Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009005.1

Orthogroup ID

OG0009689

Physical Location & Seq

Genomic Coordinates Reverse (-)

62553 .. 67266

Gene Structure 4714 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009005.1_g000014.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 951 bp

atggggaagaaagaaggagacttgtgggacgattcggctctcatcaatgctttcgacaacgccatgactacctacaagaaaatgcatagcaagaaacccactcaaggtccaacccaggaacacaaacttgtgagcagtcccgaagaacaagtcactgttgaggctggtgaaacccaggaggctaaaagaatacaaggggatgcagatgacctgacaaaagatgtgcagaagactactatggaaatgggagagaccagtaatctttcagaagctaaagaaaatcgttgtttagattcatatgtacctgacccctattcacaagatgctcaggacgtgcaaaacaactgttcatattcagaaggtggagaagattatacaaagttactcaaccagtattatgagattgaggagaaaagacagaagattctagagaaacttcatcaatttggtggtgggaattaccagtattctggcgaaggttcaggttcaggttctggtgtacagtggggtactgtttctagttacgaacaaaatgcagtccctgctagccaaccttgtgatccggctgttgtgggttcatgttgcccgtacatgtgtccgtgcttgatgactgcatgcactgcatttcctgcttgtccgttggattcgacatgtgctggtataacttgtacggaagcttgtttggcaacaagtaatgggaaaccattatctcttgaagatagaaaaattgtcaagacagcatttgggactgcagaaagagcattatcatccatcaaaacaaatattactgttgattctagtatgagtgaagagaaagatgaatcagaaatggctgaaactactggctcagagacagatatcagtgtggtactgaatgcatggtattccgcaggtttctacactggcaagtatcttgtggagcaatccattgcaaagaagcgacaaagttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SMN

Protein Analysis

316

Amino Acids

34.43

Weight (kDa)

4.61

Isoelectric Point (pI)

55.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009689)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g23080 FvH4_5g23080 FvH4_5g23080 FvH4_5g23080 FvH4_5g23080 FvH4_5g23080
malus_domestica	MD06G1026300.v1.1
prunus_persica	Prupe.5G028100_v2.0.a1 Prupe.5G028100_v2.0.a1
pyrus_communis	pycom06g02150
rosa_chinensis	RchiOBHm_Chr7g0211801
rosa_laevigata	RLG00000002968
rosa_multiflora	Rmu_sc0009005.1_g000014 Rmu_sc0017926.1_g000001
rosa_roxburghii	Rroxscaffold_3G00247420
rosa_rugosa	Rorug07G0128800 Rorug07G0128800
rosa_samantha	Rh7AG261500 Rh7BG255100 Rh7CG278100 Rh7DG268100
rosa_wichuraiana	Rw7G022300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	881
AciI	CCGC	1 cut(s)	888
AclWI	GGATC	1 cut(s)	554
AfaI	GTAC	6 cut(s)	303, 501, 511, 590, 670, 870
AfiI	CCNNNNNNNGG	1 cut(s)	104
AflIII	ACRYGT	2 cut(s)	591, 650
AgsI	TTSAA	1 cut(s)	716
AjiI	CACGTC	1 cut(s)	334
AjnI	CCWGG	2 cut(s)	114, 174
AluBI	AGCT	2 cut(s)	272, 677
AluI	AGCT	2 cut(s)	272, 677
Alw26I	GTCTC	3 cut(s)	12, 245, 845
AlwI	GGATC	1 cut(s)	554
AlwNI	CAGNNNCTG	2 cut(s)	494, 542
ArsI	GACNNNNNNTTYG	2 cut(s)	135, 167
AspS9I	GGNCC	1 cut(s)	107
AsuHPI	GGTGA	1 cut(s)	179
AsuNHI	GCTAGC	1 cut(s)	545
AvaII	GGWCC	1 cut(s)	107
BbsI	GAAGAC	1 cut(s)	236
BccI	CCATC	1 cut(s)	779
BcgI	CGANNNNNNTGC	2 cut(s)	515, 549
BciT130I	CCWGG	2 cut(s)	116, 176
BcoDI	GTCTC	3 cut(s)	12, 245, 845
BfaI	CTAG	4 cut(s)	428, 519, 546, 798
BfmI	CTRYAG	1 cut(s)	750
BfuAI	ACCTGC	1 cut(s)	881
Bme1390I	CCNGG	2 cut(s)	116, 176
Bme18I	GGWCC	1 cut(s)	107
BmgBI	CACGTC	1 cut(s)	334
BmgT120I	GGNCC	1 cut(s)	107
BmrFI	CCNGG	2 cut(s)	116, 176
BmsI	GCATC	2 cut(s)	190, 313
BmtI	GCTAGC	1 cut(s)	549
BpiI	GAAGAC	1 cut(s)	236
Bpu10I	CCTNAGC	1 cut(s)	327
BpuEI	CTTGAG	1 cut(s)	87
BsaI	GGTCTC	1 cut(s)	245
BsaJI	CCNNGG	2 cut(s)	114, 174
Bsc4I	CCNNNNNNNGG	1 cut(s)	104
Bse1I	ACTGG	5 cut(s)	255, 391, 463, 847, 907
Bse3DI	GCAATG	1 cut(s)	927
BseBI	CCWGG	2 cut(s)	116, 176
BseDI	CCNNGG	2 cut(s)	114, 174
BseGI	GGATG	2 cut(s)	205, 767
BseLI	CCNNNNNNNGG	1 cut(s)	104
BseMI	GCAATG	1 cut(s)	927
BseMII	CTCAG	2 cut(s)	341, 861
BseNI	ACTGG	5 cut(s)	255, 391, 463, 847, 907
BseRI	GAGGAG	1 cut(s)	422
BsgI	GTGCAG	1 cut(s)	245
BsiSI	CCGG	1 cut(s)	563
BslFI	GGGAC	4 cut(s)	41, 123, 524, 760
BslI	CCNNNNNNNGG	1 cut(s)	104
BsmAI	GTCTC	3 cut(s)	12, 245, 845
BsmFI	GGGAC	4 cut(s)	41, 123, 524, 760
BsmI	GAATGC	1 cut(s)	880
Bso31I	GGTCTC	1 cut(s)	245
Bsp1407I	TGTACA	1 cut(s)	499
Bsp143I	GATC	1 cut(s)	559
BspACI	CCGC	1 cut(s)	888
BspCNI	CTCAG	2 cut(s)	340, 860
BspMAI	CTGCAG	1 cut(s)	754
BspMI	ACCTGC	1 cut(s)	881
BspOI	GCTAGC	1 cut(s)	549
BspPI	GGATC	1 cut(s)	554
BspTNI	GGTCTC	1 cut(s)	245
BsrDI	GCAATG	1 cut(s)	927
BsrGI	TGTACA	1 cut(s)	499
BsrI	ACTGG	5 cut(s)	255, 391, 463, 847, 907
BssECI	CCNNGG	2 cut(s)	114, 174
BssMI	GATC	1 cut(s)	559
Bst2UI	CCWGG	2 cut(s)	116, 176
Bst4CI	ACNGT	5 cut(s)	157, 347, 504, 514, 790
Bst6I	CTCTTC	1 cut(s)	804
BstAPI	GCANNNNNTGC	3 cut(s)	542, 620, 629
BstAUI	TGTACA	1 cut(s)	499
BstC8I	GCNNGC	2 cut(s)	547, 616
BstDEI	CTNAG	2 cut(s)	327, 847
BstF5I	GGATG	2 cut(s)	205, 767
BstKTI	GATC	1 cut(s)	562
BstMAI	GTCTC	3 cut(s)	12, 245, 845
BstMBI	GATC	1 cut(s)	559
BstMWI	GCNNNNNNNGC	5 cut(s)	542, 620, 629, 683, 758
BstNI	CCWGG	2 cut(s)	116, 176
BstNSI	RCATGY	3 cut(s)	595, 618, 654
BstSCI	CCNGG	2 cut(s)	114, 174
BstSFI	CTRYAG	1 cut(s)	750
BstV2I	GAAGAC	1 cut(s)	236
BstXI	CCANNNNNNTGG	1 cut(s)	470
BtrI	CACGTC	1 cut(s)	334
BtsCI	GGATG	2 cut(s)	205, 767
BtsI	GCAGTG	1 cut(s)	618
BtsIMutI	CAGTG	5 cut(s)	153, 509, 618, 868, 900
BveI	ACCTGC	1 cut(s)	881
Cac8I	GCNNGC	2 cut(s)	547, 616
CaiI	CAGNNNCTG	2 cut(s)	494, 542
Cfr13I	GGNCC	1 cut(s)	107
Csp6I	GTAC	6 cut(s)	302, 500, 510, 589, 669, 869
CviAII	CATG	6 cut(s)	64, 579, 592, 615, 651, 879
CviJI	RGCY	9 cut(s)	38, 164, 182, 272, 549, 566, 677, 833, 846
CviKI_1	RGCY	9 cut(s)	38, 164, 182, 272, 549, 566, 677, 833, 846
CviQI	GTAC	6 cut(s)	302, 500, 510, 589, 669, 869
DdeI	CTNAG	2 cut(s)	327, 847
DpnI	GATC	1 cut(s)	561
DpnII	GATC	1 cut(s)	559
Eam1104I	CTCTTC	1 cut(s)	804
EarI	CTCTTC	1 cut(s)	804
Eco31I	GGTCTC	1 cut(s)	245
Eco32I	GATATC	1 cut(s)	859
Eco47I	GGWCC	1 cut(s)	107
EcoRII	CCWGG	2 cut(s)	114, 174
EcoRV	GATATC	1 cut(s)	859
EcoT22I	ATGCAT	2 cut(s)	87, 880
FaeI	CATG	6 cut(s)	67, 582, 595, 618, 654, 882
FaqI	GGGAC	4 cut(s)	41, 123, 524, 760
FatI	CATG	6 cut(s)	63, 578, 591, 614, 650, 878
FauNDI	CATATG	1 cut(s)	298
FokI	GGATG	2 cut(s)	212, 754
FspBI	CTAG	4 cut(s)	428, 519, 546, 798
HapII	CCGG	1 cut(s)	563
Hin1II	CATG	6 cut(s)	67, 582, 595, 618, 654, 882
HindIII	AAGCTT	1 cut(s)	675
HinfI	GANTC	6 cut(s)	32, 293, 424, 644, 794, 821
HpaII	CCGG	1 cut(s)	563
HphI	GGTGA	1 cut(s)	179
Hpy166II	GTNNAC	1 cut(s)	500
Hpy188I	TCNGA	4 cut(s)	268, 358, 826, 850
Hpy188III	TCNNGA	5 cut(s)	140, 329, 428, 713, 733
Hpy8I	GTNNAC	1 cut(s)	500
HpyAV	CCTTC	3 cut(s)	8, 353, 470
HpyCH4III	ACNGT	5 cut(s)	157, 347, 504, 514, 790
HpyCH4IV	ACGT	1 cut(s)	333
HpyF10VI	GCNNNNNNNGC	5 cut(s)	542, 620, 629, 683, 758
HpyF3I	CTNAG	2 cut(s)	327, 847
HpySE526I	ACGT	1 cut(s)	333
Hsp92II	CATG	6 cut(s)	67, 582, 595, 618, 654, 882
Kzo9I	GATC	1 cut(s)	559
LmnI	GCTCC	1 cut(s)	919
LweI	GCATC	2 cut(s)	190, 313
MaeI	CTAG	4 cut(s)	428, 519, 546, 798
MaeII	ACGT	1 cut(s)	333
MaeIII	GTNAC	3 cut(s)	151, 381, 521
MalI	GATC	1 cut(s)	561
MboI	GATC	1 cut(s)	559
MboII	GAAGA	7 cut(s)	19, 155, 241, 380, 433, 728, 821
MluCI	AATT	3 cut(s)	443, 457, 726
MmeI	TCCRAC	2 cut(s)	134, 621
MnlI	CCTC	3 cut(s)	154, 172, 400
Mph1103I	ATGCAT	2 cut(s)	87, 880
MseI	TTAA	1 cut(s)	949
MspI	CCGG	1 cut(s)	563
MspR9I	CCNGG	2 cut(s)	116, 176
Mva1269I	GAATGC	1 cut(s)	880
MvaI	CCWGG	2 cut(s)	116, 176
MwoI	GCNNNNNNNGC	5 cut(s)	542, 620, 629, 683, 758
NdeI	CATATG	1 cut(s)	298
NdeII	GATC	1 cut(s)	559
NheI	GCTAGC	1 cut(s)	545
NlaIII	CATG	6 cut(s)	67, 582, 595, 618, 654, 882
NmuCI	GTSAC	1 cut(s)	151
NsiI	ATGCAT	2 cut(s)	87, 880
NspI	RCATGY	3 cut(s)	595, 618, 654
PaeI	GCATGC	1 cut(s)	618
PciI	ACATGT	2 cut(s)	591, 650
PctI	GAATGC	1 cut(s)	880
PfeI	GAWTC	6 cut(s)	32, 293, 424, 644, 794, 821
PscI	ACATGT	2 cut(s)	591, 650
Psp6I	CCWGG	2 cut(s)	114, 174
PspGI	CCWGG	2 cut(s)	114, 174
PspPI	GGNCC	1 cut(s)	107
PstI	CTGCAG	1 cut(s)	754
PstNI	CAGNNNCTG	2 cut(s)	494, 542
RsaI	GTAC	6 cut(s)	303, 501, 511, 590, 670, 870
RsaNI	GTAC	6 cut(s)	302, 500, 510, 589, 669, 869
SaqAI	TTAA	1 cut(s)	949
Sau3AI	GATC	1 cut(s)	559
Sau96I	GGNCC	1 cut(s)	107
ScrFI	CCNGG	2 cut(s)	116, 176
SfaNI	GCATC	2 cut(s)	190, 313
SfcI	CTRYAG	1 cut(s)	750
SinI	GGWCC	1 cut(s)	107
SmlI	CTYRAG	1 cut(s)	102
SmoI	CTYRAG	1 cut(s)	102
SphI	GCATGC	1 cut(s)	618
Sse9I	AATT	3 cut(s)	443, 457, 726
SsiI	CCGC	1 cut(s)	888
SspI	AATATT	1 cut(s)	784
SspMI	CTAG	4 cut(s)	428, 519, 546, 798
StyD4I	CCNGG	2 cut(s)	114, 174
TaaI	ACNGT	5 cut(s)	157, 347, 504, 514, 790
TaiI	ACGT	1 cut(s)	336
TaqI	TCGA	2 cut(s)	54, 647
TasI	AATT	3 cut(s)	443, 457, 726
TatI	WGTACW	1 cut(s)	499
TfiI	GAWTC	6 cut(s)	32, 293, 424, 644, 794, 821
Tru1I	TTAA	1 cut(s)	949
Tru9I	TTAA	1 cut(s)	949
TscAI	CASTG	5 cut(s)	160, 509, 625, 868, 907
TseFI	GTSAC	1 cut(s)	151
Tsp45I	GTSAC	1 cut(s)	151
TspDTI	ATGAA	5 cut(s)	285, 339, 428, 567, 834
TspGWI	ACGGA	3 cut(s)	588, 627, 686
TspRI	CASTG	5 cut(s)	160, 509, 625, 868, 907
VpaK11BI	GGWCC	1 cut(s)	107
XbaI	TCTAGA	1 cut(s)	427
XceI	RCATGY	3 cut(s)	595, 618, 654
XspI	CTAG	4 cut(s)	428, 519, 546, 798
Zsp2I	ATGCAT	2 cut(s)	87, 880

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.