Rh7BG255100

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0009689
Physical Location & Seq
Forward (+)
23249117 .. 23253991
4875 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG255100.1

Sequence Viewer

Length: 828 bp
ATGGGGAAGAAAGAAGGAGACTTGTGGGACGATTCGGCTCTCATCAATGCTTTCGACAACGCCATGACTACCTACAAGAAAATGCATAGCAAGAAACCCACTCAAGGTCCAACCCAGGAAGACAAACTTGTGAGCAGTCCTGAAGAACAAGTCATTGTTGAGGCTGGTCAAACCCAGGAGGCTAAAAGAGTACAAGGGGATGCAGATGACCTGACAAAAGATATGCAGAAGACTACTATGGAAATGGGAGAGACCAGTAATCTTTCAGAAGTTAAAGAAAATCATTGTTTAGATTCATATGTACCTGACCCCTATTCACAAGATGCTCAGGACATGCAAAACAACTATTCATATTCAGAAGGTGGAGAAGATTATACAAAGTTACTCAACCAGTATTATGAGATTGAGGAGAAAAGACAGAAGATTCTAGAGAAACTTCATCAATTTGGTGGTGGGAATTACCAGTATTCTGGCGAAGGTTCAGGTTCAGGTTCTGGTGTACAGTGGGGTACTGTTTCTAGTCACGAACAAAATGCAGTCCCTGCTAGCCAACCTTCTGATCCGGCTGTTGTGGGTTCATGTTGCCCATACATGTGTCCGTGCTTGATGACTTCATGCACTGCATTTCCTGCTTGTCCGTTGGATTCGACATGTGCTGGTATAACTTGTACGGAAGCTTGTTTGGCAACAAGTAATGGGAAACCATTATCTCTTGAAGATAGAAAAATTGTCAAGACAGCATTTGGGACTGCAGAAAGAGCATTATCATCCATGAAAACAAATATTACTGTTGATTCTAGTATAAGTGAAGGTAAGAATTCCTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SMN

Protein Analysis

275

Amino Acids

29.93

Weight (kDa)

4.65

Isoelectric Point (pI)

50.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SMN_G2-BD PF20636 4 - 30 1.7e-13 Survival Motor Neuron, Gemin2-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 554
AcsI RAATTY 1 cut(s) 817
AcuI CTGAAG 1 cut(s) 162
AfaI GTAC 5 cut(s) 192, 303, 501, 511, 670
AfiI CCNNNNNNNGG 1 cut(s) 104
AflIII ACRYGT 2 cut(s) 591, 650
AgsI TTSAA 1 cut(s) 716
AjnI CCWGG 2 cut(s) 114, 174
AluBI AGCT 1 cut(s) 677
AluI AGCT 1 cut(s) 677
Alw26I GTCTC 2 cut(s) 12, 245
AlwI GGATC 1 cut(s) 554
AlwNI CAGNNNCTG 2 cut(s) 494, 542
ApoI RAATTY 1 cut(s) 817
AspS9I GGNCC 1 cut(s) 107
AsuNHI GCTAGC 1 cut(s) 545
AvaII GGWCC 1 cut(s) 107
BbsI GAAGAC 2 cut(s) 126, 236
BcgI CGANNNNNNTGC 2 cut(s) 515, 549
BciT130I CCWGG 2 cut(s) 116, 176
BcoDI GTCTC 2 cut(s) 12, 245
BfaI CTAG 4 cut(s) 428, 519, 546, 798
BfmI CTRYAG 1 cut(s) 750
Bme1390I CCNGG 2 cut(s) 116, 176
Bme18I GGWCC 1 cut(s) 107
BmgT120I GGNCC 1 cut(s) 107
BmrFI CCNGG 2 cut(s) 116, 176
BmsI GCATC 2 cut(s) 190, 313
BmtI GCTAGC 1 cut(s) 549
BpiI GAAGAC 2 cut(s) 126, 236
Bpu10I CCTNAGC 1 cut(s) 327
BpuEI CTTGAG 1 cut(s) 87
BsaI GGTCTC 1 cut(s) 245
BsaJI CCNNGG 2 cut(s) 114, 174
Bsc4I CCNNNNNNNGG 1 cut(s) 104
Bse1I ACTGG 3 cut(s) 255, 391, 463
BseBI CCWGG 2 cut(s) 116, 176
BseDI CCNNGG 2 cut(s) 114, 174
BseGI GGATG 2 cut(s) 205, 767
BseLI CCNNNNNNNGG 1 cut(s) 104
BseMII CTCAG 1 cut(s) 341
BseNI ACTGG 3 cut(s) 255, 391, 463
BseRI GAGGAG 1 cut(s) 422
BsiSI CCGG 1 cut(s) 563
BslFI GGGAC 3 cut(s) 41, 524, 760
BslI CCNNNNNNNGG 1 cut(s) 104
BsmAI GTCTC 2 cut(s) 12, 245
BsmFI GGGAC 3 cut(s) 41, 524, 760
Bso31I GGTCTC 1 cut(s) 245
Bsp1407I TGTACA 1 cut(s) 499
Bsp143I GATC 1 cut(s) 559
BspCNI CTCAG 1 cut(s) 340
BspMAI CTGCAG 1 cut(s) 754
BspOI GCTAGC 1 cut(s) 549
BspPI GGATC 1 cut(s) 554
BspTNI GGTCTC 1 cut(s) 245
BsrGI TGTACA 1 cut(s) 499
BsrI ACTGG 3 cut(s) 255, 391, 463
BssECI CCNNGG 2 cut(s) 114, 174
BssMI GATC 1 cut(s) 559
Bst2UI CCWGG 2 cut(s) 116, 176
Bst4CI ACNGT 3 cut(s) 504, 514, 790
BstAPI GCANNNNNTGC 2 cut(s) 542, 629
BstAUI TGTACA 1 cut(s) 499
BstC8I GCNNGC 1 cut(s) 547
BstDEI CTNAG 1 cut(s) 327
BstF5I GGATG 2 cut(s) 205, 767
BstKTI GATC 1 cut(s) 562
BstMAI GTCTC 2 cut(s) 12, 245
BstMBI GATC 1 cut(s) 559
BstMWI GCNNNNNNNGC 4 cut(s) 542, 629, 683, 758
BstNI CCWGG 2 cut(s) 116, 176
BstNSI RCATGY 3 cut(s) 337, 595, 654
BstSCI CCNGG 2 cut(s) 114, 174
BstSFI CTRYAG 1 cut(s) 750
BstV2I GAAGAC 2 cut(s) 126, 236
BstXI CCANNNNNNTGG 1 cut(s) 470
BtsCI GGATG 2 cut(s) 205, 767
BtsI GCAGTG 1 cut(s) 618
BtsIMutI CAGTG 2 cut(s) 509, 618
Cac8I GCNNGC 1 cut(s) 547
CaiI CAGNNNCTG 2 cut(s) 494, 542
Cfr13I GGNCC 1 cut(s) 107
Csp6I GTAC 5 cut(s) 191, 302, 500, 510, 669
CviAII CATG 7 cut(s) 64, 334, 579, 592, 615, 651, 772
CviJI RGCY 6 cut(s) 38, 164, 182, 549, 566, 677
CviKI_1 RGCY 6 cut(s) 38, 164, 182, 549, 566, 677
CviQI GTAC 5 cut(s) 191, 302, 500, 510, 669
DdeI CTNAG 1 cut(s) 327
DpnI GATC 1 cut(s) 561
DpnII GATC 1 cut(s) 559
Eco31I GGTCTC 1 cut(s) 245
Eco47I GGWCC 1 cut(s) 107
Eco57I CTGAAG 1 cut(s) 162
EcoRI GAATTC 1 cut(s) 817
EcoRII CCWGG 2 cut(s) 114, 174
EcoT22I ATGCAT 1 cut(s) 87
FaeI CATG 7 cut(s) 67, 337, 582, 595, 618, 654, 775
FalI AAGNNNNNCTT 2 cut(s) 111, 143
FaqI GGGAC 3 cut(s) 41, 524, 760
FatI CATG 7 cut(s) 63, 333, 578, 591, 614, 650, 771
FauNDI CATATG 1 cut(s) 298
FokI GGATG 2 cut(s) 212, 754
FspBI CTAG 4 cut(s) 428, 519, 546, 798
HapII CCGG 1 cut(s) 563
Hin1II CATG 7 cut(s) 67, 337, 582, 595, 618, 654, 775
HindIII AAGCTT 1 cut(s) 675
HinfI GANTC 5 cut(s) 32, 293, 424, 644, 794
HpaII CCGG 1 cut(s) 563
Hpy166II GTNNAC 1 cut(s) 500
Hpy188I TCNGA 3 cut(s) 268, 358, 559
Hpy188III TCNNGA 6 cut(s) 140, 329, 428, 524, 713, 733
Hpy8I GTNNAC 1 cut(s) 500
HpyAV CCTTC 5 cut(s) 8, 353, 470, 564, 803
HpyCH4III ACNGT 3 cut(s) 504, 514, 790
HpyCH4V TGCA 8 cut(s) 85, 203, 226, 337, 536, 618, 623, 752
HpyF10VI GCNNNNNNNGC 4 cut(s) 542, 629, 683, 758
HpyF3I CTNAG 1 cut(s) 327
Hsp92II CATG 7 cut(s) 67, 337, 582, 595, 618, 654, 775
Kzo9I GATC 1 cut(s) 559
LweI GCATC 2 cut(s) 190, 313
MaeI CTAG 4 cut(s) 428, 519, 546, 798
MaeIII GTNAC 2 cut(s) 381, 521
MalI GATC 1 cut(s) 561
MboI GATC 1 cut(s) 559
MboII GAAGA 7 cut(s) 19, 131, 155, 241, 380, 433, 728
MluCI AATT 4 cut(s) 443, 457, 726, 817
MmeI TCCRAC 2 cut(s) 134, 621
MnlI CCTC 3 cut(s) 154, 172, 400
Mph1103I ATGCAT 1 cut(s) 87
MseI TTAA 1 cut(s) 273
MslI CAYNNNNRTG 1 cut(s) 592
MspI CCGG 1 cut(s) 563
MspR9I CCNGG 2 cut(s) 116, 176
MvaI CCWGG 2 cut(s) 116, 176
MwoI GCNNNNNNNGC 4 cut(s) 542, 629, 683, 758
NdeI CATATG 1 cut(s) 298
NdeII GATC 1 cut(s) 559
NheI GCTAGC 1 cut(s) 545
NlaIII CATG 7 cut(s) 67, 337, 582, 595, 618, 654, 775
NmuCI GTSAC 1 cut(s) 521
NsiI ATGCAT 1 cut(s) 87
NspI RCATGY 3 cut(s) 337, 595, 654
PciI ACATGT 2 cut(s) 591, 650
PfeI GAWTC 5 cut(s) 32, 293, 424, 644, 794
PscI ACATGT 2 cut(s) 591, 650
Psp6I CCWGG 2 cut(s) 114, 174
PspGI CCWGG 2 cut(s) 114, 174
PspPI GGNCC 1 cut(s) 107
PstI CTGCAG 1 cut(s) 754
PstNI CAGNNNCTG 2 cut(s) 494, 542
RsaI GTAC 5 cut(s) 192, 303, 501, 511, 670
RsaNI GTAC 5 cut(s) 191, 302, 500, 510, 669
RseI CAYNNNNRTG 1 cut(s) 592
SaqAI TTAA 1 cut(s) 273
Sau3AI GATC 1 cut(s) 559
Sau96I GGNCC 1 cut(s) 107
ScrFI CCNGG 2 cut(s) 116, 176
SfaNI GCATC 2 cut(s) 190, 313
SfcI CTRYAG 1 cut(s) 750
SinI GGWCC 1 cut(s) 107
SmiMI CAYNNNNRTG 1 cut(s) 592
SmlI CTYRAG 1 cut(s) 102
SmoI CTYRAG 1 cut(s) 102
Sse9I AATT 4 cut(s) 443, 457, 726, 817
SspI AATATT 1 cut(s) 784
SspMI CTAG 4 cut(s) 428, 519, 546, 798
StyD4I CCNGG 2 cut(s) 114, 174
TaaI ACNGT 3 cut(s) 504, 514, 790
TaqI TCGA 2 cut(s) 54, 647
TasI AATT 4 cut(s) 443, 457, 726, 817
TatI WGTACW 2 cut(s) 190, 499
TfiI GAWTC 5 cut(s) 32, 293, 424, 644, 794
Tru1I TTAA 1 cut(s) 273
Tru9I TTAA 1 cut(s) 273
TscAI CASTG 2 cut(s) 509, 625
TseFI GTSAC 1 cut(s) 521
Tsp45I GTSAC 1 cut(s) 521
TspDTI ATGAA 6 cut(s) 285, 339, 428, 567, 603, 788
TspGWI ACGGA 3 cut(s) 588, 627, 686
TspRI CASTG 2 cut(s) 509, 625
VpaK11BI GGWCC 1 cut(s) 107
XapI RAATTY 1 cut(s) 817
XbaI TCTAGA 1 cut(s) 427
XceI RCATGY 3 cut(s) 337, 595, 654
XspI CTAG 4 cut(s) 428, 519, 546, 798
Zsp2I ATGCAT 1 cut(s) 87
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.