Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0017926.1

Orthogroup ID

OG0009689

Physical Location & Seq

Genomic Coordinates Reverse (-)

82 .. 669

Gene Structure 588 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0017926.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

atggaaatgggagagaccagtaatctttcagaagctaaagaaaatcattgtttagattcatatgtacctgacccctattcacaagatgctcaggacgtgcaaaacaactattcatattcagaaggtggagaagattatacaaagttactcaaccagtattatgagattgaggagaaaagacagaagattctagagaaacttcatcaatttggtggtgggaattaccagtattctggcgaaggttcaggttcaggttctggtgtacagtggggtactgtttctagttacgaacaaaatgcagtccctgctagccaaccttgtgatccggctgttgtgggttcatgttgcccgtacatgtgtccgtgcttgatgactgcatgcactgcatttcctgcttgtccgttggattcgacatgtgctggtataacttgtacggaagcttgtttggcaacaagtaatgggaaaccattatctcttgaagatagaaaaattgtcaagacagcatttgggactgcagaaagagcattatcatccatcaaaacaaatattactgttgattctagtataagtgaaggtaggaattcctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SMN

Protein Analysis

195

Amino Acids

20.97

Weight (kDa)

4.49

Isoelectric Point (pI)

54.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009689)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g23080 FvH4_5g23080 FvH4_5g23080 FvH4_5g23080 FvH4_5g23080 FvH4_5g23080
malus_domestica	MD06G1026300.v1.1
prunus_persica	Prupe.5G028100_v2.0.a1 Prupe.5G028100_v2.0.a1
pyrus_communis	pycom06g02150
rosa_chinensis	RchiOBHm_Chr7g0211801
rosa_laevigata	RLG00000002968
rosa_multiflora	Rmu_sc0009005.1_g000014 Rmu_sc0017926.1_g000001
rosa_roxburghii	Rroxscaffold_3G00247420
rosa_rugosa	Rorug07G0128800 Rorug07G0128800
rosa_samantha	Rh7AG261500 Rh7BG255100 Rh7CG278100 Rh7DG268100
rosa_wichuraiana	Rw7G022300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	317
AcsI	RAATTY	1 cut(s)	580
AfaI	GTAC	5 cut(s)	66, 264, 274, 353, 433
AflIII	ACRYGT	2 cut(s)	354, 413
AgsI	TTSAA	1 cut(s)	479
AjiI	CACGTC	1 cut(s)	97
AluBI	AGCT	2 cut(s)	35, 440
AluI	AGCT	2 cut(s)	35, 440
Alw26I	GTCTC	1 cut(s)	8
AlwI	GGATC	1 cut(s)	317
AlwNI	CAGNNNCTG	2 cut(s)	257, 305
ApoI	RAATTY	1 cut(s)	580
AsuNHI	GCTAGC	1 cut(s)	308
BccI	CCATC	1 cut(s)	542
BcgI	CGANNNNNNTGC	2 cut(s)	278, 312
BcoDI	GTCTC	1 cut(s)	8
BfaI	CTAG	4 cut(s)	191, 282, 309, 561
BfmI	CTRYAG	1 cut(s)	513
BmgBI	CACGTC	1 cut(s)	97
BmsI	GCATC	1 cut(s)	76
BmtI	GCTAGC	1 cut(s)	312
Bpu10I	CCTNAGC	1 cut(s)	90
BsaI	GGTCTC	1 cut(s)	8
Bse1I	ACTGG	3 cut(s)	18, 154, 226
BseGI	GGATG	1 cut(s)	530
BseMII	CTCAG	1 cut(s)	104
BseNI	ACTGG	3 cut(s)	18, 154, 226
BseRI	GAGGAG	1 cut(s)	185
BsiSI	CCGG	1 cut(s)	326
BslFI	GGGAC	2 cut(s)	287, 523
BsmAI	GTCTC	1 cut(s)	8
BsmFI	GGGAC	2 cut(s)	287, 523
Bso31I	GGTCTC	1 cut(s)	8
Bsp1407I	TGTACA	1 cut(s)	262
Bsp143I	GATC	1 cut(s)	322
BspCNI	CTCAG	1 cut(s)	103
BspMAI	CTGCAG	1 cut(s)	517
BspOI	GCTAGC	1 cut(s)	312
BspPI	GGATC	1 cut(s)	317
BspTNI	GGTCTC	1 cut(s)	8
BsrGI	TGTACA	1 cut(s)	262
BsrI	ACTGG	3 cut(s)	18, 154, 226
BssMI	GATC	1 cut(s)	322
Bst4CI	ACNGT	3 cut(s)	267, 277, 553
BstAPI	GCANNNNNTGC	3 cut(s)	305, 383, 392
BstAUI	TGTACA	1 cut(s)	262
BstC8I	GCNNGC	2 cut(s)	310, 379
BstDEI	CTNAG	1 cut(s)	90
BstF5I	GGATG	1 cut(s)	530
BstKTI	GATC	1 cut(s)	325
BstMAI	GTCTC	1 cut(s)	8
BstMBI	GATC	1 cut(s)	322
BstMWI	GCNNNNNNNGC	5 cut(s)	305, 383, 392, 446, 521
BstNSI	RCATGY	3 cut(s)	358, 381, 417
BstSFI	CTRYAG	1 cut(s)	513
BstXI	CCANNNNNNTGG	1 cut(s)	233
BtrI	CACGTC	1 cut(s)	97
BtsCI	GGATG	1 cut(s)	530
BtsI	GCAGTG	1 cut(s)	381
BtsIMutI	CAGTG	2 cut(s)	272, 381
Cac8I	GCNNGC	2 cut(s)	310, 379
CaiI	CAGNNNCTG	2 cut(s)	257, 305
Csp6I	GTAC	5 cut(s)	65, 263, 273, 352, 432
CviAII	CATG	4 cut(s)	342, 355, 378, 414
CviJI	RGCY	4 cut(s)	35, 312, 329, 440
CviKI_1	RGCY	4 cut(s)	35, 312, 329, 440
CviQI	GTAC	5 cut(s)	65, 263, 273, 352, 432
DdeI	CTNAG	1 cut(s)	90
DpnI	GATC	1 cut(s)	324
DpnII	GATC	1 cut(s)	322
Eco31I	GGTCTC	1 cut(s)	8
EcoRI	GAATTC	1 cut(s)	580
FaeI	CATG	4 cut(s)	345, 358, 381, 417
FaqI	GGGAC	2 cut(s)	287, 523
FatI	CATG	4 cut(s)	341, 354, 377, 413
FauNDI	CATATG	1 cut(s)	61
FokI	GGATG	1 cut(s)	517
FspBI	CTAG	4 cut(s)	191, 282, 309, 561
HapII	CCGG	1 cut(s)	326
Hin1II	CATG	4 cut(s)	345, 358, 381, 417
HindIII	AAGCTT	1 cut(s)	438
HinfI	GANTC	4 cut(s)	56, 187, 407, 557
HpaII	CCGG	1 cut(s)	326
Hpy166II	GTNNAC	1 cut(s)	263
Hpy188I	TCNGA	2 cut(s)	31, 121
Hpy188III	TCNNGA	4 cut(s)	92, 191, 476, 496
Hpy8I	GTNNAC	1 cut(s)	263
HpyAV	CCTTC	3 cut(s)	116, 233, 566
HpyCH4III	ACNGT	3 cut(s)	267, 277, 553
HpyCH4IV	ACGT	1 cut(s)	96
HpyCH4V	TGCA	6 cut(s)	100, 299, 377, 381, 386, 515
HpyF10VI	GCNNNNNNNGC	5 cut(s)	305, 383, 392, 446, 521
HpyF3I	CTNAG	1 cut(s)	90
HpySE526I	ACGT	1 cut(s)	96
Hsp92II	CATG	4 cut(s)	345, 358, 381, 417
Kzo9I	GATC	1 cut(s)	322
LweI	GCATC	1 cut(s)	76
MaeI	CTAG	4 cut(s)	191, 282, 309, 561
MaeII	ACGT	1 cut(s)	96
MaeIII	GTNAC	2 cut(s)	144, 284
MalI	GATC	1 cut(s)	324
MboI	GATC	1 cut(s)	322
MboII	GAAGA	3 cut(s)	143, 196, 491
MluCI	AATT	4 cut(s)	206, 220, 489, 580
MmeI	TCCRAC	1 cut(s)	384
MnlI	CCTC	1 cut(s)	163
MspI	CCGG	1 cut(s)	326
MwoI	GCNNNNNNNGC	5 cut(s)	305, 383, 392, 446, 521
NdeI	CATATG	1 cut(s)	61
NdeII	GATC	1 cut(s)	322
NheI	GCTAGC	1 cut(s)	308
NlaIII	CATG	4 cut(s)	345, 358, 381, 417
NspI	RCATGY	3 cut(s)	358, 381, 417
PaeI	GCATGC	1 cut(s)	381
PciI	ACATGT	2 cut(s)	354, 413
PfeI	GAWTC	4 cut(s)	56, 187, 407, 557
PscI	ACATGT	2 cut(s)	354, 413
PstI	CTGCAG	1 cut(s)	517
PstNI	CAGNNNCTG	2 cut(s)	257, 305
RsaI	GTAC	5 cut(s)	66, 264, 274, 353, 433
RsaNI	GTAC	5 cut(s)	65, 263, 273, 352, 432
Sau3AI	GATC	1 cut(s)	322
SfaNI	GCATC	1 cut(s)	76
SfcI	CTRYAG	1 cut(s)	513
SphI	GCATGC	1 cut(s)	381
Sse9I	AATT	4 cut(s)	206, 220, 489, 580
SspI	AATATT	1 cut(s)	547
SspMI	CTAG	4 cut(s)	191, 282, 309, 561
TaaI	ACNGT	3 cut(s)	267, 277, 553
TaiI	ACGT	1 cut(s)	99
TaqI	TCGA	1 cut(s)	410
TasI	AATT	4 cut(s)	206, 220, 489, 580
TatI	WGTACW	1 cut(s)	262
TfiI	GAWTC	4 cut(s)	56, 187, 407, 557
TscAI	CASTG	2 cut(s)	272, 388
TspDTI	ATGAA	4 cut(s)	48, 102, 191, 330
TspGWI	ACGGA	3 cut(s)	351, 390, 449
TspRI	CASTG	2 cut(s)	272, 388
XapI	RAATTY	1 cut(s)	580
XbaI	TCTAGA	1 cut(s)	190
XceI	RCATGY	3 cut(s)	358, 381, 417
XspI	CTAG	4 cut(s)	191, 282, 309, 561

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.