Prupe.5G028100_v2.0.a1

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0009689
Physical Location & Seq
Reverse (-)
3277329 .. 3282793
5465 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G028100.2

Sequence Viewer

Length: 954 bp
ATGGGGAAGCAGGAAGGTACCTTGTGGGACGATTCAGCTCTGATCAATGCTTTTGACGATGCCATGTCCAGCTACAAGAAAATTCACGGCAAGAAAATGAATGAGGCGTCAACCAAGGAAGAAAAAGTTGCCATCAACACTGCAGAACAAGTCATTACTGAGATTGAAGAAAGTGAGGAGGCTAAAAGACCAGGGGATGCAGATGACCATAGTAATGACACATTGAAGACTACTGCAGAAGCTGGAGAGACCAGTAATATATCAGAAGTGAAAGAAAACCATCATGTAGATTCGCATGTACCTGAGCCCTACTCACAAGTTGCTCAGGATGTGCAAAATGACTATTCATATTCACAAGGTGCAGCAGATTATAACCAGTTACTCAACCAGTATTATGAGGTTGAGGAGAAAAGACAGAAGCTACTAGAGCAGCTTCATCAGTTTGGTGGTTGGAATTATCAATATTCTGGTGAAGTTTCTGGTTCCATTGTACAGGGGGATACTGCTTATAGTTCTCAGCAGCATGCAGTCCCTACATGCCAACCTTCTAATCCAGCTGTTGTCTGCTCATGTTGCCCGTATCTTGGTCAGTGCTTGATGGCTCCATGCATTTCATTTCCTGCTAGTTTACCGGGTGGGTCATGTGCTGGTAGAACTTGTACCAATGCTTGTTTAGCAACAAGCCCTGGGCAATCATTTTCTCTTGAAGATGATCGAATTGTCAAGACGGCAATGGGGACTGCAGAAAGAGCATTATCATCGATGAAAATGAAAATTTCTGGTGATTCTAATATAAGTGAAGATAAAAAGGATGAGAAGCGTGAAGGGGAAATGGCTGAAAGTACTAGCTCTGAGACAGATCTTACTCTTGTATTAAATGCGTGGTATTCTGCAGGTTTCTTTACTGGCAAGTATCTTGTGGAGCAATCTGTTGCAAAGAGGCGACATACTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SMN

Protein Analysis

318

Amino Acids

34.72

Weight (kDa)

4.77

Isoelectric Point (pI)

56.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 372
Acc36I ACCTGC 1 cut(s) 884
Acc65I GGTACC 1 cut(s) 17
AccB1I GGYRCC 1 cut(s) 17
AcsI RAATTY 2 cut(s) 81, 774
AcyI GRCGYC 1 cut(s) 107
AdeI CACNNNGTG 1 cut(s) 359
AfaI GTAC 5 cut(s) 19, 300, 492, 661, 844
AfiI CCNNNNNNNGG 1 cut(s) 584
AgsI TTSAA 3 cut(s) 167, 226, 707
AjnI CCWGG 2 cut(s) 190, 685
AluBI AGCT 7 cut(s) 38, 72, 242, 421, 433, 557, 849
AluI AGCT 7 cut(s) 38, 72, 242, 421, 433, 557, 849
Alw26I GTCTC 2 cut(s) 242, 848
AlwNI CAGNNNCTG 1 cut(s) 242
ApeKI GCWGC 3 cut(s) 362, 430, 520
ApoI RAATTY 2 cut(s) 81, 774
Asp718I GGTACC 1 cut(s) 17
AsuC2I CCSGG 1 cut(s) 633
AsuHPI GGTGA 2 cut(s) 482, 794
BanI GGYRCC 1 cut(s) 17
BanII GRGCYC 1 cut(s) 309
BbsI GAAGAC 1 cut(s) 233
BbvI GCAGC 3 cut(s) 374, 442, 532
BccI CCATC 3 cut(s) 140, 288, 592
BceAI ACGGC 2 cut(s) 103, 744
BcgI CGANNNNNNTGC 2 cut(s) 741, 775
BciT130I CCWGG 2 cut(s) 192, 687
BciVI GTATCC 1 cut(s) 493
BclI TGATCA 1 cut(s) 42
BcnI CCSGG 1 cut(s) 633
BcoDI GTCTC 2 cut(s) 242, 848
BfaI CTAG 3 cut(s) 425, 624, 846
BfmI CTRYAG 4 cut(s) 141, 234, 741, 891
BfuAI ACCTGC 1 cut(s) 884
BfuI GTATCC 1 cut(s) 493
BglII AGATCT 1 cut(s) 859
BisI GCNGC 3 cut(s) 363, 431, 521
BlsI GCNGC 3 cut(s) 364, 432, 522
BmcAI AGTACT 1 cut(s) 844
Bme1390I CCNGG 3 cut(s) 192, 633, 687
BmiI GGNNCC 3 cut(s) 19, 484, 603
BmrFI CCNGG 3 cut(s) 192, 633, 687
BmsI GCATC 2 cut(s) 49, 187
BpiI GAAGAC 1 cut(s) 233
BplI GAGNNNNNCTC 2 cut(s) 296, 328
BpmI CTGGAG 1 cut(s) 264
Bpu10I CCTNAGC 2 cut(s) 303, 324
BpuMI CCSGG 1 cut(s) 633
Bsa29I ATCGAT 1 cut(s) 761
BsaHI GRCGYC 1 cut(s) 107
BsaI GGTCTC 1 cut(s) 242
BsaJI CCNNGG 4 cut(s) 114, 191, 685, 686
Bsc4I CCNNNNNNNGG 1 cut(s) 584
Bse1I ACTGG 4 cut(s) 252, 376, 388, 910
Bse3DI GCAATG 1 cut(s) 738
BseBI CCWGG 2 cut(s) 192, 687
BseCI ATCGAT 1 cut(s) 761
BseDI CCNNGG 4 cut(s) 114, 191, 685, 686
BseGI GGATG 3 cut(s) 202, 334, 817
BseLI CCNNNNNNNGG 1 cut(s) 584
BseMI GCAATG 1 cut(s) 738
BseMII CTCAG 5 cut(s) 150, 294, 338, 530, 843
BseNI ACTGG 4 cut(s) 252, 376, 388, 910
BseRI GAGGAG 2 cut(s) 191, 419
BseXI GCAGC 3 cut(s) 374, 442, 532
BsgI GTGCAG 1 cut(s) 381
BshNI GGYRCC 1 cut(s) 17
BshVI ATCGAT 1 cut(s) 761
BsiSI CCGG 1 cut(s) 632
BslFI GGGAC 3 cut(s) 41, 515, 751
BslI CCNNNNNNNGG 1 cut(s) 584
BsmAI GTCTC 2 cut(s) 242, 848
BsmFI GGGAC 3 cut(s) 41, 515, 751
Bso31I GGTCTC 1 cut(s) 242
Bsp1286I GDGCHC 1 cut(s) 309
Bsp1407I TGTACA 1 cut(s) 490
Bsp143I GATC 3 cut(s) 42, 712, 859
BspCNI CTCAG 5 cut(s) 151, 295, 337, 529, 844
BspDI ATCGAT 1 cut(s) 761
BspLI GGNNCC 3 cut(s) 19, 484, 603
BspMAI CTGCAG 4 cut(s) 145, 238, 745, 895
BspMI ACCTGC 1 cut(s) 884
BspT107I GGYRCC 1 cut(s) 17
BspTNI GGTCTC 1 cut(s) 242
BsrDI GCAATG 1 cut(s) 738
BsrGI TGTACA 1 cut(s) 490
BsrI ACTGG 4 cut(s) 252, 376, 388, 910
BssECI CCNNGG 4 cut(s) 114, 191, 685, 686
BssMI GATC 3 cut(s) 42, 712, 859
BssNI GRCGYC 1 cut(s) 107
BssT1I CCWWGG 1 cut(s) 114
Bst2UI CCWGG 2 cut(s) 192, 687
BstACI GRCGYC 1 cut(s) 107
BstAUI TGTACA 1 cut(s) 490
BstC8I GCNNGC 1 cut(s) 525
BstDEI CTNAG 6 cut(s) 159, 303, 324, 516, 852, 951
BstF5I GGATG 3 cut(s) 202, 334, 817
BstKTI GATC 3 cut(s) 45, 715, 862
BstMAI GTCTC 2 cut(s) 242, 848
BstMBI GATC 3 cut(s) 42, 712, 859
BstMWI GCNNNNNNNGC 4 cut(s) 427, 573, 674, 749
BstNI CCWGG 2 cut(s) 192, 687
BstNSI RCATGY 3 cut(s) 299, 527, 540
BstSCI CCNGG 3 cut(s) 190, 631, 685
BstSFI CTRYAG 4 cut(s) 141, 234, 741, 891
BstV1I GCAGC 3 cut(s) 374, 442, 532
BstV2I GAAGAC 1 cut(s) 233
BstX2I RGATCY 1 cut(s) 859
BstYI RGATCY 1 cut(s) 859
Bsu15I ATCGAT 1 cut(s) 761
BsuI GTATCC 1 cut(s) 493
BsuTUI ATCGAT 1 cut(s) 761
BtsCI GGATG 3 cut(s) 202, 334, 817
BtsI GCAGTG 1 cut(s) 138
BtsIMutI CAGTG 2 cut(s) 138, 596
BveI ACCTGC 1 cut(s) 884
Cac8I GCNNGC 1 cut(s) 525
CaiI CAGNNNCTG 1 cut(s) 242
ClaI ATCGAT 1 cut(s) 761
CseI GACGC 1 cut(s) 96
Csp6I GTAC 5 cut(s) 18, 299, 491, 660, 843
CviAII CATG 8 cut(s) 64, 284, 296, 524, 537, 570, 606, 642
CviQI GTAC 5 cut(s) 18, 299, 491, 660, 843
DdeI CTNAG 6 cut(s) 159, 303, 324, 516, 852, 951
DpnI GATC 3 cut(s) 44, 714, 861
DpnII GATC 3 cut(s) 42, 712, 859
DraIII CACNNNGTG 1 cut(s) 359
Eco130I CCWWGG 1 cut(s) 114
Eco24I GRGCYC 1 cut(s) 309
Eco31I GGTCTC 1 cut(s) 242
EcoRII CCWGG 2 cut(s) 190, 685
EcoT14I CCWWGG 1 cut(s) 114
EcoT22I ATGCAT 1 cut(s) 611
EcoT38I GRGCYC 1 cut(s) 309
ErhI CCWWGG 1 cut(s) 114
FaeI CATG 8 cut(s) 67, 287, 299, 527, 540, 573, 609, 645
FaqI GGGAC 3 cut(s) 41, 515, 751
FatI CATG 8 cut(s) 63, 283, 295, 523, 536, 569, 605, 641
FbaI TGATCA 1 cut(s) 42
Fnu4HI GCNGC 3 cut(s) 363, 431, 521
FokI GGATG 3 cut(s) 209, 341, 824
FriOI GRGCYC 1 cut(s) 309
Fsp4HI GCNGC 3 cut(s) 363, 431, 521
FspBI CTAG 3 cut(s) 425, 624, 846
GluI GCNGC 3 cut(s) 363, 431, 521
GsuI CTGGAG 1 cut(s) 264
HapII CCGG 1 cut(s) 632
HgaI GACGC 1 cut(s) 96
Hin1I GRCGYC 1 cut(s) 107
Hin1II CATG 8 cut(s) 67, 287, 299, 527, 540, 573, 609, 645
HincII GTYRAC 1 cut(s) 111
HindII GTYRAC 1 cut(s) 111
HinfI GANTC 3 cut(s) 32, 290, 785
HpaII CCGG 1 cut(s) 632
HphI GGTGA 2 cut(s) 482, 794
Hpy166II GTNNAC 2 cut(s) 111, 629
Hpy188I TCNGA 3 cut(s) 42, 265, 853
Hpy188III TCNNGA 3 cut(s) 326, 704, 724
Hpy8I GTNNAC 2 cut(s) 111, 629
HpyAV CCTTC 3 cut(s) 8, 555, 818
HpyF10VI GCNNNNNNNGC 4 cut(s) 427, 573, 674, 749
HpyF3I CTNAG 6 cut(s) 159, 303, 324, 516, 852, 951
Hsp92I GRCGYC 1 cut(s) 107
Hsp92II CATG 8 cut(s) 67, 287, 299, 527, 540, 573, 609, 645
KpnI GGTACC 1 cut(s) 21
Ksp22I TGATCA 1 cut(s) 42
Kzo9I GATC 3 cut(s) 42, 712, 859
LmnI GCTCC 2 cut(s) 607, 922
Lsp1109I GCAGC 3 cut(s) 374, 442, 532
LweI GCATC 2 cut(s) 49, 187
MaeI CTAG 3 cut(s) 425, 624, 846
MaeIII GTNAC 1 cut(s) 378
MalI GATC 3 cut(s) 44, 714, 861
MboI GATC 3 cut(s) 42, 712, 859
MboII GAAGA 5 cut(s) 131, 179, 238, 719, 812
MflI RGATCY 1 cut(s) 859
MhlI GDGCHC 1 cut(s) 309
MluCI AATT 4 cut(s) 81, 454, 717, 774
MmeI TCCRAC 1 cut(s) 431
MnlI CCTC 6 cut(s) 97, 169, 172, 391, 397, 933
Mph1103I ATGCAT 1 cut(s) 611
MseI TTAA 1 cut(s) 875
MslI CAYNNNNRTG 1 cut(s) 213
MspA1I CMGCKG 1 cut(s) 557
MspI CCGG 1 cut(s) 632
MspR9I CCNGG 3 cut(s) 192, 633, 687
MvaI CCWGG 2 cut(s) 192, 687
MwoI GCNNNNNNNGC 4 cut(s) 427, 573, 674, 749
NciI CCSGG 1 cut(s) 633
NdeII GATC 3 cut(s) 42, 712, 859
NlaIII CATG 8 cut(s) 67, 287, 299, 527, 540, 573, 609, 645
NlaIV GGNNCC 3 cut(s) 19, 484, 603
NsiI ATGCAT 1 cut(s) 611
NspI RCATGY 3 cut(s) 299, 527, 540
PaeI GCATGC 1 cut(s) 527
PasI CCCWGGG 1 cut(s) 686
PfeI GAWTC 3 cut(s) 32, 290, 785
PkrI GCNGC 3 cut(s) 364, 432, 522
PsiI TTATAA 1 cut(s) 372
Psp6I CCWGG 2 cut(s) 190, 685
PspGI CCWGG 2 cut(s) 190, 685
PspN4I GGNNCC 3 cut(s) 19, 484, 603
PstI CTGCAG 4 cut(s) 145, 238, 745, 895
PstNI CAGNNNCTG 1 cut(s) 242
PsuI RGATCY 1 cut(s) 859
PvuII CAGCTG 1 cut(s) 557
RsaI GTAC 5 cut(s) 19, 300, 492, 661, 844
RsaNI GTAC 5 cut(s) 18, 299, 491, 660, 843
RseI CAYNNNNRTG 1 cut(s) 213
SaqAI TTAA 1 cut(s) 875
SatI GCNGC 3 cut(s) 363, 431, 521
Sau3AI GATC 3 cut(s) 42, 712, 859
ScaI AGTACT 1 cut(s) 844
ScrFI CCNGG 3 cut(s) 192, 633, 687
SduI GDGCHC 1 cut(s) 309
SfaNI GCATC 2 cut(s) 49, 187
SfcI CTRYAG 4 cut(s) 141, 234, 741, 891
SmiMI CAYNNNNRTG 1 cut(s) 213
SphI GCATGC 1 cut(s) 527
Sse9I AATT 4 cut(s) 81, 454, 717, 774
SspI AATATT 1 cut(s) 464
SspMI CTAG 3 cut(s) 425, 624, 846
StyD4I CCNGG 3 cut(s) 190, 631, 685
StyI CCWWGG 1 cut(s) 114
TaqI TCGA 2 cut(s) 715, 761
TasI AATT 4 cut(s) 81, 454, 717, 774
TatI WGTACW 2 cut(s) 490, 842
TfiI GAWTC 3 cut(s) 32, 290, 785
Tru1I TTAA 1 cut(s) 875
Tru9I TTAA 1 cut(s) 875
TscAI CASTG 2 cut(s) 145, 596
TseI GCWGC 3 cut(s) 362, 430, 520
TspDTI ATGAA 6 cut(s) 113, 336, 425, 603, 779, 785
TspRI CASTG 2 cut(s) 145, 596
XapI RAATTY 2 cut(s) 81, 774
XceI RCATGY 3 cut(s) 299, 527, 540
XspI CTAG 3 cut(s) 425, 624, 846
ZrmI AGTACT 1 cut(s) 844
Zsp2I ATGCAT 1 cut(s) 611
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.