Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0009689

Physical Location & Seq

Genomic Coordinates Forward (+)

10168910 .. 10179401

Gene Structure 10492 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0128800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3216 bp

ATGATTGTCTACTTAGAATTTCGAAACATTGATCTAAAATGTAGCTTTTCGATTTTTCGTTTGTCCATTTTAAAGAGAGATTGGATAGGGGCTTTTCCTTTTTTTTTCTTTGAAAGTGAAAAACATCTCCCCGGACAAATCCCAACACTGAGTTGGGGTTCTAATGCACGCGCTCCCTCTGCGAGTGAGGACTCCCACGGCCACACCCGGCGCGCCAAGAGAGACCCAACCCGATCACAAACACAACCATCGCTGACTTCCCCCAATCCTTACACAACACAGGACGACCATATCTCTTCTCGTACTCACTCCTCACCACCACCGCAATTATCAAGCTTCAAACTTTTAAGTTTGAATCTTTGTATAGCTTTCTGGGTCCATTATTATGTGCTTGCTGTAGTCATTCGCCGTTTACCAAAAGGTAATAGGGCGAGGAAAAGAAACTGTTGTGAGGTGGGTGGTGTGTTGGGAGGTTTTGGAGTAATGGCTGGTCTAACTCAGCACCCAATTCTTGGAACTAACGATACTATAAAGGAGGAGAAGCAAGAATTTGACCAAACAAAGCCTTTGTCTCTAGATAAAGTTGAGGGTCAAACTGAGAAAGACATGGCTCCGGTCACCGGAAGTTCGATTCACCGGTCGGGCTCTCGGCCTCAGTTGGACCTCAGCAAAGCTGCTATTCAGGGAACTTTTGAAGAGAGGGACCCTACAATTCTGTTGCCTAATCAGTCTGATCACTTGTCTCATCTGGCTTTGGACATTGGAGGATCTCTCATCAAGTTGGTGTATTTTTCTAGACACGAAGACCAATCAATTGATGACAAAAGGAAGAAAACTTTGAAGGATAGACTGGGAATTTCCAATGGTAGTCGAAGAAGCTACCCTGTTCTTGGTGGAAGGCTTCATTTTGTGAAGTTTGAGACGACCAAGATTAATGAGTGCTTAGACTTCATTTATTCTAAACAACTTCACCGTGGAGGGATGGATGTTCGTATTTGGAATCCTGATGCCCCAACCAATGAAAATGCTGTAATTAAGGCAACAGGTGGTGGAGCTTACAAGTTTGCAGACCTTTTTAAGGAAAGGCTTGGGGTTGGTCTTGACAAAGAAGATGAAATGAATTGTCTTGTAGCTGGAGCAAATTTTTTACTCAAGGCAATTCGACATGAAGCTTTCACACATATGGAGGGCCAGAAAGAGTTTGTGCAAATTGACCAGAACGAATTATATCCCTATCTTCTTGTTAATATTGGGTCCGGTGTTAGTATGATTAAGGTTGATGGAGAAGGAAAATTTCAGCGAGTAAGTGGAACAAATGTAGGTGGTGGTACCTATTGGGGCTTAGGAAGGCTGTTAACAAAATGCAAAAGTTTTGACGAGTTGTTAGAGCTTAGTCAAAGGGGAGATAATAGGACTATAGACATGCTTGTAGGGGACATTTATGGCGGTATGGATTACTCAAAGATTGGTCTTTCAGCTTCAACCATTGCTTCTAGTTTTGGAAAGACTATTTCAGAAAACAAGGAGCTTGAGGACTACAGACCTGAAGATATATCCCTTTCTCTCTTACGAATGATTTCTTACAATATTGGCCAGATATCTTATTTAAATGCACTACGATTCGGTCTCAAACGGATATTTTTTGGAGGGTTTTTTATTAGAGGCCATGCTTATACCATGGACACCATCTCCTTTGCAGTTCAGTTCTGGTCGAAAGGAGAGGCACAGGCAATGTTTTTGAGACATGAAGGGTTTCTGGGAGCGTTAGGTGCATTTATGAGCTATGAAAAACATGGCCTTGATGACTTGATGGTCCATCACTTAGTTGAAAGGTTTCCCATGGGCGCACCATATACAGGAGGAAAGATTCATGGTCCACCACTTGGGGATTTGAATGAGAAGATTTCATGGATGGAGAAGTTTGTTCGGAAGGGGACTGAGATCACCGCTCCAGTGCCAATGGATCCACCTGGAACTACTGGACTTGGAGGCTTTGAAGTTCCATCATCCAAAGGAGGTACCCTGCGCTCTGATGCAAGTGCTTTAAACATTGGGGTTCTCCATCTGGTACCCACTTTGGAAGTATTTCCATTATTGGTGGATCCCAAAACGTATGAGCCTAACACTATTGATCTCTCTGATCACAGTGAATTAGAGTATTGGTTCACTGTTATGTCCGGGCATCTGCCAGACCTTGTTGATAAGGCAGTGGCAAGTGAAGGTGGGACAGAAGATGCTAAAAGAAGGGGTGATGCCTTTGCTCGAGCTTTTTCTGCTCACTTGGCACGGTTGATGGAGGAGCCTGCTGCATATGGAAAGTTAGGGTTGGCCAATCTACTGGAACTCAGAGAAGAATGCTTAAGGGAGTTCCAATTTGTTGATTGTTATAGAAGTATAAAACAAAGAGAAAATGAGGCGTCGCTTGCTGTTTTACCTGACCTGCTCATGGAACTTGATAGTATGAGTGAGGAAACAAGAATGCTTTCCCTTATTGAAGGTGTTCTTGCTGCGAACATTTTTGACTGGGGGTCACGTGCCTGTGTGGATCTCTATCACAAAGGAACAATTATTGAAATTTACAGAATGAGTCGTGATAAAATGCAGAGACCTTGGCGGGTGGATGATTTTGATGTCTTTCAAAAGAGAATGTTTGGATCTGGAGACAAGAAACCTCGCCCACATAAAAGAGCTTTGCTCTTTGTCGATAACTCAGGTGCTGACGTTGTTCTAGGAATGCTTCCCCTGGCACGGGAACTTCTCCGTCGTGGAACAGAGGTTGTTTTGGTTGCCAACTCCCTTCCAGCTTTAAATGATGTTACTGCCATGGAGCTTCCTGAGATCGTTGCTGAAGCTGCCAAGCATTGTGACATACTTCGGAGAGCTGCTGAAGCGGGAGGCTTGCTCGTGGATGCGATGGTCAGCAACCTAGATGGTTCTAAAGGCAATTCATCATCGGTTCCATTAATGGTTGTTGAGAACGGTTGTGGCAGTCCTTGCATAGACTTGAGGCAGGTCAGCTCTGAGCTAGCAGCTGCTGCAAAAGAGGCTGATTTGATTATCTTGGAAGGCATGGGTAGAGCTCTTCATACCAACTTCAATGCCAGGTTTAAATGTGATGCTTTGAAGCTTGCAATGGTGAAAAATCAAAGGTTGGCAGAGAAGTTGATTAAAGGAAACATATACGACTGTGTTTGCAGATATGAACCAGCAAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SMN

Protein Analysis

1071

Amino Acids

118.96

Weight (kDa)

6.52

Isoelectric Point (pI)

40.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Fumble	PF03630	249 - 593	4.1e-137	Fumble
ARMT1-like_dom	PF01937	748 - 1055	1.3e-44	Damage-control phosphatase ARMT1-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009689)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g23080 FvH4_5g23080 FvH4_5g23080 FvH4_5g23080 FvH4_5g23080 FvH4_5g23080
malus_domestica	MD06G1026300.v1.1
prunus_persica	Prupe.5G028100_v2.0.a1 Prupe.5G028100_v2.0.a1
pyrus_communis	pycom06g02150
rosa_chinensis	RchiOBHm_Chr7g0211801
rosa_laevigata	RLG00000002968
rosa_multiflora	Rmu_sc0009005.1_g000014 Rmu_sc0017926.1_g000001
rosa_roxburghii	Rroxscaffold_3G00247420
rosa_rugosa	Rorug07G0128800 Rorug07G0128800
rosa_samantha	Rh7AG261500 Rh7BG255100 Rh7CG278100 Rh7DG268100
rosa_wichuraiana	Rw7G022300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1811
Acc36I	ACCTGC	2 cut(s)	2448, 3001
Acc65I	GGTACC	3 cut(s)	1328, 2018, 2068
AccB1I	GGYRCC	3 cut(s)	1328, 2018, 2068
AccB7I	CCANNNNNTGG	2 cut(s)	512, 1883
AccBSI	CCGCTC	1 cut(s)	1949
AccI	GTMKAC	1 cut(s)	9
AccII	CGCG	2 cut(s)	171, 213
AciI	CCGC	5 cut(s)	323, 1446, 1947, 2614, 2891
AclWI	GGATC	7 cut(s)	775, 1958, 1971, 2096, 2109, 2553, 2662
AcoI	YGGCCR	3 cut(s)	199, 1591, 2328
AcsI	RAATTY	6 cut(s)	17, 548, 855, 1141, 1292, 2574
AcuI	CTGAAG	3 cut(s)	1566, 2868, 2907
AcvI	CACGTG	1 cut(s)	2534
AcyI	GRCGYC	1 cut(s)	2417
AfaI	GTAC	4 cut(s)	304, 1330, 2020, 2070
AfiI	CCNNNNNNNGG	9 cut(s)	512, 620, 890, 1078, 1856, 1883, 2446, 2748, 2749
AflII	CTTAAG	1 cut(s)	2359
AgeI	ACCGGT	1 cut(s)	636
AhdI	GACNNNNNGTC	1 cut(s)	2527
AjnI	CCWGG	3 cut(s)	1969, 2742, 3101
Alw21I	GWGCWC	1 cut(s)	3082
Alw26I	GTCTC	8 cut(s)	216, 576, 747, 914, 1631, 1735, 2599, 2655
AlwI	GGATC	7 cut(s)	775, 1958, 1971, 2096, 2109, 2553, 2662
AlwNI	CAGNNNCTG	2 cut(s)	2717, 3035
Ama87I	CYCGRG	1 cut(s)	2262
AoxI	GGCC	7 cut(s)	199, 650, 1189, 1591, 1663, 1795, 2328
ApeKI	GCWGC	8 cut(s)	674, 2306, 2507, 2852, 2882, 3029, 3032, 3035
ApoI	RAATTY	6 cut(s)	17, 548, 855, 1141, 1292, 2574
ArsI	GACNNNNNNTTYG	2 cut(s)	554, 586
AscI	GGCGCGCC	1 cut(s)	211
AseI	ATTAAT	2 cut(s)	933, 2963
AsiGI	ACCGGT	1 cut(s)	636
Asp700I	GAANNNNTTC	6 cut(s)	1576, 1752, 1833, 2085, 2482, 2499
Asp718I	GGTACC	3 cut(s)	1328, 2018, 2068
AspLEI	GCGC	5 cut(s)	173, 213, 215, 1847, 2028
AspS9I	GGNCC	7 cut(s)	376, 661, 703, 1189, 1254, 1813, 1874
AsuC2I	CCSGG	3 cut(s)	132, 208, 2179
AsuHPI	GGTGA	7 cut(s)	306, 610, 626, 962, 1936, 2261, 3148
AsuII	TTCGAA	1 cut(s)	22
AsuNHI	GCTAGC	1 cut(s)	3025
AvaI	CYCGRG	1 cut(s)	2262
AvaII	GGWCC	6 cut(s)	376, 661, 703, 1254, 1813, 1874
BalI	TGGCCA	2 cut(s)	1593, 2330
BamHI	GGATCC	2 cut(s)	1963, 2101
BanI	GGYRCC	3 cut(s)	1328, 2018, 2068
BanII	GRGCYC	2 cut(s)	647, 3082
BauI	CACGAG	1 cut(s)	2903
BbrPI	CACGTG	1 cut(s)	2534
BbsI	GAAGAC	1 cut(s)	810
Bbv12I	GWGCWC	1 cut(s)	3082
BbvCI	CCTCAGC	1 cut(s)	665
BbvI	GCAGC	8 cut(s)	661, 2293, 2494, 2839, 2869, 3019, 3022, 3041
BceAI	ACGGC	2 cut(s)	214, 393
BciT130I	CCWGG	3 cut(s)	1971, 2744, 3103
BclI	TGATCA	2 cut(s)	733, 2140
BcnI	CCSGG	3 cut(s)	132, 208, 2179
BcoDI	GTCTC	8 cut(s)	216, 576, 747, 914, 1631, 1735, 2599, 2655
BfaI	CTAG	6 cut(s)	575, 795, 1494, 2729, 2927, 3026
BfmI	CTRYAG	3 cut(s)	396, 1416, 1537
BfrI	CTTAAG	1 cut(s)	2359
BfuAI	ACCTGC	2 cut(s)	2448, 3001
BisI	GCNGC	8 cut(s)	675, 2307, 2508, 2853, 2883, 3030, 3033, 3036
BlsI	GCNGC	8 cut(s)	676, 2308, 2509, 2854, 2884, 3031, 3034, 3037
Bme1390I	CCNGG	6 cut(s)	132, 208, 1971, 2179, 2744, 3103
Bme18I	GGWCC	6 cut(s)	376, 661, 703, 1254, 1813, 1874
BmeRI	GACNNNNNGTC	1 cut(s)	2527
BmeT110I	CYCGRG	1 cut(s)	2262
BmgT120I	GGNCC	7 cut(s)	376, 661, 703, 1189, 1254, 1813, 1874
BmrFI	CCNGG	6 cut(s)	132, 208, 1971, 2179, 2744, 3103
BmrI	ACTGGG	2 cut(s)	860, 2533
BmsI	GCATC	7 cut(s)	997, 2023, 2191, 2224, 2242, 2899, 3106
BmtI	GCTAGC	1 cut(s)	3029
BmuI	ACTGGG	2 cut(s)	860, 2533
BpiI	GAAGAC	1 cut(s)	810
BplI	GAGNNNNNCTC	6 cut(s)	756, 788, 2679, 2711, 2886, 2918
BpmI	CTGGAG	3 cut(s)	1155, 1935, 2679
Bpu10I	CCTNAGC	2 cut(s)	665, 1342
Bpu14I	TTCGAA	1 cut(s)	22
BpuEI	CTTGAG	3 cut(s)	1136, 1550, 3025
BpuMI	CCSGG	3 cut(s)	132, 208, 2179
BsaAI	YACGTR	1 cut(s)	2534
BsaBI	GATNNNNATC	1 cut(s)	2550
BsaHI	GRCGYC	1 cut(s)	2417
BsaI	GGTCTC	3 cut(s)	216, 1631, 2599
BsaJI	CCNNGG	8 cut(s)	130, 196, 973, 1677, 1839, 2609, 2742, 2823
BsaWI	WCCGGW	4 cut(s)	613, 620, 636, 1256
BsaXI	ACNNNNNCTCC	2 cut(s)	1673, 1703
Bsc4I	CCNNNNNNNGG	9 cut(s)	512, 620, 890, 1078, 1856, 1883, 2446, 2748, 2749
Bse118I	RCCGGY	1 cut(s)	636
Bse1I	ACTGG	5 cut(s)	855, 1952, 1984, 2343, 2528
Bse3DI	GCAATG	3 cut(s)	1485, 1737, 3138
Bse8I	GATNNNNATC	1 cut(s)	2550
BseBI	CCWGG	3 cut(s)	1971, 2744, 3103
BseDI	CCNNGG	8 cut(s)	130, 196, 973, 1677, 1839, 2609, 2742, 2823
BseGI	GGATG	6 cut(s)	987, 991, 1917, 2006, 2626, 2914
BseJI	GATNNNNATC	1 cut(s)	2550
BseLI	CCNNNNNNNGG	9 cut(s)	512, 620, 890, 1078, 1856, 1883, 2446, 2748, 2749
BseMI	GCAATG	3 cut(s)	1485, 1737, 3138
BseNI	ACTGG	5 cut(s)	855, 1952, 1984, 2343, 2528
BsePI	GCGCGC	1 cut(s)	211
BseRI	GAGGAG	3 cut(s)	301, 551, 2312
BseXI	GCAGC	8 cut(s)	661, 2293, 2494, 2839, 2869, 3019, 3022, 3041
Bsh1236I	CGCG	2 cut(s)	171, 213
Bsh1285I	CGRYCG	1 cut(s)	641
BshFI	GGCC	7 cut(s)	201, 652, 1191, 1593, 1665, 1797, 2330
BshNI	GGYRCC	3 cut(s)	1328, 2018, 2068
BshTI	ACCGGT	1 cut(s)	636
BsiEI	CGRYCG	1 cut(s)	641
BsiHKAI	GWGCWC	1 cut(s)	3082
BsiHKCI	CYCGRG	1 cut(s)	2262
BsiSI	CCGG	7 cut(s)	132, 208, 614, 621, 637, 1257, 2178
BslFI	GGGAC	4 cut(s)	716, 1448, 1948, 2239
BslI	CCNNNNNNNGG	9 cut(s)	512, 620, 890, 1078, 1856, 1883, 2446, 2748, 2749
BsmAI	GTCTC	8 cut(s)	216, 576, 747, 914, 1631, 1735, 2599, 2655
BsmBI	CGTCTC	1 cut(s)	914
BsmFI	GGGAC	4 cut(s)	716, 1448, 1948, 2239
BsmI	GAATGC	3 cut(s)	2360, 2484, 2739
BsnI	GGCC	7 cut(s)	201, 652, 1191, 1593, 1665, 1797, 2330
Bso31I	GGTCTC	3 cut(s)	216, 1631, 2599
BsoBI	CYCGRG	1 cut(s)	2262
Bsp119I	TTCGAA	1 cut(s)	22
Bsp1286I	GDGCHC	2 cut(s)	647, 3082
Bsp19I	CCATGG	3 cut(s)	1677, 1839, 2823
BspACI	CCGC	5 cut(s)	323, 1446, 1947, 2614, 2891
BspANI	GGCC	7 cut(s)	201, 652, 1191, 1593, 1665, 1797, 2330
BspFNI	CGCG	2 cut(s)	171, 213
BspMI	ACCTGC	2 cut(s)	2448, 3001
BspOI	GCTAGC	1 cut(s)	3029
BspPI	GGATC	7 cut(s)	775, 1958, 1971, 2096, 2109, 2553, 2662
BspQI	GCTCTTC	1 cut(s)	3087
BspT104I	TTCGAA	1 cut(s)	22
BspT107I	GGYRCC	3 cut(s)	1328, 2018, 2068
BspTI	CTTAAG	1 cut(s)	2359
BspTNI	GGTCTC	3 cut(s)	216, 1631, 2599
BsrBI	CCGCTC	1 cut(s)	1949
BsrDI	GCAATG	3 cut(s)	1485, 1737, 3138
BsrFI	RCCGGY	1 cut(s)	636
BsrI	ACTGG	5 cut(s)	855, 1952, 1984, 2343, 2528
BssAI	RCCGGY	1 cut(s)	636
BssECI	CCNNGG	8 cut(s)	130, 196, 973, 1677, 1839, 2609, 2742, 2823
BssHII	GCGCGC	1 cut(s)	211
BssNI	GRCGYC	1 cut(s)	2417
BssSI	CACGAG	1 cut(s)	2903
BssT1I	CCWWGG	4 cut(s)	1677, 1839, 2609, 2823
Bst2BI	CACGAG	1 cut(s)	2903
Bst2UI	CCWGG	3 cut(s)	1971, 2744, 3103
Bst4CI	ACNGT	7 cut(s)	446, 974, 2147, 2170, 2289, 2981, 3188
Bst6I	CTCTTC	3 cut(s)	301, 690, 3087
BstACI	GRCGYC	1 cut(s)	2417
BstAFI	CTTAAG	1 cut(s)	2359
BstAPI	GCANNNNNTGC	2 cut(s)	2994, 3035
BstBAI	YACGTR	1 cut(s)	2534
BstBI	TTCGAA	1 cut(s)	22
BstC8I	GCNNGC	8 cut(s)	169, 213, 393, 2304, 2424, 2900, 3027, 3129
BstDSI	CCRYGG	5 cut(s)	196, 973, 1677, 1839, 2823
BstEII	GGTNACC	1 cut(s)	616
BstENI	CCTNNNNNAGG	1 cut(s)	1076
BstF5I	GGATG	6 cut(s)	987, 991, 1917, 2006, 2626, 2914
BstFNI	CGCG	2 cut(s)	171, 213
BstHHI	GCGC	5 cut(s)	173, 213, 215, 1847, 2028
BstMAI	GTCTC	8 cut(s)	216, 576, 747, 914, 1631, 1735, 2599, 2655
BstMCI	CGRYCG	1 cut(s)	641
BstNI	CCWGG	3 cut(s)	1971, 2744, 3103
BstNSI	RCATGY	1 cut(s)	1426
BstPI	GGTNACC	1 cut(s)	616
BstSCI	CCNGG	6 cut(s)	130, 206, 1969, 2177, 2742, 3101
BstSFI	CTRYAG	3 cut(s)	396, 1416, 1537
BstUI	CGCG	2 cut(s)	171, 213
BstV1I	GCAGC	8 cut(s)	661, 2293, 2494, 2839, 2869, 3019, 3022, 3041
BstV2I	GAAGAC	1 cut(s)	810
BstX2I	RGATCY	5 cut(s)	767, 1963, 2101, 2545, 2654
BstXI	CCANNNNNNTGG	1 cut(s)	2338
BstYI	RGATCY	5 cut(s)	767, 1963, 2101, 2545, 2654
BsuRI	GGCC	7 cut(s)	201, 652, 1191, 1593, 1665, 1797, 2330
BtgI	CCRYGG	5 cut(s)	196, 973, 1677, 1839, 2823
BtgZI	GCGATG	2 cut(s)	234, 2927
BtsCI	GGATG	6 cut(s)	987, 991, 1917, 2006, 2626, 2914
BtsI	GCAGTG	1 cut(s)	2214
BtsIMutI	CAGTG	5 cut(s)	146, 1959, 2152, 2166, 2214
BveI	ACCTGC	2 cut(s)	2448, 3001
Cac8I	GCNNGC	8 cut(s)	169, 213, 393, 2304, 2424, 2900, 3027, 3129
CaiI	CAGNNNCTG	2 cut(s)	2717, 3035
CfoI	GCGC	5 cut(s)	173, 213, 215, 1847, 2028
Cfr10I	RCCGGY	1 cut(s)	636
Cfr13I	GGNCC	7 cut(s)	376, 661, 703, 1189, 1254, 1813, 1874
CseI	GACGC	1 cut(s)	2406
Csp6I	GTAC	4 cut(s)	303, 1329, 2019, 2069
CspAI	ACCGGT	1 cut(s)	636
CviQI	GTAC	4 cut(s)	303, 1329, 2019, 2069
DraI	TTTAAA	5 cut(s)	72, 1608, 2046, 2808, 3109
DrdI	GACNNNNNNGTC	1 cut(s)	1811
DriI	GACNNNNNGTC	1 cut(s)	2527
DseDI	GACNNNNNNGTC	1 cut(s)	1811
EaeI	YGGCCR	3 cut(s)	199, 1591, 2328
Eam1104I	CTCTTC	3 cut(s)	301, 690, 3087
Eam1105I	GACNNNNNGTC	1 cut(s)	2527
EarI	CTCTTC	3 cut(s)	301, 690, 3087
Ecl136II	GAGCTC	1 cut(s)	3080
Eco130I	CCWWGG	4 cut(s)	1677, 1839, 2609, 2823
Eco24I	GRGCYC	2 cut(s)	647, 3082
Eco31I	GGTCTC	3 cut(s)	216, 1631, 2599
Eco32I	GATATC	1 cut(s)	1599
Eco47I	GGWCC	6 cut(s)	376, 661, 703, 1254, 1813, 1874
Eco53kI	GAGCTC	1 cut(s)	3080
Eco57I	CTGAAG	3 cut(s)	1566, 2868, 2907
Eco72I	CACGTG	1 cut(s)	2534
Eco88I	CYCGRG	1 cut(s)	2262
Eco91I	GGTNACC	1 cut(s)	616
EcoICRI	GAGCTC	1 cut(s)	3080
EcoNI	CCTNNNNNAGG	1 cut(s)	1076
EcoO109I	RGGNCCY	1 cut(s)	703
EcoO65I	GGTNACC	1 cut(s)	616
EcoRII	CCWGG	3 cut(s)	1969, 2742, 3101
EcoRV	GATATC	1 cut(s)	1599
EcoT14I	CCWWGG	4 cut(s)	1677, 1839, 2609, 2823
EcoT38I	GRGCYC	2 cut(s)	647, 3082
ErhI	CCWWGG	4 cut(s)	1677, 1839, 2609, 2823
Esp3I	CGTCTC	1 cut(s)	914
FalI	AAGNNNNNCTT	2 cut(s)	2487, 2519
FaqI	GGGAC	4 cut(s)	716, 1448, 1948, 2239
FauI	CCCGC	2 cut(s)	2607, 2884
FauNDI	CATATG	2 cut(s)	1182, 2311
FbaI	TGATCA	2 cut(s)	733, 2140
FblI	GTMKAC	1 cut(s)	9
Fnu4HI	GCNGC	8 cut(s)	675, 2307, 2508, 2853, 2883, 3030, 3033, 3036
FokI	GGATG	6 cut(s)	994, 998, 1924, 1993, 2633, 2921
FriOI	GRGCYC	2 cut(s)	647, 3082
Fsp4HI	GCNGC	8 cut(s)	675, 2307, 2508, 2853, 2883, 3030, 3033, 3036
FspBI	CTAG	6 cut(s)	575, 795, 1494, 2729, 2927, 3026
GlaI	GCGC	5 cut(s)	172, 212, 214, 1846, 2027
GluI	GCNGC	8 cut(s)	675, 2307, 2508, 2853, 2883, 3030, 3033, 3036
GsuI	CTGGAG	3 cut(s)	1155, 1935, 2679
HaeIII	GGCC	7 cut(s)	201, 652, 1191, 1593, 1665, 1797, 2330
HapII	CCGG	7 cut(s)	132, 208, 614, 621, 637, 1257, 2178
HgaI	GACGC	1 cut(s)	2406
HhaI	GCGC	5 cut(s)	173, 213, 215, 1847, 2028
Hin1I	GRCGYC	1 cut(s)	2417
Hin6I	GCGC	5 cut(s)	171, 211, 213, 1845, 2026
HinP1I	GCGC	5 cut(s)	171, 211, 213, 1845, 2026
HincII	GTYRAC	1 cut(s)	1356
HindII	GTYRAC	1 cut(s)	1356
HindIII	AAGCTT	3 cut(s)	334, 1170, 3125
HinfI	GANTC	7 cut(s)	191, 355, 631, 1000, 1620, 1867, 2587
HpaI	GTTAAC	1 cut(s)	1356
HpaII	CCGG	7 cut(s)	132, 208, 614, 621, 637, 1257, 2178
HphI	GGTGA	7 cut(s)	306, 610, 626, 962, 1936, 2261, 3148
Hpy166II	GTNNAC	5 cut(s)	10, 413, 1356, 1877, 2166
Hpy188I	TCNGA	8 cut(s)	733, 1516, 1929, 2032, 2140, 2348, 2877, 3022
Hpy188III	TCNNGA	7 cut(s)	575, 795, 1004, 1100, 2591, 2658, 2834
Hpy8I	GTNNAC	5 cut(s)	10, 413, 1356, 1877, 2166
Hpy99I	CGWCG	2 cut(s)	2422, 2766
HpyCH4III	ACNGT	7 cut(s)	446, 974, 2147, 2170, 2289, 2981, 3188
HpyCH4IV	ACGT	3 cut(s)	2111, 2533, 2721
HpySE526I	ACGT	3 cut(s)	2111, 2533, 2721
Hsp92I	GRCGYC	1 cut(s)	2417
HspAI	GCGC	5 cut(s)	171, 211, 213, 1845, 2026
KflI	GGGWCCC	1 cut(s)	703
KpnI	GGTACC	3 cut(s)	1332, 2022, 2072
Ksp22I	TGATCA	2 cut(s)	733, 2140
KspAI	GTTAAC	1 cut(s)	1356
LguI	GCTCTTC	1 cut(s)	3087
LmnI	GCTCC	9 cut(s)	178, 616, 1052, 1136, 1525, 1760, 1954, 2299, 2827
Lsp1109I	GCAGC	8 cut(s)	661, 2293, 2494, 2839, 2869, 3019, 3022, 3041
LweI	GCATC	7 cut(s)	997, 2023, 2191, 2224, 2242, 2899, 3106
MaeI	CTAG	6 cut(s)	575, 795, 1494, 2729, 2927, 3026
MaeII	ACGT	3 cut(s)	2111, 2533, 2721
MaeIII	GTNAC	4 cut(s)	616, 2529, 2815, 2864
MbiI	CCGCTC	1 cut(s)	1949
MfeI	CAATTG	1 cut(s)	813
MflI	RGATCY	5 cut(s)	767, 1963, 2101, 2545, 2654
MhlI	GDGCHC	2 cut(s)	647, 3082
MlsI	TGGCCA	2 cut(s)	1593, 2330
MluNI	TGGCCA	2 cut(s)	1593, 2330
MlyI	GAGTC	2 cut(s)	185, 2596
MmeI	TCCRAC	1 cut(s)	639
Mox20I	TGGCCA	2 cut(s)	1593, 2330
MroXI	GAANNNNTTC	6 cut(s)	1576, 1752, 1833, 2085, 2482, 2499
MscI	TGGCCA	2 cut(s)	1593, 2330
MslI	CAYNNNNRTG	3 cut(s)	384, 1181, 2171
Msp20I	TGGCCA	2 cut(s)	1593, 2330
MspA1I	CMGCKG	1 cut(s)	3032
MspCI	CTTAAG	1 cut(s)	2359
MspI	CCGG	7 cut(s)	132, 208, 614, 621, 637, 1257, 2178
MspR9I	CCNGG	6 cut(s)	132, 208, 1971, 2179, 2744, 3103
MunI	CAATTG	1 cut(s)	813
Mva1269I	GAATGC	3 cut(s)	2360, 2484, 2739
MvaI	CCWGG	3 cut(s)	1971, 2744, 3103
MvnI	CGCG	2 cut(s)	171, 213
NciI	CCSGG	3 cut(s)	132, 208, 2179
NcoI	CCATGG	3 cut(s)	1677, 1839, 2823
NdeI	CATATG	2 cut(s)	1182, 2311
NheI	GCTAGC	1 cut(s)	3025
NmeAIII	GCCGAG	1 cut(s)	628
NmuCI	GTSAC	3 cut(s)	616, 2529, 2864
NspI	RCATGY	1 cut(s)	1426
NspV	TTCGAA	1 cut(s)	22
PaeR7I	CTCGAG	1 cut(s)	2262
PalAI	GGCGCGCC	1 cut(s)	211
PauI	GCGCGC	1 cut(s)	211
PciSI	GCTCTTC	1 cut(s)	3087
PctI	GAATGC	3 cut(s)	2360, 2484, 2739
PdmI	GAANNNNTTC	6 cut(s)	1576, 1752, 1833, 2085, 2482, 2499
PfeI	GAWTC	5 cut(s)	355, 631, 1000, 1620, 1867
PflMI	CCANNNNNTGG	2 cut(s)	512, 1883
PinAI	ACCGGT	1 cut(s)	636
PkrI	GCNGC	8 cut(s)	676, 2308, 2509, 2854, 2884, 3031, 3034, 3037
PleI	GAGTC	2 cut(s)	185, 2595
PmaCI	CACGTG	1 cut(s)	2534
PmlI	CACGTG	1 cut(s)	2534
PpsI	GAGTC	2 cut(s)	185, 2595
Ppu21I	YACGTR	1 cut(s)	2534
PpuMI	RGGWCCY	1 cut(s)	703
PshBI	ATTAAT	2 cut(s)	933, 2963
Psp124BI	GAGCTC	1 cut(s)	3082
Psp5II	RGGWCCY	1 cut(s)	703
Psp6I	CCWGG	3 cut(s)	1969, 2742, 3101
PspCI	CACGTG	1 cut(s)	2534
PspEI	GGTNACC	1 cut(s)	616
PspGI	CCWGG	3 cut(s)	1969, 2742, 3101
PspPI	GGNCC	7 cut(s)	376, 661, 703, 1189, 1254, 1813, 1874
PspPPI	RGGWCCY	1 cut(s)	703
PspXI	VCTCGAGB	1 cut(s)	2262
PsrI	GAACNNNNNNTAC	2 cut(s)	508, 540
PstNI	CAGNNNCTG	2 cut(s)	2717, 3035
PsuI	RGATCY	5 cut(s)	767, 1963, 2101, 2545, 2654
PteI	GCGCGC	1 cut(s)	211
PvuII	CAGCTG	1 cut(s)	3032
RsaI	GTAC	4 cut(s)	304, 1330, 2020, 2070
RsaNI	GTAC	4 cut(s)	303, 1329, 2019, 2069
RseI	CAYNNNNRTG	3 cut(s)	384, 1181, 2171
SacI	GAGCTC	1 cut(s)	3082
SapI	GCTCTTC	1 cut(s)	3087
SatI	GCNGC	8 cut(s)	675, 2307, 2508, 2853, 2883, 3030, 3033, 3036
Sau96I	GGNCC	7 cut(s)	376, 661, 703, 1189, 1254, 1813, 1874
SchI	GAGTC	2 cut(s)	185, 2596
ScrFI	CCNGG	6 cut(s)	132, 208, 1971, 2179, 2744, 3103
SduI	GDGCHC	2 cut(s)	647, 3082
SfaNI	GCATC	7 cut(s)	997, 2023, 2191, 2224, 2242, 2899, 3106
SfcI	CTRYAG	3 cut(s)	396, 1416, 1537
Sfr274I	CTCGAG	1 cut(s)	2262
SfuI	TTCGAA	1 cut(s)	22
SgsI	GGCGCGCC	1 cut(s)	211
SinI	GGWCC	6 cut(s)	376, 661, 703, 1254, 1813, 1874
SlaI	CTCGAG	1 cut(s)	2262
SmiI	ATTTAAAT	1 cut(s)	1608
SmiMI	CAYNNNNRTG	3 cut(s)	384, 1181, 2171
SmlI	CTYRAG	5 cut(s)	1151, 1529, 2262, 2359, 3004
SmoI	CTYRAG	5 cut(s)	1151, 1529, 2262, 2359, 3004
SsiI	CCGC	5 cut(s)	323, 1446, 1947, 2614, 2891
SspI	AATATT	2 cut(s)	1249, 1588
SspMI	CTAG	6 cut(s)	575, 795, 1494, 2729, 2927, 3026
SstI	GAGCTC	1 cut(s)	3082
StyD4I	CCNGG	6 cut(s)	130, 206, 1969, 2177, 2742, 3101
StyI	CCWWGG	4 cut(s)	1677, 1839, 2609, 2823
SwaI	ATTTAAAT	1 cut(s)	1608
TaaI	ACNGT	7 cut(s)	446, 974, 2147, 2170, 2289, 2981, 3188
TaiI	ACGT	3 cut(s)	2114, 2536, 2724
TaqI	TCGA	8 cut(s)	22, 50, 629, 871, 1162, 1712, 2263, 2703
TaqII	GACCGA	1 cut(s)	1613
TfiI	GAWTC	5 cut(s)	355, 631, 1000, 1620, 1867
TscAI	CASTG	5 cut(s)	153, 1959, 2152, 2173, 2214
TseFI	GTSAC	3 cut(s)	616, 2529, 2864
TseI	GCWGC	8 cut(s)	674, 2306, 2507, 2852, 2882, 3029, 3032, 3035
Tsp45I	GTSAC	3 cut(s)	616, 2529, 2864
TspGWI	ACGGA	2 cut(s)	1648, 2750
TspRI	CASTG	5 cut(s)	153, 1959, 2152, 2173, 2214
Van91I	CCANNNNNTGG	2 cut(s)	512, 1883
Vha464I	CTTAAG	1 cut(s)	2359
VpaK11BI	GGWCC	6 cut(s)	376, 661, 703, 1254, 1813, 1874
VspI	ATTAAT	2 cut(s)	933, 2963
XagI	CCTNNNNNAGG	1 cut(s)	1076
XapI	RAATTY	6 cut(s)	17, 548, 855, 1141, 1292, 2574
XbaI	TCTAGA	2 cut(s)	574, 794
XceI	RCATGY	1 cut(s)	1426
XcmI	CCANNNNNNNNNTGG	1 cut(s)	150
XhoI	CTCGAG	1 cut(s)	2262
XmiI	GTMKAC	1 cut(s)	9
XmnI	GAANNNNTTC	6 cut(s)	1576, 1752, 1833, 2085, 2482, 2499
XspI	CTAG	6 cut(s)	575, 795, 1494, 2729, 2927, 3026

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.