RchiOBHm_Chr7g0209081

Uncharacterized conserved domain (SAYSvFN)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0010199
Physical Location & Seq
Forward (+)
26454396 .. 26461116
6721 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ18713

Sequence Viewer

Length: 699 bp
ATGGCTGAGATTGTAGAGGAAGAGGAGCTGATACCAATCAATCACAGAAACAATGGCGACGACAAGGTTGGGATCGTTGTACGGACCATTGGCCCAGCTCCCCCTTCTCGTCTTCAGCTCCCCTCTTCTATCAGAGTGCTTGACTTGAGAAAATTGATAGCTGAAAAGTATCAGTTACCATTAGAGAAGTTGAGGCTTATTATGCGAGGCAATGTGTTGCATGACAGCAAAAGTGGGCAAGATGTGAATCTCCAACTCAAGGATGGCGATTCTCTTATCGTTGCTGTCAAACCAAAGCCACCTTCTAAGCATCTTCGGGATGGACTTGACGAGGACGACGACGAAGATGATCTGTTTCAGCTTCCCCAATCATCAAGCCGGTGGAAGAGGAGAGTATATGCTGTTCTACATGATAAGTTGAAGCTTCCTGATATCCTTTTGATGGCCATTTTCTCTCTCAGTTTGAAGATGTGGGTAATTATCATTATGTGGTTTATATTGGCACCTGTGGCCCACCAATGGGATCTTGGCCCTTTATATATACTTGGCACCGGTTTTGGTGTCATTCTTCTGAATCTAGGACAGCGGAAGCCTGGCGATGTCAGTGCATATTCGATTTTCAATGAAGATTTTAGAGAGCTTCCAGGAACCCTTAATGCAGAACGTCTTGATGGGGACATACGGACAGGTCAGATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SAYSvFN ubiquitin

Protein Analysis

232

Amino Acids

26.22

Weight (kDa)

5.77

Isoelectric Point (pI)

45.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ubiquitin PF00240 39 - 98 8.4e-06 Ubiquitin family
SAYSvFN PF10260 161 - 227 8.5e-25 Uncharacterized conserved domain (SAYSvFN)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010199)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G35360 AT2G35360 AT2G35360
fragaria_vesca FvH4_5g21620 FvH4_5g21620 FvH4_5g21620
malus_domestica MD06G1031100.v1.1
prunus_persica Prupe.5G041200_v2.0.a1 Prupe.5G041200_v2.0.a1
pyrus_communis pycom06g02590
rosa_chinensis RchiOBHm_Chr7g0209081
rosa_laevigata RLG00000003169
rosa_multiflora Rmu_co8263433.1_g000001
rosa_roxburghii Rroxscaffold_3G00249770
rosa_rugosa Rorug07G0108800 Rorug07G0108900
rosa_samantha Rh7AG243300 Rh7BG238300 Rh7CG258500 Rh7DG250300
rosa_wichuraiana Rw7G020620

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 502, 548
AciI CCGC 1 cut(s) 586
AclWI GGATC 2 cut(s) 80, 531
AcoI YGGCCR 1 cut(s) 444
AcuI CTGAAG 1 cut(s) 98
AfaI GTAC 1 cut(s) 81
AfiI CCNNNNNNNGG 4 cut(s) 259, 442, 519, 520
AgeI ACCGGT 1 cut(s) 551
AgsI TTSAA 3 cut(s) 421, 466, 622
AjnI CCWGG 2 cut(s) 592, 643
AjuI GAANNNNNNNTTGG 2 cut(s) 286, 318
AluBI AGCT 7 cut(s) 28, 98, 118, 161, 361, 424, 640
AluI AGCT 7 cut(s) 28, 98, 118, 161, 361, 424, 640
AlwI GGATC 2 cut(s) 80, 531
AoxI GGCC 4 cut(s) 91, 444, 510, 529
AsiGI ACCGGT 1 cut(s) 551
AspS9I GGNCC 4 cut(s) 84, 92, 511, 530
AvaII GGWCC 1 cut(s) 84
BalI TGGCCA 1 cut(s) 446
BanI GGYRCC 2 cut(s) 502, 548
BbsI GAAGAC 1 cut(s) 104
BccI CCATC 4 cut(s) 257, 314, 436, 665
BcgI CGANNNNNNTGC 2 cut(s) 587, 621
BciT130I CCWGG 2 cut(s) 594, 645
BfaI CTAG 1 cut(s) 578
Bme1390I CCNGG 2 cut(s) 594, 645
Bme18I GGWCC 1 cut(s) 84
BmgT120I GGNCC 4 cut(s) 84, 92, 511, 530
BmiI GGNNCC 3 cut(s) 504, 550, 649
BmrFI CCNGG 2 cut(s) 594, 645
BmsI GCATC 1 cut(s) 319
BpiI GAAGAC 1 cut(s) 104
BpuEI CTTGAG 2 cut(s) 166, 242
BsaBI GATNNNNATC 2 cut(s) 35, 246
BsaWI WCCGGW 1 cut(s) 551
Bsc4I CCNNNNNNNGG 4 cut(s) 259, 442, 519, 520
Bse118I RCCGGY 2 cut(s) 378, 551
Bse3DI GCAATG 1 cut(s) 217
Bse8I GATNNNNATC 2 cut(s) 35, 246
BseBI CCWGG 2 cut(s) 594, 645
BseGI GGATG 2 cut(s) 268, 325
BseJI GATNNNNATC 2 cut(s) 35, 246
BseLI CCNNNNNNNGG 4 cut(s) 259, 442, 519, 520
BseMI GCAATG 1 cut(s) 217
BseMII CTCAG 1 cut(s) 472
BseRI GAGGAG 2 cut(s) 38, 403
BseYI CCCAGC 1 cut(s) 94
BshFI GGCC 4 cut(s) 93, 446, 512, 531
BshNI GGYRCC 2 cut(s) 502, 548
BshTI ACCGGT 1 cut(s) 551
BsiSI CCGG 2 cut(s) 379, 552
BslFI GGGAC 1 cut(s) 689
BslI CCNNNNNNNGG 4 cut(s) 259, 442, 519, 520
BsmFI GGGAC 1 cut(s) 689
BsnI GGCC 4 cut(s) 93, 446, 512, 531
Bsp143I GATC 3 cut(s) 72, 349, 523
BspACI CCGC 1 cut(s) 586
BspANI GGCC 4 cut(s) 93, 446, 512, 531
BspCNI CTCAG 1 cut(s) 471
BspLI GGNNCC 3 cut(s) 504, 550, 649
BspPI GGATC 2 cut(s) 80, 531
BspT107I GGYRCC 2 cut(s) 502, 548
BsrDI GCAATG 1 cut(s) 217
BsrFI RCCGGY 2 cut(s) 378, 551
BssAI RCCGGY 2 cut(s) 378, 551
BssMI GATC 3 cut(s) 72, 349, 523
Bst2UI CCWGG 2 cut(s) 594, 645
Bst6I CTCTTC 3 cut(s) 15, 130, 380
BstDEI CTNAG 3 cut(s) 6, 306, 458
BstF5I GGATG 2 cut(s) 268, 325
BstKTI GATC 3 cut(s) 75, 352, 526
BstMBI GATC 3 cut(s) 72, 349, 523
BstMWI GCNNNNNNNGC 2 cut(s) 202, 509
BstNI CCWGG 2 cut(s) 594, 645
BstSCI CCNGG 2 cut(s) 592, 643
BstV2I GAAGAC 1 cut(s) 104
BstX2I RGATCY 1 cut(s) 523
BstYI RGATCY 1 cut(s) 523
BsuRI GGCC 4 cut(s) 93, 446, 512, 531
BtgZI GCGATG 1 cut(s) 612
BtsCI GGATG 2 cut(s) 268, 325
BtsIMutI CAGTG 1 cut(s) 610
Cfr10I RCCGGY 2 cut(s) 378, 551
Cfr13I GGNCC 4 cut(s) 84, 92, 511, 530
Csp6I GTAC 1 cut(s) 80
CspAI ACCGGT 1 cut(s) 551
CviAII CATG 2 cut(s) 221, 410
CviQI GTAC 1 cut(s) 80
DdeI CTNAG 3 cut(s) 6, 306, 458
DpnI GATC 3 cut(s) 74, 351, 525
DpnII GATC 3 cut(s) 72, 349, 523
EaeI YGGCCR 1 cut(s) 444
Eam1104I CTCTTC 3 cut(s) 15, 130, 380
EarI CTCTTC 3 cut(s) 15, 130, 380
Eco32I GATATC 1 cut(s) 433
Eco47I GGWCC 1 cut(s) 84
Eco57I CTGAAG 1 cut(s) 98
EcoRII CCWGG 2 cut(s) 592, 643
EcoRV GATATC 1 cut(s) 433
FaeI CATG 2 cut(s) 224, 413
FaqI GGGAC 1 cut(s) 689
FatI CATG 2 cut(s) 220, 409
FokI GGATG 2 cut(s) 275, 332
FspBI CTAG 1 cut(s) 578
GsaI CCCAGC 1 cut(s) 98
HaeIII GGCC 4 cut(s) 93, 446, 512, 531
HapII CCGG 2 cut(s) 379, 552
Hin1II CATG 2 cut(s) 224, 413
HindIII AAGCTT 1 cut(s) 422
HinfI GANTC 3 cut(s) 247, 269, 574
HpaII CCGG 2 cut(s) 379, 552
Hpy188I TCNGA 3 cut(s) 134, 573, 693
Hpy188III TCNNGA 3 cut(s) 317, 428, 668
Hpy99I CGWCG 3 cut(s) 62, 341, 344
HpyAV CCTTC 2 cut(s) 114, 312
HpyCH4IV ACGT 1 cut(s) 664
HpyCH4V TGCA 3 cut(s) 220, 608, 659
HpyF10VI GCNNNNNNNGC 2 cut(s) 202, 509
HpyF3I CTNAG 3 cut(s) 6, 306, 458
HpySE526I ACGT 1 cut(s) 664
Hsp92II CATG 2 cut(s) 224, 413
Kzo9I GATC 3 cut(s) 72, 349, 523
LmnI GCTCC 3 cut(s) 25, 103, 123
LweI GCATC 1 cut(s) 319
MaeI CTAG 1 cut(s) 578
MaeII ACGT 1 cut(s) 664
MaeIII GTNAC 1 cut(s) 174
MalI GATC 3 cut(s) 74, 351, 525
MboI GATC 3 cut(s) 72, 349, 523
MboII GAAGA 9 cut(s) 32, 104, 117, 305, 356, 397, 478, 560, 638
MflI RGATCY 1 cut(s) 523
MlsI TGGCCA 1 cut(s) 446
MluCI AATT 2 cut(s) 152, 477
MluNI TGGCCA 1 cut(s) 446
MmeI TCCRAC 1 cut(s) 277
MnlI CCTC 7 cut(s) 10, 16, 133, 186, 200, 325, 381
Mox20I TGGCCA 1 cut(s) 446
MscI TGGCCA 1 cut(s) 446
MseI TTAA 1 cut(s) 654
Msp20I TGGCCA 1 cut(s) 446
MspA1I CMGCKG 1 cut(s) 586
MspI CCGG 2 cut(s) 379, 552
MspR9I CCNGG 2 cut(s) 594, 645
MvaI CCWGG 2 cut(s) 594, 645
MwoI GCNNNNNNNGC 2 cut(s) 202, 509
NdeII GATC 3 cut(s) 72, 349, 523
NlaIII CATG 2 cut(s) 224, 413
NlaIV GGNNCC 3 cut(s) 504, 550, 649
PcsI WCGNNNNNNNCGW 1 cut(s) 336
PfeI GAWTC 3 cut(s) 247, 269, 574
PfoI TCCNGGA 1 cut(s) 643
PinAI ACCGGT 1 cut(s) 551
Psp6I CCWGG 2 cut(s) 592, 643
PspFI CCCAGC 1 cut(s) 94
PspGI CCWGG 2 cut(s) 592, 643
PspN4I GGNNCC 3 cut(s) 504, 550, 649
PspPI GGNCC 4 cut(s) 84, 92, 511, 530
PsrI GAACNNNNNNTAC 2 cut(s) 387, 419
PsuI RGATCY 1 cut(s) 523
RsaI GTAC 1 cut(s) 81
RsaNI GTAC 1 cut(s) 80
SaqAI TTAA 1 cut(s) 654
Sau3AI GATC 3 cut(s) 72, 349, 523
Sau96I GGNCC 4 cut(s) 84, 92, 511, 530
ScrFI CCNGG 2 cut(s) 594, 645
SfaNI GCATC 1 cut(s) 319
SinI GGWCC 1 cut(s) 84
SmlI CTYRAG 2 cut(s) 145, 257
SmoI CTYRAG 2 cut(s) 145, 257
Sse9I AATT 2 cut(s) 152, 477
SsiI CCGC 1 cut(s) 586
SspMI CTAG 1 cut(s) 578
StyD4I CCNGG 2 cut(s) 592, 643
TaiI ACGT 1 cut(s) 667
TaqI TCGA 1 cut(s) 614
TasI AATT 2 cut(s) 152, 477
TfiI GAWTC 3 cut(s) 247, 269, 574
Tru1I TTAA 1 cut(s) 654
Tru9I TTAA 1 cut(s) 654
TscAI CASTG 1 cut(s) 610
TspDTI ATGAA 1 cut(s) 639
TspGWI ACGGA 2 cut(s) 97, 697
TspRI CASTG 1 cut(s) 610
VpaK11BI GGWCC 1 cut(s) 84
XcmI CCANNNNNNNNNTGG 2 cut(s) 260, 524
XspI CTAG 1 cut(s) 578
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.