| rosa_wichuraiana | Rw0G005060 Rw5G032870 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 3129 |
| AatII | GACGTC | 1 cut(s) | 2499 |
| AbsI | CCTCGAGG | 1 cut(s) | 1021 |
| Acc65I | GGTACC | 1 cut(s) | 3267 |
| AccB1I | GGYRCC | 3 cut(s) | 1349, 3267, 4907 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 1610, 3640 |
| AccI | GTMKAC | 1 cut(s) | 1309 |
| AccII | CGCG | 1 cut(s) | 2155 |
| AccIII | TCCGGA | 1 cut(s) | 4001 |
| AciI | CCGC | 8 cut(s) | 5, 165, 172, 365, 719, 2793, 3443, 4946 |
| AclI | AACGTT | 1 cut(s) | 5238 |
| AcoI | YGGCCR | 2 cut(s) | 2407, 2794 |
| AcuI | CTGAAG | 7 cut(s) | 386, 1145, 2685, 4421, 5105, 5160, 5247 |
| AcyI | GRCGYC | 2 cut(s) | 20, 2496 |
| AdeI | CACNNNGTG | 1 cut(s) | 2120 |
| AfaI | GTAC | 5 cut(s) | 856, 1422, 2734, 3269, 4445 |
| AflII | CTTAAG | 1 cut(s) | 3883 |
| AflIII | ACRYGT | 1 cut(s) | 522 |
| AgeI | ACCGGT | 2 cut(s) | 63, 4241 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 2149 |
| AhlI | ACTAGT | 3 cut(s) | 3259, 3325, 4051 |
| AjiI | CACGTC | 2 cut(s) | 2441, 5254 |
| AjnI | CCWGG | 7 cut(s) | 389, 510, 586, 3453, 4606, 4897, 5244 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 2927, 2959 |
| Alw21I | GWGCWC | 3 cut(s) | 711, 2116, 3074 |
| Alw26I | GTCTC | 4 cut(s) | 2219, 3530, 3610, 5261 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 2552, 2884 |
| Ama87I | CYCGRG | 2 cut(s) | 1021, 1863 |
| Aor13HI | TCCGGA | 1 cut(s) | 4001 |
| ApaI | GGGCCC | 1 cut(s) | 1103 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 1564, 1596, 2486, 2518 |
| AsiGI | ACCGGT | 2 cut(s) | 63, 4241 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 3024 |
| Asp718I | GGTACC | 1 cut(s) | 3267 |
| AspLEI | GCGC | 2 cut(s) | 1221, 3414 |
| AsuC2I | CCSGG | 3 cut(s) | 1864, 1865, 3403 |
| AsuII | TTCGAA | 1 cut(s) | 3544 |
| AsuNHI | GCTAGC | 1 cut(s) | 79 |
| AvaI | CYCGRG | 2 cut(s) | 1021, 1863 |
| AvaII | GGWCC | 6 cut(s) | 61, 331, 2947, 3364, 3814, 3999 |
| AxyI | CCTNAGG | 1 cut(s) | 2260 |
| BaeGI | GKGCMC | 2 cut(s) | 1103, 1354 |
| BalI | TGGCCA | 1 cut(s) | 2409 |
| BamHI | GGATCC | 1 cut(s) | 3398 |
| BanI | GGYRCC | 3 cut(s) | 1349, 3267, 4907 |
| BanII | GRGCYC | 2 cut(s) | 711, 1103 |
| BbsI | GAAGAC | 4 cut(s) | 1785, 2086, 3018, 4554 |
| Bbv12I | GWGCWC | 3 cut(s) | 711, 2116, 3074 |
| BccI | CCATC | 9 cut(s) | 316, 1363, 1434, 1525, 1559, 2584, 3100, 3665, 4898 |
| BceAI | ACGGC | 2 cut(s) | 152, 3552 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 461, 495, 1841, 1875 |
| BciT130I | CCWGG | 7 cut(s) | 391, 512, 588, 3455, 4608, 4899, 5246 |
| BciVI | GTATCC | 1 cut(s) | 1969 |
| BclI | TGATCA | 2 cut(s) | 1081, 3469 |
| BcnI | CCSGG | 3 cut(s) | 1864, 1865, 3403 |
| BcoDI | GTCTC | 4 cut(s) | 2219, 3530, 3610, 5261 |
| BcuI | ACTAGT | 3 cut(s) | 3259, 3325, 4051 |
| BfmI | CTRYAG | 6 cut(s) | 690, 738, 1989, 2139, 2553, 4227 |
| BfoI | RGCGCY | 1 cut(s) | 3415 |
| BfrI | CTTAAG | 1 cut(s) | 3883 |
| BfuI | GTATCC | 1 cut(s) | 1969 |
| BglII | AGATCT | 1 cut(s) | 3118 |
| BlpI | GCTNAGC | 1 cut(s) | 3207 |
| Bme18I | GGWCC | 6 cut(s) | 61, 331, 2947, 3364, 3814, 3999 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 2149 |
| BmeT110I | CYCGRG | 2 cut(s) | 1021, 1863 |
| BmgBI | CACGTC | 2 cut(s) | 2441, 5254 |
| BmiI | GGNNCC | 7 cut(s) | 702, 1101, 1351, 3269, 3400, 3975, 4909 |
| BmtI | GCTAGC | 1 cut(s) | 83 |
| BpiI | GAAGAC | 4 cut(s) | 1785, 2086, 3018, 4554 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 2873, 2905, 3996, 4028 |
| BpmI | CTGGAG | 1 cut(s) | 1397 |
| Bpu10I | CCTNAGC | 2 cut(s) | 705, 1946 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 3207 |
| Bpu14I | TTCGAA | 1 cut(s) | 3544 |
| BpuEI | CTTGAG | 7 cut(s) | 206, 1386, 1559, 3830, 3896, 4339, 5127 |
| BpuMI | CCSGG | 3 cut(s) | 1864, 1865, 3403 |
| BsaAI | YACGTR | 1 cut(s) | 202 |
| BsaBI | GATNNNNATC | 1 cut(s) | 4489 |
| BsaHI | GRCGYC | 2 cut(s) | 20, 2496 |
| BsaI | GGTCTC | 1 cut(s) | 5261 |
| BsaJI | CCNNGG | 9 cut(s) | 510, 1863, 1872, 2484, 3454, 3519, 3817, 5066, 5244 |
| BsaWI | WCCGGW | 3 cut(s) | 63, 4001, 4241 |
| Bse118I | RCCGGY | 3 cut(s) | 63, 942, 4241 |
| Bse1I | ACTGG | 4 cut(s) | 2241, 2546, 2977, 4115 |
| Bse21I | CCTNAGG | 1 cut(s) | 2260 |
| Bse3DI | GCAATG | 4 cut(s) | 333, 1468, 2937, 3097 |
| Bse8I | GATNNNNATC | 1 cut(s) | 4489 |
| BseAI | TCCGGA | 1 cut(s) | 4001 |
| BseBI | CCWGG | 7 cut(s) | 391, 512, 588, 3455, 4608, 4899, 5246 |
| BseDI | CCNNGG | 9 cut(s) | 510, 1863, 1872, 2484, 3454, 3519, 3817, 5066, 5244 |
| BseJI | GATNNNNATC | 1 cut(s) | 4489 |
| BseMI | GCAATG | 4 cut(s) | 333, 1468, 2937, 3097 |
| BseNI | ACTGG | 4 cut(s) | 2241, 2546, 2977, 4115 |
| BseSI | GKGCMC | 2 cut(s) | 1103, 1354 |
| BseYI | CCCAGC | 2 cut(s) | 1290, 2803 |
| BsgI | GTGCAG | 7 cut(s) | 357, 2142, 2214, 3314, 3762, 4191, 5070 |
| Bsh1236I | CGCG | 1 cut(s) | 2155 |
| BshNI | GGYRCC | 3 cut(s) | 1349, 3267, 4907 |
| BshTI | ACCGGT | 2 cut(s) | 63, 4241 |
| BsiHKAI | GWGCWC | 3 cut(s) | 711, 2116, 3074 |
| BsiHKCI | CYCGRG | 2 cut(s) | 1021, 1863 |
| BsiSI | CCGG | 7 cut(s) | 64, 899, 943, 1864, 3403, 4002, 4242 |
| BslFI | GGGAC | 2 cut(s) | 1187, 5336 |
| BsmAI | GTCTC | 4 cut(s) | 2219, 3530, 3610, 5261 |
| BsmFI | GGGAC | 2 cut(s) | 1187, 5336 |
| BsmI | GAATGC | 3 cut(s) | 306, 584, 5225 |
| Bso31I | GGTCTC | 1 cut(s) | 5261 |
| BsoBI | CYCGRG | 2 cut(s) | 1021, 1863 |
| Bsp119I | TTCGAA | 1 cut(s) | 3544 |
| Bsp120I | GGGCCC | 1 cut(s) | 1099 |
| Bsp1286I | GDGCHC | 5 cut(s) | 711, 1103, 1354, 2116, 3074 |
| Bsp13I | TCCGGA | 1 cut(s) | 4001 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 3207 |
| Bsp19I | CCATGG | 2 cut(s) | 3519, 5066 |
| Bsp68I | TCGCGA | 1 cut(s) | 2155 |
| BspACI | CCGC | 8 cut(s) | 5, 165, 172, 365, 719, 2793, 3443, 4946 |
| BspEI | TCCGGA | 1 cut(s) | 4001 |
| BspFNI | CGCG | 1 cut(s) | 2155 |
| BspHI | TCATGA | 1 cut(s) | 1575 |
| BspLI | GGNNCC | 7 cut(s) | 702, 1101, 1351, 3269, 3400, 3975, 4909 |
| BspMAI | CTGCAG | 3 cut(s) | 1993, 2143, 2557 |
| BspOI | GCTAGC | 1 cut(s) | 83 |
| BspQI | GCTCTTC | 1 cut(s) | 4401 |
| BspT104I | TTCGAA | 1 cut(s) | 3544 |
| BspT107I | GGYRCC | 3 cut(s) | 1349, 3267, 4907 |
| BspTI | CTTAAG | 1 cut(s) | 3883 |
| BspTNI | GGTCTC | 1 cut(s) | 5261 |
| BsrDI | GCAATG | 4 cut(s) | 333, 1468, 2937, 3097 |
| BsrFI | RCCGGY | 3 cut(s) | 63, 942, 4241 |
| BsrI | ACTGG | 4 cut(s) | 2241, 2546, 2977, 4115 |
| BssAI | RCCGGY | 3 cut(s) | 63, 942, 4241 |
| BssECI | CCNNGG | 9 cut(s) | 510, 1863, 1872, 2484, 3454, 3519, 3817, 5066, 5244 |
| BssNAI | GTATAC | 1 cut(s) | 1310 |
| BssNI | GRCGYC | 2 cut(s) | 20, 2496 |
| BssT1I | CCWWGG | 5 cut(s) | 1872, 2484, 3519, 3817, 5066 |
| Bst1107I | GTATAC | 1 cut(s) | 1310 |
| Bst2UI | CCWGG | 7 cut(s) | 391, 512, 588, 3455, 4608, 4899, 5246 |
| Bst6I | CTCTTC | 5 cut(s) | 36, 405, 2978, 4389, 4401 |
| BstACI | GRCGYC | 2 cut(s) | 20, 2496 |
| BstAFI | CTTAAG | 1 cut(s) | 3883 |
| BstAPI | GCANNNNNTGC | 7 cut(s) | 908, 2120, 3221, 3740, 3749, 3851, 4652 |
| BstBAI | YACGTR | 1 cut(s) | 202 |
| BstBI | TTCGAA | 1 cut(s) | 3544 |
| BstDSI | CCRYGG | 2 cut(s) | 3519, 5066 |
| BstEII | GGTNACC | 1 cut(s) | 4808 |
| BstFNI | CGCG | 1 cut(s) | 2155 |
| BstH2I | RGCGCY | 1 cut(s) | 3415 |
| BstHHI | GCGC | 2 cut(s) | 1221, 3414 |
| BstMAI | GTCTC | 4 cut(s) | 2219, 3530, 3610, 5261 |
| BstNI | CCWGG | 7 cut(s) | 391, 512, 588, 3455, 4608, 4899, 5246 |
| BstNSI | RCATGY | 9 cut(s) | 1225, 1829, 1862, 3790, 3845, 4190, 4740, 5036, 5162 |
| BstPI | GGTNACC | 1 cut(s) | 4808 |
| BstSFI | CTRYAG | 6 cut(s) | 690, 738, 1989, 2139, 2553, 4227 |
| BstSLI | GKGCMC | 2 cut(s) | 1103, 1354 |
| BstUI | CGCG | 1 cut(s) | 2155 |
| BstV2I | GAAGAC | 4 cut(s) | 1785, 2086, 3018, 4554 |
| BstX2I | RGATCY | 7 cut(s) | 669, 863, 1372, 1892, 3118, 3139, 3398 |
| BstYI | RGATCY | 7 cut(s) | 669, 863, 1372, 1892, 3118, 3139, 3398 |
| BstZ17I | GTATAC | 1 cut(s) | 1310 |
| Bsu36I | CCTNAGG | 1 cut(s) | 2260 |
| BsuI | GTATCC | 1 cut(s) | 1969 |
| BtgI | CCRYGG | 2 cut(s) | 3519, 5066 |
| BtgZI | GCGATG | 2 cut(s) | 105, 2382 |
| BtrI | CACGTC | 2 cut(s) | 2441, 5254 |
| BtsI | GCAGTG | 1 cut(s) | 1335 |
| BtuMI | TCGCGA | 1 cut(s) | 2155 |
| CaiI | CAGNNNCTG | 2 cut(s) | 2552, 2884 |
| CciI | TCATGA | 1 cut(s) | 1575 |
| CfoI | GCGC | 2 cut(s) | 1221, 3414 |
| Cfr10I | RCCGGY | 3 cut(s) | 63, 942, 4241 |
| Cfr9I | CCCGGG | 1 cut(s) | 1863 |
| CpoI | CGGWCCG | 1 cut(s) | 3999 |
| CseI | GACGC | 4 cut(s) | 9, 695, 1250, 5417 |
| Csp6I | GTAC | 5 cut(s) | 855, 1421, 2733, 3268, 4444 |
| CspAI | ACCGGT | 2 cut(s) | 63, 4241 |
| CspI | CGGWCCG | 1 cut(s) | 3999 |
| CviQI | GTAC | 5 cut(s) | 855, 1421, 2733, 3268, 4444 |
| DraI | TTTAAA | 2 cut(s) | 1066, 4182 |
| DraIII | CACNNNGTG | 1 cut(s) | 2120 |
| DriI | GACNNNNNGTC | 1 cut(s) | 2149 |
| EaeI | YGGCCR | 2 cut(s) | 2407, 2794 |
| Eam1104I | CTCTTC | 5 cut(s) | 36, 405, 2978, 4389, 4401 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 2149 |
| EarI | CTCTTC | 5 cut(s) | 36, 405, 2978, 4389, 4401 |
| EciI | GGCGGA | 2 cut(s) | 20, 154 |
| Ecl136II | GAGCTC | 1 cut(s) | 709 |
| Eco130I | CCWWGG | 5 cut(s) | 1872, 2484, 3519, 3817, 5066 |
| Eco147I | AGGCCT | 1 cut(s) | 3051 |
| Eco24I | GRGCYC | 2 cut(s) | 711, 1103 |
| Eco31I | GGTCTC | 1 cut(s) | 5261 |
| Eco32I | GATATC | 2 cut(s) | 3448, 4322 |
| Eco47I | GGWCC | 6 cut(s) | 61, 331, 2947, 3364, 3814, 3999 |
| Eco53kI | GAGCTC | 1 cut(s) | 709 |
| Eco57I | CTGAAG | 7 cut(s) | 386, 1145, 2685, 4421, 5105, 5160, 5247 |
| Eco81I | CCTNAGG | 1 cut(s) | 2260 |
| Eco88I | CYCGRG | 2 cut(s) | 1021, 1863 |
| Eco91I | GGTNACC | 1 cut(s) | 4808 |
| EcoICRI | GAGCTC | 1 cut(s) | 709 |
| EcoO109I | RGGNCCY | 2 cut(s) | 1100, 1543 |
| EcoO65I | GGTNACC | 1 cut(s) | 4808 |
| EcoRI | GAATTC | 2 cut(s) | 1046, 1119 |
| EcoRII | CCWGG | 7 cut(s) | 389, 510, 586, 3453, 4606, 4897, 5244 |
| EcoRV | GATATC | 2 cut(s) | 3448, 4322 |
| EcoT14I | CCWWGG | 5 cut(s) | 1872, 2484, 3519, 3817, 5066 |
| EcoT22I | ATGCAT | 3 cut(s) | 1276, 5225, 5405 |
| EcoT38I | GRGCYC | 2 cut(s) | 711, 1103 |
| ErhI | CCWWGG | 5 cut(s) | 1872, 2484, 3519, 3817, 5066 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 909, 941, 3221, 3253 |
| FaqI | GGGAC | 2 cut(s) | 1187, 5336 |
| FauNDI | CATATG | 2 cut(s) | 2412, 3314 |
| FbaI | TGATCA | 2 cut(s) | 1081, 3469 |
| FblI | GTMKAC | 1 cut(s) | 1309 |
| FriOI | GRGCYC | 2 cut(s) | 711, 1103 |
| GlaI | GCGC | 2 cut(s) | 1220, 3413 |
| GsaI | CCCAGC | 2 cut(s) | 1294, 2807 |
| GsuI | CTGGAG | 1 cut(s) | 1397 |
| HaeII | RGCGCY | 1 cut(s) | 3415 |
| HapII | CCGG | 7 cut(s) | 64, 899, 943, 1864, 3403, 4002, 4242 |
| HgaI | GACGC | 4 cut(s) | 9, 695, 1250, 5417 |
| HhaI | GCGC | 2 cut(s) | 1221, 3414 |
| Hin1I | GRCGYC | 2 cut(s) | 20, 2496 |
| Hin6I | GCGC | 2 cut(s) | 1219, 3412 |
| HinP1I | GCGC | 2 cut(s) | 1219, 3412 |
| HincII | GTYRAC | 3 cut(s) | 1779, 1969, 2962 |
| HindII | GTYRAC | 3 cut(s) | 1779, 1969, 2962 |
| HindIII | AAGCTT | 5 cut(s) | 122, 776, 1682, 3728, 3872 |
| HpaI | GTTAAC | 1 cut(s) | 2962 |
| HpaII | CCGG | 7 cut(s) | 64, 899, 943, 1864, 3403, 4002, 4242 |
| Hpy166II | GTNNAC | 9 cut(s) | 205, 239, 1310, 1779, 1969, 2000, 2861, 2962, 5251 |
| Hpy8I | GTNNAC | 9 cut(s) | 205, 239, 1310, 1779, 1969, 2000, 2861, 2962, 5251 |
| Hpy99I | CGWCG | 3 cut(s) | 31, 5258, 5411 |
| Hsp92I | GRCGYC | 2 cut(s) | 20, 2496 |
| HspAI | GCGC | 2 cut(s) | 1219, 3412 |
| Kpn2I | TCCGGA | 1 cut(s) | 4001 |
| KpnI | GGTACC | 1 cut(s) | 3271 |
| Ksp22I | TGATCA | 2 cut(s) | 1081, 3469 |
| KspAI | GTTAAC | 1 cut(s) | 2962 |
| LguI | GCTCTTC | 1 cut(s) | 4401 |
| MfeI | CAATTG | 5 cut(s) | 1200, 1887, 2646, 3894, 3968 |
| MflI | RGATCY | 7 cut(s) | 669, 863, 1372, 1892, 3118, 3139, 3398 |
| MhlI | GDGCHC | 5 cut(s) | 711, 1103, 1354, 2116, 3074 |
| MlsI | TGGCCA | 1 cut(s) | 2409 |
| MluNI | TGGCCA | 1 cut(s) | 2409 |
| MmeI | TCCRAC | 4 cut(s) | 15, 123, 130, 228 |
| Mox20I | TGGCCA | 1 cut(s) | 2409 |
| Mph1103I | ATGCAT | 3 cut(s) | 1276, 5225, 5405 |
| MroI | TCCGGA | 1 cut(s) | 4001 |
| MroXI | GAANNNNTTC | 1 cut(s) | 3024 |
| MscI | TGGCCA | 1 cut(s) | 2409 |
| Msp20I | TGGCCA | 1 cut(s) | 2409 |
| MspA1I | CMGCKG | 2 cut(s) | 1505, 2033 |
| MspCI | CTTAAG | 1 cut(s) | 3883 |
| MspI | CCGG | 7 cut(s) | 64, 899, 943, 1864, 3403, 4002, 4242 |
| MunI | CAATTG | 5 cut(s) | 1200, 1887, 2646, 3894, 3968 |
| Mva1269I | GAATGC | 3 cut(s) | 306, 584, 5225 |
| MvaI | CCWGG | 7 cut(s) | 391, 512, 588, 3455, 4608, 4899, 5246 |
| MvnI | CGCG | 1 cut(s) | 2155 |
| NciI | CCSGG | 3 cut(s) | 1864, 1865, 3403 |
| NcoI | CCATGG | 2 cut(s) | 3519, 5066 |
| NdeI | CATATG | 2 cut(s) | 2412, 3314 |
| NheI | GCTAGC | 1 cut(s) | 79 |
| NlaIV | GGNNCC | 7 cut(s) | 702, 1101, 1351, 3269, 3400, 3975, 4909 |
| NmeAIII | GCCGAG | 1 cut(s) | 55 |
| NmuCI | GTSAC | 8 cut(s) | 197, 452, 616, 1128, 2264, 2548, 3306, 3554 |
| NruI | TCGCGA | 1 cut(s) | 2155 |
| NsiI | ATGCAT | 3 cut(s) | 1276, 5225, 5405 |
| NspI | RCATGY | 9 cut(s) | 1225, 1829, 1862, 3790, 3845, 4190, 4740, 5036, 5162 |
| NspV | TTCGAA | 1 cut(s) | 3544 |
| PaeI | GCATGC | 6 cut(s) | 1225, 1862, 3790, 3845, 4190, 4740 |
| PaeR7I | CTCGAG | 1 cut(s) | 1021 |
| PagI | TCATGA | 1 cut(s) | 1575 |
| PceI | AGGCCT | 1 cut(s) | 3051 |
| PciSI | GCTCTTC | 1 cut(s) | 4401 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 23 |
| PctI | GAATGC | 3 cut(s) | 306, 584, 5225 |
| PdmI | GAANNNNTTC | 1 cut(s) | 3024 |
| PflFI | GACNNNGTC | 1 cut(s) | 31 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 1610, 3640 |
| PinAI | ACCGGT | 2 cut(s) | 63, 4241 |
| Ppu21I | YACGTR | 1 cut(s) | 202 |
| PsiI | TTATAA | 1 cut(s) | 3129 |
| Psp124BI | GAGCTC | 1 cut(s) | 711 |
| Psp1406I | AACGTT | 1 cut(s) | 5238 |
| Psp6I | CCWGG | 7 cut(s) | 389, 510, 586, 3453, 4606, 4897, 5244 |
| PspEI | GGTNACC | 1 cut(s) | 4808 |
| PspFI | CCCAGC | 2 cut(s) | 1290, 2803 |
| PspGI | CCWGG | 7 cut(s) | 389, 510, 586, 3453, 4606, 4897, 5244 |
| PspN4I | GGNNCC | 7 cut(s) | 702, 1101, 1351, 3269, 3400, 3975, 4909 |
| PspOMI | GGGCCC | 1 cut(s) | 1099 |
| PspXI | VCTCGAGB | 1 cut(s) | 1021 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 5139, 5171 |
| PstI | CTGCAG | 3 cut(s) | 1993, 2143, 2557 |
| PstNI | CAGNNNCTG | 2 cut(s) | 2552, 2884 |
| PsuI | RGATCY | 7 cut(s) | 669, 863, 1372, 1892, 3118, 3139, 3398 |
| PsyI | GACNNNGTC | 1 cut(s) | 31 |
| PvuII | CAGCTG | 2 cut(s) | 1505, 2033 |
| RruI | TCGCGA | 1 cut(s) | 2155 |
| RsaI | GTAC | 5 cut(s) | 856, 1422, 2734, 3269, 4445 |
| RsaNI | GTAC | 5 cut(s) | 855, 1421, 2733, 3268, 4444 |
| Rsr2I | CGGWCCG | 1 cut(s) | 3999 |
| RsrII | CGGWCCG | 1 cut(s) | 3999 |
| SacI | GAGCTC | 1 cut(s) | 711 |
| SapI | GCTCTTC | 1 cut(s) | 4401 |
| SduI | GDGCHC | 5 cut(s) | 711, 1103, 1354, 2116, 3074 |
| SfcI | CTRYAG | 6 cut(s) | 690, 738, 1989, 2139, 2553, 4227 |
| Sfr274I | CTCGAG | 1 cut(s) | 1021 |
| SfuI | TTCGAA | 1 cut(s) | 3544 |
| SinI | GGWCC | 6 cut(s) | 61, 331, 2947, 3364, 3814, 3999 |
| SlaI | CTCGAG | 1 cut(s) | 1021 |
| SmaI | CCCGGG | 1 cut(s) | 1865 |
| SmlI | CTYRAG | 9 cut(s) | 185, 1021, 1401, 1538, 3809, 3875, 3883, 4354, 5142 |
| SmoI | CTYRAG | 9 cut(s) | 185, 1021, 1401, 1538, 3809, 3875, 3883, 4354, 5142 |
| SpeI | ACTAGT | 3 cut(s) | 3259, 3325, 4051 |
| SphI | GCATGC | 6 cut(s) | 1225, 1862, 3790, 3845, 4190, 4740 |
| SrfI | GCCCGGGC | 1 cut(s) | 1865 |
| SseBI | AGGCCT | 1 cut(s) | 3051 |
| SsiI | CCGC | 8 cut(s) | 5, 165, 172, 365, 719, 2793, 3443, 4946 |
| SspI | AATATT | 1 cut(s) | 2449 |
| SstI | GAGCTC | 1 cut(s) | 711 |
| StuI | AGGCCT | 1 cut(s) | 3051 |
| StyI | CCWWGG | 5 cut(s) | 1872, 2484, 3519, 3817, 5066 |
| TaqII | GACCGA | 1 cut(s) | 3987 |
| TatI | WGTACW | 2 cut(s) | 2732, 4443 |
| TauI | GCSGC | 2 cut(s) | 368, 2796 |
| TseFI | GTSAC | 8 cut(s) | 197, 452, 616, 1128, 2264, 2548, 3306, 3554 |
| Tsp45I | GTSAC | 8 cut(s) | 197, 452, 616, 1128, 2264, 2548, 3306, 3554 |
| TspGWI | ACGGA | 1 cut(s) | 3503 |
| TspMI | CCCGGG | 1 cut(s) | 1863 |
| Tth111I | GACNNNGTC | 1 cut(s) | 31 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 1610, 3640 |
| Vha464I | CTTAAG | 1 cut(s) | 3883 |
| VpaK11BI | GGWCC | 6 cut(s) | 61, 331, 2947, 3364, 3814, 3999 |
| XbaI | TCTAGA | 1 cut(s) | 887 |
| XceI | RCATGY | 9 cut(s) | 1225, 1829, 1862, 3790, 3845, 4190, 4740, 5036, 5162 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 230 |
| XhoI | CTCGAG | 1 cut(s) | 1021 |
| XmaI | CCCGGG | 1 cut(s) | 1863 |
| XmiI | GTMKAC | 1 cut(s) | 1309 |
| XmnI | GAANNNNTTC | 1 cut(s) | 3024 |
| ZraI | GACGTC | 1 cut(s) | 2497 |
| Zsp2I | ATGCAT | 3 cut(s) | 1276, 5225, 5405 |