Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0009689

Physical Location & Seq

Genomic Coordinates Forward (+)

26757612 .. 26762431

Gene Structure 4820 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG261500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 867 bp

ATGCATAGCAAGAAACCCACTCAAGGTCCAACCCAGGAACACAAACTTGTGAGCAGTCCCGAAGAACAAGTCATTGTTGAGGCTGGTGAAACCCAGGAGGCTAAAAGAATACAAGGGGATGCAGATGACCCGACAAAAGATGAGAAGACTACTATGGAAATGGGAGAGACCAGTAATCTTTCAGAAGCTAAAGAAAATCATTGTTTAGATTCATATGTACCTGACCCCTATTCACAAGATGCTCAGGACATGCAAAACAACTATTCATATTCAGAAGGTGGAGAAGATTATACAAATTTACTCAACCAGTATTATGAGATTGAGGAGAAAAGACAGAAGATTCTAGAGAAACTTCATCAATTTGGTGGTGGGAATTACCAGTATTCTGGCGAAGGTTCAGGTTCAGGTTCTGGTGTACAGTGGGGTACTGTTTCTAGTTATGAACAAAATGCAGTCCCTGCTAGCCAACCTTCTGATCCGGCTGTTGTGGGTTCATGTTGCCCGTACATGTGTCCGTGCTTGATGACTGCATGCACTGCATTTCCTGCTTGTCCGTTGGATTCGACATGTGCTGGTATAACTTGTACGGAAGCTTGTTTGGCAACAAGTAATGGGAAACCATTATCTCTTGAAGATAGAAAAATTGTCAAGACAGCATTTGGGACTGCAGAAAGAGCATTATCATCCATGAAAACAAATATTACTGTTGATTCTAGTAAAAGTGAAGAGAAAGATGAATCAGAAATGGCTGAAACTACTGGCTCAGAGACAGATATCAGTGTGGTACTGAATGCATGGTATTCCGCAGGTTTCTACACTGGCAAGTATCTTGTGGAGCAATCCATTGCAAAGAAGCGACAAAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SMN

Protein Analysis

288

Amino Acids

31.34

Weight (kDa)

4.57

Isoelectric Point (pI)

55.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009689)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g23080 FvH4_5g23080 FvH4_5g23080 FvH4_5g23080 FvH4_5g23080 FvH4_5g23080
malus_domestica	MD06G1026300.v1.1
prunus_persica	Prupe.5G028100_v2.0.a1 Prupe.5G028100_v2.0.a1
pyrus_communis	pycom06g02150
rosa_chinensis	RchiOBHm_Chr7g0211801
rosa_laevigata	RLG00000002968
rosa_multiflora	Rmu_sc0009005.1_g000014 Rmu_sc0017926.1_g000001
rosa_roxburghii	Rroxscaffold_3G00247420
rosa_rugosa	Rorug07G0128800 Rorug07G0128800
rosa_samantha	Rh7AG261500 Rh7BG255100 Rh7CG278100 Rh7DG268100
rosa_wichuraiana	Rw7G022300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	797
AciI	CCGC	1 cut(s)	804
AclWI	GGATC	1 cut(s)	470
AcsI	RAATTY	1 cut(s)	295
AfaI	GTAC	6 cut(s)	219, 417, 427, 506, 586, 786
AfiI	CCNNNNNNNGG	1 cut(s)	23
AflIII	ACRYGT	2 cut(s)	507, 566
AgsI	TTSAA	1 cut(s)	632
AjnI	CCWGG	2 cut(s)	33, 93
AluBI	AGCT	2 cut(s)	188, 593
AluI	AGCT	2 cut(s)	188, 593
Alw26I	GTCTC	2 cut(s)	161, 761
AlwI	GGATC	1 cut(s)	470
AlwNI	CAGNNNCTG	2 cut(s)	410, 458
ApoI	RAATTY	1 cut(s)	295
ArsI	GACNNNNNNTTYG	2 cut(s)	54, 86
AspS9I	GGNCC	1 cut(s)	26
AsuHPI	GGTGA	1 cut(s)	98
AsuNHI	GCTAGC	1 cut(s)	461
AvaII	GGWCC	1 cut(s)	26
BbsI	GAAGAC	1 cut(s)	152
BciT130I	CCWGG	2 cut(s)	35, 95
BcoDI	GTCTC	2 cut(s)	161, 761
BfaI	CTAG	4 cut(s)	344, 435, 462, 714
BfmI	CTRYAG	1 cut(s)	666
BfuAI	ACCTGC	1 cut(s)	797
Bme1390I	CCNGG	2 cut(s)	35, 95
Bme18I	GGWCC	1 cut(s)	26
BmgT120I	GGNCC	1 cut(s)	26
BmrFI	CCNGG	2 cut(s)	35, 95
BmsI	GCATC	2 cut(s)	109, 229
BmtI	GCTAGC	1 cut(s)	465
BpiI	GAAGAC	1 cut(s)	152
Bpu10I	CCTNAGC	1 cut(s)	243
BpuEI	CTTGAG	1 cut(s)	6
BsaI	GGTCTC	1 cut(s)	161
BsaJI	CCNNGG	2 cut(s)	33, 93
Bsc4I	CCNNNNNNNGG	1 cut(s)	23
Bse1I	ACTGG	5 cut(s)	171, 307, 379, 763, 823
Bse3DI	GCAATG	1 cut(s)	843
BseBI	CCWGG	2 cut(s)	35, 95
BseDI	CCNNGG	2 cut(s)	33, 93
BseGI	GGATG	2 cut(s)	124, 683
BseLI	CCNNNNNNNGG	1 cut(s)	23
BseMI	GCAATG	1 cut(s)	843
BseMII	CTCAG	2 cut(s)	257, 777
BseNI	ACTGG	5 cut(s)	171, 307, 379, 763, 823
BseRI	GAGGAG	1 cut(s)	338
BsiSI	CCGG	1 cut(s)	479
BslFI	GGGAC	3 cut(s)	42, 440, 676
BslI	CCNNNNNNNGG	1 cut(s)	23
BsmAI	GTCTC	2 cut(s)	161, 761
BsmFI	GGGAC	3 cut(s)	42, 440, 676
BsmI	GAATGC	1 cut(s)	796
Bso31I	GGTCTC	1 cut(s)	161
Bsp1407I	TGTACA	1 cut(s)	415
Bsp143I	GATC	1 cut(s)	475
BspACI	CCGC	1 cut(s)	804
BspCNI	CTCAG	2 cut(s)	256, 776
BspMAI	CTGCAG	1 cut(s)	670
BspMI	ACCTGC	1 cut(s)	797
BspOI	GCTAGC	1 cut(s)	465
BspPI	GGATC	1 cut(s)	470
BspTNI	GGTCTC	1 cut(s)	161
BsrDI	GCAATG	1 cut(s)	843
BsrGI	TGTACA	1 cut(s)	415
BsrI	ACTGG	5 cut(s)	171, 307, 379, 763, 823
BssECI	CCNNGG	2 cut(s)	33, 93
BssMI	GATC	1 cut(s)	475
Bst2UI	CCWGG	2 cut(s)	35, 95
Bst4CI	ACNGT	3 cut(s)	420, 430, 706
Bst6I	CTCTTC	1 cut(s)	720
BstAPI	GCANNNNNTGC	3 cut(s)	458, 536, 545
BstAUI	TGTACA	1 cut(s)	415
BstC8I	GCNNGC	2 cut(s)	463, 532
BstDEI	CTNAG	2 cut(s)	243, 763
BstF5I	GGATG	2 cut(s)	124, 683
BstKTI	GATC	1 cut(s)	478
BstMAI	GTCTC	2 cut(s)	161, 761
BstMBI	GATC	1 cut(s)	475
BstMWI	GCNNNNNNNGC	5 cut(s)	458, 536, 545, 599, 674
BstNI	CCWGG	2 cut(s)	35, 95
BstNSI	RCATGY	4 cut(s)	253, 511, 534, 570
BstSCI	CCNGG	2 cut(s)	33, 93
BstSFI	CTRYAG	1 cut(s)	666
BstV2I	GAAGAC	1 cut(s)	152
BstXI	CCANNNNNNTGG	1 cut(s)	386
BtsCI	GGATG	2 cut(s)	124, 683
BtsI	GCAGTG	1 cut(s)	534
BtsIMutI	CAGTG	4 cut(s)	425, 534, 784, 816
BveI	ACCTGC	1 cut(s)	797
Cac8I	GCNNGC	2 cut(s)	463, 532
CaiI	CAGNNNCTG	2 cut(s)	410, 458
Cfr13I	GGNCC	1 cut(s)	26
Csp6I	GTAC	6 cut(s)	218, 416, 426, 505, 585, 785
CviAII	CATG	7 cut(s)	250, 495, 508, 531, 567, 688, 795
CviJI	RGCY	8 cut(s)	83, 101, 188, 465, 482, 593, 749, 762
CviKI_1	RGCY	8 cut(s)	83, 101, 188, 465, 482, 593, 749, 762
CviQI	GTAC	6 cut(s)	218, 416, 426, 505, 585, 785
DdeI	CTNAG	2 cut(s)	243, 763
DpnI	GATC	1 cut(s)	477
DpnII	GATC	1 cut(s)	475
Eam1104I	CTCTTC	1 cut(s)	720
EarI	CTCTTC	1 cut(s)	720
Eco31I	GGTCTC	1 cut(s)	161
Eco32I	GATATC	1 cut(s)	775
Eco47I	GGWCC	1 cut(s)	26
EcoRII	CCWGG	2 cut(s)	33, 93
EcoRV	GATATC	1 cut(s)	775
EcoT22I	ATGCAT	2 cut(s)	6, 796
FaeI	CATG	7 cut(s)	253, 498, 511, 534, 570, 691, 798
FaqI	GGGAC	3 cut(s)	42, 440, 676
FatI	CATG	7 cut(s)	249, 494, 507, 530, 566, 687, 794
FauNDI	CATATG	1 cut(s)	214
FokI	GGATG	2 cut(s)	131, 670
FspBI	CTAG	4 cut(s)	344, 435, 462, 714
HapII	CCGG	1 cut(s)	479
Hin1II	CATG	7 cut(s)	253, 498, 511, 534, 570, 691, 798
HindIII	AAGCTT	1 cut(s)	591
HinfI	GANTC	5 cut(s)	209, 340, 560, 710, 737
HpaII	CCGG	1 cut(s)	479
HphI	GGTGA	1 cut(s)	98
Hpy166II	GTNNAC	1 cut(s)	416
Hpy188I	TCNGA	5 cut(s)	184, 274, 475, 742, 766
Hpy188III	TCNNGA	5 cut(s)	59, 245, 344, 629, 649
Hpy8I	GTNNAC	1 cut(s)	416
HpyAV	CCTTC	3 cut(s)	269, 386, 480
HpyCH4III	ACNGT	3 cut(s)	420, 430, 706
HpyF10VI	GCNNNNNNNGC	5 cut(s)	458, 536, 545, 599, 674
HpyF3I	CTNAG	2 cut(s)	243, 763
Hsp92II	CATG	7 cut(s)	253, 498, 511, 534, 570, 691, 798
Kzo9I	GATC	1 cut(s)	475
LmnI	GCTCC	1 cut(s)	835
LweI	GCATC	2 cut(s)	109, 229
MaeI	CTAG	4 cut(s)	344, 435, 462, 714
MalI	GATC	1 cut(s)	477
MboI	GATC	1 cut(s)	475
MboII	GAAGA	6 cut(s)	74, 157, 296, 349, 644, 737
MluCI	AATT	4 cut(s)	295, 359, 373, 642
MmeI	TCCRAC	2 cut(s)	53, 537
MnlI	CCTC	3 cut(s)	73, 91, 316
Mph1103I	ATGCAT	2 cut(s)	6, 796
MseI	TTAA	1 cut(s)	865
MspI	CCGG	1 cut(s)	479
MspR9I	CCNGG	2 cut(s)	35, 95
Mva1269I	GAATGC	1 cut(s)	796
MvaI	CCWGG	2 cut(s)	35, 95
MwoI	GCNNNNNNNGC	5 cut(s)	458, 536, 545, 599, 674
NdeI	CATATG	1 cut(s)	214
NdeII	GATC	1 cut(s)	475
NheI	GCTAGC	1 cut(s)	461
NlaIII	CATG	7 cut(s)	253, 498, 511, 534, 570, 691, 798
NsiI	ATGCAT	2 cut(s)	6, 796
NspI	RCATGY	4 cut(s)	253, 511, 534, 570
PaeI	GCATGC	1 cut(s)	534
PciI	ACATGT	2 cut(s)	507, 566
PctI	GAATGC	1 cut(s)	796
PfeI	GAWTC	5 cut(s)	209, 340, 560, 710, 737
PscI	ACATGT	2 cut(s)	507, 566
Psp6I	CCWGG	2 cut(s)	33, 93
PspGI	CCWGG	2 cut(s)	33, 93
PspPI	GGNCC	1 cut(s)	26
PstI	CTGCAG	1 cut(s)	670
PstNI	CAGNNNCTG	2 cut(s)	410, 458
RsaI	GTAC	6 cut(s)	219, 417, 427, 506, 586, 786
RsaNI	GTAC	6 cut(s)	218, 416, 426, 505, 585, 785
SaqAI	TTAA	1 cut(s)	865
Sau3AI	GATC	1 cut(s)	475
Sau96I	GGNCC	1 cut(s)	26
ScrFI	CCNGG	2 cut(s)	35, 95
SfaNI	GCATC	2 cut(s)	109, 229
SfcI	CTRYAG	1 cut(s)	666
SinI	GGWCC	1 cut(s)	26
SmlI	CTYRAG	1 cut(s)	21
SmoI	CTYRAG	1 cut(s)	21
SphI	GCATGC	1 cut(s)	534
Sse9I	AATT	4 cut(s)	295, 359, 373, 642
SsiI	CCGC	1 cut(s)	804
SspI	AATATT	1 cut(s)	700
SspMI	CTAG	4 cut(s)	344, 435, 462, 714
StyD4I	CCNGG	2 cut(s)	33, 93
TaaI	ACNGT	3 cut(s)	420, 430, 706
TaqI	TCGA	1 cut(s)	563
TasI	AATT	4 cut(s)	295, 359, 373, 642
TatI	WGTACW	1 cut(s)	415
TfiI	GAWTC	5 cut(s)	209, 340, 560, 710, 737
Tru1I	TTAA	1 cut(s)	865
Tru9I	TTAA	1 cut(s)	865
TscAI	CASTG	4 cut(s)	425, 541, 784, 823
TspDTI	ATGAA	7 cut(s)	201, 255, 344, 456, 483, 704, 750
TspGWI	ACGGA	3 cut(s)	504, 543, 602
TspRI	CASTG	4 cut(s)	425, 541, 784, 823
VpaK11BI	GGWCC	1 cut(s)	26
XapI	RAATTY	1 cut(s)	295
XbaI	TCTAGA	1 cut(s)	343
XceI	RCATGY	4 cut(s)	253, 511, 534, 570
XspI	CTAG	4 cut(s)	344, 435, 462, 714
Zsp2I	ATGCAT	2 cut(s)	6, 796

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.