Prupe.5G041200_v2.0.a1

Uncharacterized conserved domain (SAYSvFN)

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
Physical Location & Seq
Reverse (-)
4521002 .. 4525819
4818 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G041200.1

Sequence Viewer

Length: 720 bp
ATGGATGAGATTGTGGAGGAGCAGGAGTTGATGCCCATTTCTAGGAAGAACATCGGCAATGGTGAAGAGGAGTTTCAGAAGAAGGTGGAGATCGTTGTGAGGACCATAGGCCCTGCTCCCCCTTCTCGTCTCCATGTCCCTTCTCCCATCAGAGTACATGATTTGAGAAAATTGATAGCTGAGAATGGCCATTTACCAATTGAGAAGTTGAGGATTATATTGGGAGGCAATGTATTGCATGATAGCAAAAGTGGGCACGATGCGTACCTACAACTCAGCGACGGTGATTCCCTTATTGTTGCTGTCAAACCAAAGGCACCAGTTAAGCATATTAAGGATGGATTTGATGATGACGATGATGATGAAGATCTGAAGTTTCAGCTTCCACAATCATCAAGCCAGTGGAAGAGGACATTGTACAGCTTTCTTCATGATAAGTTGAAGCTTCCTGATATCCTTTTGATGGCAATTTTCTCTCTAAGTGTGAAGATGTGGATTATTATCATTATGTGGTTTATTTTGGCACCCATTGCCCATAGATGGGACGTTGGCCCTTTGTATATACTGGGCACAGGGTTTGGTATCATCCTCCTGAATCTTGGAAAACGGCAGCCTGGCGATGTCAGTGCATATTCTATTTTCAATGAAGACTTTAGAGAGCTTCCTGGGACTCTTAATGCCGAACGTCTTGACGGGGACATACGAACAGGTCAGTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

240

Amino Acids

26.98

Weight (kDa)

5.62

Isoelectric Point (pI)

52.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0010199)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 316, 523
AcoI YGGCCR 1 cut(s) 187
AcuI CTGAAG 1 cut(s) 392
AfaI GTAC 3 cut(s) 156, 266, 419
AfiI CCNNNNNNNGG 4 cut(s) 42, 463, 540, 541
AgsI TTSAA 2 cut(s) 442, 643
AjnI CCWGG 2 cut(s) 613, 664
AluBI AGCT 5 cut(s) 179, 382, 423, 445, 661
AluI AGCT 5 cut(s) 179, 382, 423, 445, 661
Alw26I GTCTC 1 cut(s) 134
AoxI GGCC 3 cut(s) 109, 187, 550
ApeKI GCWGC 1 cut(s) 610
AspS9I GGNCC 3 cut(s) 102, 110, 551
AsuHPI GGTGA 2 cut(s) 74, 296
AvaII GGWCC 1 cut(s) 102
BaeGI GKGCMC 2 cut(s) 258, 572
BalI TGGCCA 1 cut(s) 189
BanI GGYRCC 2 cut(s) 316, 523
BbsI GAAGAC 1 cut(s) 654
BbvI GCAGC 1 cut(s) 622
BccI CCATC 4 cut(s) 155, 332, 457, 534
BceAI ACGGC 1 cut(s) 623
BcgI CGANNNNNNTGC 2 cut(s) 608, 642
BciT130I CCWGG 2 cut(s) 615, 666
BcoDI GTCTC 1 cut(s) 134
BfaI CTAG 1 cut(s) 42
BglII AGATCT 1 cut(s) 367
BisI GCNGC 1 cut(s) 611
BlsI GCNGC 1 cut(s) 612
Bme1390I CCNGG 2 cut(s) 615, 666
Bme18I GGWCC 1 cut(s) 102
BmgT120I GGNCC 3 cut(s) 102, 110, 551
BmiI GGNNCC 2 cut(s) 318, 525
BmrFI CCNGG 2 cut(s) 615, 666
BmrI ACTGGG 1 cut(s) 575
BmsI GCATC 2 cut(s) 21, 250
BmuI ACTGGG 1 cut(s) 575
BpiI GAAGAC 1 cut(s) 654
BsaBI GATNNNNATC 2 cut(s) 366, 500
BsaJI CCNNGG 1 cut(s) 665
BsaXI ACNNNNNCTCC 4 cut(s) 11, 41, 216, 246
Bsc4I CCNNNNNNNGG 4 cut(s) 42, 463, 540, 541
Bse1I ACTGG 3 cut(s) 320, 400, 570
Bse3DI GCAATG 3 cut(s) 64, 235, 528
Bse8I GATNNNNATC 2 cut(s) 366, 500
BseBI CCWGG 2 cut(s) 615, 666
BseDI CCNNGG 1 cut(s) 665
BseGI GGATG 3 cut(s) 10, 343, 585
BseJI GATNNNNATC 2 cut(s) 366, 500
BseLI CCNNNNNNNGG 4 cut(s) 42, 463, 540, 541
BseMI GCAATG 3 cut(s) 64, 235, 528
BseMII CTCAG 2 cut(s) 171, 289
BseNI ACTGG 3 cut(s) 320, 400, 570
BseRI GAGGAG 2 cut(s) 32, 83
BseSI GKGCMC 2 cut(s) 258, 572
BseXI GCAGC 1 cut(s) 622
BshFI GGCC 3 cut(s) 111, 189, 552
BshNI GGYRCC 2 cut(s) 316, 523
BslFI GGGAC 4 cut(s) 122, 557, 682, 710
BslI CCNNNNNNNGG 4 cut(s) 42, 463, 540, 541
BsmAI GTCTC 1 cut(s) 134
BsmBI CGTCTC 1 cut(s) 134
BsmFI GGGAC 4 cut(s) 122, 557, 682, 710
BsnI GGCC 3 cut(s) 111, 189, 552
Bsp1286I GDGCHC 2 cut(s) 258, 572
Bsp1407I TGTACA 1 cut(s) 417
Bsp143I GATC 2 cut(s) 90, 367
BspANI GGCC 3 cut(s) 111, 189, 552
BspCNI CTCAG 2 cut(s) 172, 288
BspHI TCATGA 1 cut(s) 430
BspLI GGNNCC 2 cut(s) 318, 525
BspT107I GGYRCC 2 cut(s) 316, 523
BsrDI GCAATG 3 cut(s) 64, 235, 528
BsrGI TGTACA 1 cut(s) 417
BsrI ACTGG 3 cut(s) 320, 400, 570
BssECI CCNNGG 1 cut(s) 665
BssMI GATC 2 cut(s) 90, 367
Bst2UI CCWGG 2 cut(s) 615, 666
Bst4CI ACNGT 1 cut(s) 284
Bst6I CTCTTC 2 cut(s) 60, 401
BstAPI GCANNNNNTGC 1 cut(s) 530
BstAUI TGTACA 1 cut(s) 417
BstDEI CTNAG 3 cut(s) 180, 275, 479
BstF5I GGATG 3 cut(s) 10, 343, 585
BstKTI GATC 2 cut(s) 93, 370
BstMAI GTCTC 1 cut(s) 134
BstMBI GATC 2 cut(s) 90, 367
BstMWI GCNNNNNNNGC 1 cut(s) 530
BstNI CCWGG 2 cut(s) 615, 666
BstSCI CCNGG 2 cut(s) 613, 664
BstSLI GKGCMC 2 cut(s) 258, 572
BstV1I GCAGC 1 cut(s) 622
BstV2I GAAGAC 1 cut(s) 654
BstX2I RGATCY 1 cut(s) 367
BstYI RGATCY 1 cut(s) 367
BsuRI GGCC 3 cut(s) 111, 189, 552
BtgZI GCGATG 1 cut(s) 633
BtsCI GGATG 3 cut(s) 10, 343, 585
BtsIMutI CAGTG 2 cut(s) 407, 631
CciI TCATGA 1 cut(s) 430
Cfr13I GGNCC 3 cut(s) 102, 110, 551
Csp6I GTAC 3 cut(s) 155, 265, 418
CviAII CATG 4 cut(s) 134, 158, 239, 431
CviQI GTAC 3 cut(s) 155, 265, 418
DdeI CTNAG 3 cut(s) 180, 275, 479
DpnI GATC 2 cut(s) 92, 369
DpnII GATC 2 cut(s) 90, 367
EaeI YGGCCR 1 cut(s) 187
Eam1104I CTCTTC 2 cut(s) 60, 401
EarI CTCTTC 2 cut(s) 60, 401
Eco32I GATATC 1 cut(s) 454
Eco47I GGWCC 1 cut(s) 102
Eco57I CTGAAG 1 cut(s) 392
EcoO109I RGGNCCY 1 cut(s) 110
EcoRII CCWGG 2 cut(s) 613, 664
EcoRV GATATC 1 cut(s) 454
Esp3I CGTCTC 1 cut(s) 134
FaeI CATG 4 cut(s) 137, 161, 242, 434
FaqI GGGAC 4 cut(s) 122, 557, 682, 710
FatI CATG 4 cut(s) 133, 157, 238, 430
Fnu4HI GCNGC 1 cut(s) 611
FokI GGATG 3 cut(s) 17, 350, 572
Fsp4HI GCNGC 1 cut(s) 611
FspBI CTAG 1 cut(s) 42
GluI GCNGC 1 cut(s) 611
HaeIII GGCC 3 cut(s) 111, 189, 552
Hin1II CATG 4 cut(s) 137, 161, 242, 434
HindIII AAGCTT 1 cut(s) 443
HinfI GANTC 3 cut(s) 287, 595, 670
HphI GGTGA 2 cut(s) 74, 296
Hpy188I TCNGA 3 cut(s) 78, 152, 372
Hpy188III TCNNGA 4 cut(s) 431, 449, 592, 689
Hpy99I CGWCG 1 cut(s) 284
HpyAV CCTTC 3 cut(s) 76, 132, 150
HpyCH4III ACNGT 1 cut(s) 284
HpyCH4IV ACGT 2 cut(s) 546, 685
HpyCH4V TGCA 2 cut(s) 238, 629
HpyF10VI GCNNNNNNNGC 1 cut(s) 530
HpyF3I CTNAG 3 cut(s) 180, 275, 479
HpySE526I ACGT 2 cut(s) 546, 685
Hsp92II CATG 4 cut(s) 137, 161, 242, 434
Kzo9I GATC 2 cut(s) 90, 367
LmnI GCTCC 2 cut(s) 19, 121
Lsp1109I GCAGC 1 cut(s) 622
LweI GCATC 2 cut(s) 21, 250
MaeI CTAG 1 cut(s) 42
MaeII ACGT 2 cut(s) 546, 685
MalI GATC 2 cut(s) 92, 369
MboI GATC 2 cut(s) 90, 367
MboII GAAGA 8 cut(s) 58, 77, 91, 377, 418, 419, 499, 659
MfeI CAATTG 1 cut(s) 198
MflI RGATCY 1 cut(s) 367
MhlI GDGCHC 2 cut(s) 258, 572
MlsI TGGCCA 1 cut(s) 189
MluCI AATT 3 cut(s) 170, 198, 468
MluNI TGGCCA 1 cut(s) 189
MlyI GAGTC 1 cut(s) 664
MnlI CCTC 7 cut(s) 10, 61, 93, 204, 218, 402, 599
Mox20I TGGCCA 1 cut(s) 189
MscI TGGCCA 1 cut(s) 189
MseI TTAA 3 cut(s) 324, 333, 675
Msp20I TGGCCA 1 cut(s) 189
MspR9I CCNGG 2 cut(s) 615, 666
MunI CAATTG 1 cut(s) 198
MvaI CCWGG 2 cut(s) 615, 666
MwoI GCNNNNNNNGC 1 cut(s) 530
NdeII GATC 2 cut(s) 90, 367
NlaIII CATG 4 cut(s) 137, 161, 242, 434
NlaIV GGNNCC 2 cut(s) 318, 525
PagI TCATGA 1 cut(s) 430
PfeI GAWTC 2 cut(s) 287, 595
PkrI GCNGC 1 cut(s) 612
PleI GAGTC 1 cut(s) 664
PpsI GAGTC 1 cut(s) 664
Psp6I CCWGG 2 cut(s) 613, 664
PspGI CCWGG 2 cut(s) 613, 664
PspN4I GGNNCC 2 cut(s) 318, 525
PspPI GGNCC 3 cut(s) 102, 110, 551
PsuI RGATCY 1 cut(s) 367
RsaI GTAC 3 cut(s) 156, 266, 419
RsaNI GTAC 3 cut(s) 155, 265, 418
SaqAI TTAA 3 cut(s) 324, 333, 675
SatI GCNGC 1 cut(s) 611
Sau3AI GATC 2 cut(s) 90, 367
Sau96I GGNCC 3 cut(s) 102, 110, 551
SchI GAGTC 1 cut(s) 664
ScrFI CCNGG 2 cut(s) 615, 666
SduI GDGCHC 2 cut(s) 258, 572
SfaNI GCATC 2 cut(s) 21, 250
SinI GGWCC 1 cut(s) 102
Sse9I AATT 3 cut(s) 170, 198, 468
SspMI CTAG 1 cut(s) 42
StyD4I CCNGG 2 cut(s) 613, 664
TaaI ACNGT 1 cut(s) 284
TaiI ACGT 2 cut(s) 549, 688
TasI AATT 3 cut(s) 170, 198, 468
TatI WGTACW 2 cut(s) 154, 417
TfiI GAWTC 2 cut(s) 287, 595
Tru1I TTAA 3 cut(s) 324, 333, 675
Tru9I TTAA 3 cut(s) 324, 333, 675
TscAI CASTG 2 cut(s) 407, 631
TseI GCWGC 1 cut(s) 610
TspDTI ATGAA 3 cut(s) 378, 419, 660
TspRI CASTG 2 cut(s) 407, 631
VpaK11BI GGWCC 1 cut(s) 102
XspI CTAG 1 cut(s) 42
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.