Rh7BG238300

Uncharacterized conserved domain (SAYSvFN)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0010199
Physical Location & Seq
Forward (+)
21062561 .. 21065919
3359 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG238300.1

Sequence Viewer

Length: 672 bp
ATGCTAATTCAATTATATGTGGGACTCCTGTCAACTGCAAATGGTAGTTGGGTCCTGTATGGGATACAATGGCACAGTTTGAATATTTGGGTTGACTTTGGTTCGGTGCTTGACTTGAGAAAATTGATAGCTGAAAAGTATCAGTTACCATTAGAGAAGTTGAGGCTTATTATGCGAGGCAATGTGTTGCATGACAGCAAAAGTGGGCAAGATGTGAATCTCCAACTCAAGGATGGCGATTCTCTTATCGTTGCTGTCAAACCAAAGCCACCTTCTAAGCATCTTCGGGATGGACTTGACGAGGACGACGACGAAGATGATCTGAAGTTTCAGCTTCCCCAATCATCAAGCCGGTGGAAGAGGAGAGTATATGCTGTTCTACATGATAAGTTGAAGCTTCCTGATATCCTTTTGATGGCCATTTTCTCTCTCAGTTTGAAGATGTGGGTAATTATCATTCTGTGGTTTATATTGGCACCTGTGGCCCACAGATGGGATCTTGGCCCTTTATATATACTTGGCACCGGTTTTGGTATCATTCTTCTGAATCTAGGACAGCGGAAGCCTGGCGATGTCAGTGCATATTCGATTTTCAATGAAGATTTTAGAGAGCTTCCAGGGACCCTTAATGCAGAACGTCTTGATGGGGACATACGAACAGGTCAGATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SAYSvFN ubiquitin

Protein Analysis

223

Amino Acids

25.4

Weight (kDa)

6.52

Isoelectric Point (pI)

38.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SAYSvFN PF10260 152 - 218 7.9e-25 Uncharacterized conserved domain (SAYSvFN)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010199)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G35360 AT2G35360 AT2G35360
fragaria_vesca FvH4_5g21620 FvH4_5g21620 FvH4_5g21620
malus_domestica MD06G1031100.v1.1
prunus_persica Prupe.5G041200_v2.0.a1 Prupe.5G041200_v2.0.a1
pyrus_communis pycom06g02590
rosa_chinensis RchiOBHm_Chr7g0209081
rosa_laevigata RLG00000003169
rosa_multiflora Rmu_co8263433.1_g000001
rosa_roxburghii Rroxscaffold_3G00249770
rosa_rugosa Rorug07G0108800 Rorug07G0108900
rosa_samantha Rh7AG243300 Rh7BG238300 Rh7CG258500 Rh7DG250300
rosa_wichuraiana Rw7G020620

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 475, 521
AciI CCGC 1 cut(s) 559
AclWI GGATC 1 cut(s) 504
AcoI YGGCCR 1 cut(s) 417
AcuI CTGAAG 1 cut(s) 344
AfiI CCNNNNNNNGG 4 cut(s) 229, 415, 492, 493
AgeI ACCGGT 1 cut(s) 524
AgsI TTSAA 5 cut(s) 11, 82, 394, 439, 595
AjnI CCWGG 2 cut(s) 565, 616
AjuI GAANNNNNNNTTGG 2 cut(s) 256, 288
AluBI AGCT 4 cut(s) 131, 334, 397, 613
AluI AGCT 4 cut(s) 131, 334, 397, 613
AlwI GGATC 1 cut(s) 504
AoxI GGCC 3 cut(s) 417, 483, 502
AsiGI ACCGGT 1 cut(s) 524
AspS9I GGNCC 4 cut(s) 52, 484, 503, 621
AvaII GGWCC 2 cut(s) 52, 621
BalI TGGCCA 1 cut(s) 419
BanI GGYRCC 2 cut(s) 475, 521
BccI CCATC 5 cut(s) 227, 284, 409, 486, 638
BcgI CGANNNNNNTGC 2 cut(s) 560, 594
BciT130I CCWGG 2 cut(s) 567, 618
BciVI GTATCC 1 cut(s) 57
BfaI CTAG 1 cut(s) 551
BfuI GTATCC 1 cut(s) 57
Bme1390I CCNGG 2 cut(s) 567, 618
Bme18I GGWCC 2 cut(s) 52, 621
BmgT120I GGNCC 4 cut(s) 52, 484, 503, 621
BmiI GGNNCC 5 cut(s) 53, 477, 523, 622, 623
BmrFI CCNGG 2 cut(s) 567, 618
BmsI GCATC 1 cut(s) 289
BoxI GACNNNNGTC 1 cut(s) 28
BpuEI CTTGAG 2 cut(s) 136, 212
BsaBI GATNNNNATC 1 cut(s) 216
BsaJI CCNNGG 1 cut(s) 617
BsaWI WCCGGW 1 cut(s) 524
Bsc4I CCNNNNNNNGG 4 cut(s) 229, 415, 492, 493
Bse118I RCCGGY 2 cut(s) 351, 524
Bse3DI GCAATG 1 cut(s) 187
Bse8I GATNNNNATC 1 cut(s) 216
BseBI CCWGG 2 cut(s) 567, 618
BseDI CCNNGG 1 cut(s) 617
BseGI GGATG 2 cut(s) 238, 295
BseJI GATNNNNATC 1 cut(s) 216
BseLI CCNNNNNNNGG 4 cut(s) 229, 415, 492, 493
BseMI GCAATG 1 cut(s) 187
BseMII CTCAG 1 cut(s) 445
BseRI GAGGAG 1 cut(s) 376
BshFI GGCC 3 cut(s) 419, 485, 504
BshNI GGYRCC 2 cut(s) 475, 521
BshTI ACCGGT 1 cut(s) 524
BsiSI CCGG 2 cut(s) 352, 525
BslFI GGGAC 3 cut(s) 36, 634, 662
BslI CCNNNNNNNGG 4 cut(s) 229, 415, 492, 493
BsmFI GGGAC 3 cut(s) 36, 634, 662
BsnI GGCC 3 cut(s) 419, 485, 504
Bsp143I GATC 2 cut(s) 319, 496
BspACI CCGC 1 cut(s) 559
BspANI GGCC 3 cut(s) 419, 485, 504
BspCNI CTCAG 1 cut(s) 444
BspLI GGNNCC 5 cut(s) 53, 477, 523, 622, 623
BspPI GGATC 1 cut(s) 504
BspT107I GGYRCC 2 cut(s) 475, 521
BsrDI GCAATG 1 cut(s) 187
BsrFI RCCGGY 2 cut(s) 351, 524
BssAI RCCGGY 2 cut(s) 351, 524
BssECI CCNNGG 1 cut(s) 617
BssMI GATC 2 cut(s) 319, 496
Bst2UI CCWGG 2 cut(s) 567, 618
Bst4CI ACNGT 1 cut(s) 77
Bst6I CTCTTC 1 cut(s) 353
BstDEI CTNAG 2 cut(s) 276, 431
BstF5I GGATG 2 cut(s) 238, 295
BstKTI GATC 2 cut(s) 322, 499
BstMBI GATC 2 cut(s) 319, 496
BstMWI GCNNNNNNNGC 2 cut(s) 172, 482
BstNI CCWGG 2 cut(s) 567, 618
BstPAI GACNNNNGTC 1 cut(s) 28
BstSCI CCNGG 2 cut(s) 565, 616
BstX2I RGATCY 1 cut(s) 496
BstYI RGATCY 1 cut(s) 496
BsuI GTATCC 1 cut(s) 57
BsuRI GGCC 3 cut(s) 419, 485, 504
BtgZI GCGATG 1 cut(s) 585
BtsCI GGATG 2 cut(s) 238, 295
BtsIMutI CAGTG 1 cut(s) 583
Cfr10I RCCGGY 2 cut(s) 351, 524
Cfr13I GGNCC 4 cut(s) 52, 484, 503, 621
CspAI ACCGGT 1 cut(s) 524
CviAII CATG 2 cut(s) 191, 383
DdeI CTNAG 2 cut(s) 276, 431
DpnI GATC 2 cut(s) 321, 498
DpnII GATC 2 cut(s) 319, 496
EaeI YGGCCR 1 cut(s) 417
Eam1104I CTCTTC 1 cut(s) 353
EarI CTCTTC 1 cut(s) 353
Eco32I GATATC 1 cut(s) 406
Eco47I GGWCC 2 cut(s) 52, 621
Eco57I CTGAAG 1 cut(s) 344
EcoO109I RGGNCCY 2 cut(s) 52, 621
EcoRII CCWGG 2 cut(s) 565, 616
EcoRV GATATC 1 cut(s) 406
FaeI CATG 2 cut(s) 194, 386
FaqI GGGAC 3 cut(s) 36, 634, 662
FatI CATG 2 cut(s) 190, 382
FokI GGATG 2 cut(s) 245, 302
FspBI CTAG 1 cut(s) 551
HaeIII GGCC 3 cut(s) 419, 485, 504
HapII CCGG 2 cut(s) 352, 525
Hin1II CATG 2 cut(s) 194, 386
HincII GTYRAC 2 cut(s) 33, 94
HindII GTYRAC 2 cut(s) 33, 94
HindIII AAGCTT 1 cut(s) 395
HinfI GANTC 4 cut(s) 24, 217, 239, 547
HpaII CCGG 2 cut(s) 352, 525
Hpy166II GTNNAC 2 cut(s) 33, 94
Hpy188I TCNGA 3 cut(s) 324, 546, 666
Hpy188III TCNNGA 3 cut(s) 287, 401, 641
Hpy8I GTNNAC 2 cut(s) 33, 94
Hpy99I CGWCG 2 cut(s) 311, 314
HpyAV CCTTC 1 cut(s) 282
HpyCH4III ACNGT 1 cut(s) 77
HpyCH4IV ACGT 1 cut(s) 637
HpyCH4V TGCA 4 cut(s) 38, 190, 581, 632
HpyF10VI GCNNNNNNNGC 2 cut(s) 172, 482
HpyF3I CTNAG 2 cut(s) 276, 431
HpySE526I ACGT 1 cut(s) 637
Hsp92II CATG 2 cut(s) 194, 386
KflI GGGWCCC 1 cut(s) 621
Kzo9I GATC 2 cut(s) 319, 496
LweI GCATC 1 cut(s) 289
MaeI CTAG 1 cut(s) 551
MaeII ACGT 1 cut(s) 637
MaeIII GTNAC 1 cut(s) 144
MalI GATC 2 cut(s) 321, 498
MboI GATC 2 cut(s) 319, 496
MboII GAAGA 6 cut(s) 275, 326, 370, 451, 533, 611
MflI RGATCY 1 cut(s) 496
MlsI TGGCCA 1 cut(s) 419
MluCI AATT 4 cut(s) 6, 11, 122, 450
MluNI TGGCCA 1 cut(s) 419
MlyI GAGTC 1 cut(s) 18
MmeI TCCRAC 1 cut(s) 247
MnlI CCTC 4 cut(s) 156, 170, 295, 354
Mox20I TGGCCA 1 cut(s) 419
MscI TGGCCA 1 cut(s) 419
MseI TTAA 1 cut(s) 627
Msp20I TGGCCA 1 cut(s) 419
MspA1I CMGCKG 1 cut(s) 559
MspI CCGG 2 cut(s) 352, 525
MspR9I CCNGG 2 cut(s) 567, 618
MvaI CCWGG 2 cut(s) 567, 618
MwoI GCNNNNNNNGC 2 cut(s) 172, 482
NdeII GATC 2 cut(s) 319, 496
NlaIII CATG 2 cut(s) 194, 386
NlaIV GGNNCC 5 cut(s) 53, 477, 523, 622, 623
PcsI WCGNNNNNNNCGW 1 cut(s) 306
PfeI GAWTC 3 cut(s) 217, 239, 547
PinAI ACCGGT 1 cut(s) 524
PleI GAGTC 1 cut(s) 18
PpsI GAGTC 1 cut(s) 18
PpuMI RGGWCCY 2 cut(s) 52, 621
PshAI GACNNNNGTC 1 cut(s) 28
Psp5II RGGWCCY 2 cut(s) 52, 621
Psp6I CCWGG 2 cut(s) 565, 616
PspGI CCWGG 2 cut(s) 565, 616
PspN4I GGNNCC 5 cut(s) 53, 477, 523, 622, 623
PspPI GGNCC 4 cut(s) 52, 484, 503, 621
PspPPI RGGWCCY 2 cut(s) 52, 621
PsrI GAACNNNNNNTAC 2 cut(s) 360, 392
PsuI RGATCY 1 cut(s) 496
SaqAI TTAA 1 cut(s) 627
Sau3AI GATC 2 cut(s) 319, 496
Sau96I GGNCC 4 cut(s) 52, 484, 503, 621
SchI GAGTC 1 cut(s) 18
ScrFI CCNGG 2 cut(s) 567, 618
SetI ASST 8 cut(s) 133, 274, 336, 399, 481, 615, 640, 664
SfaNI GCATC 1 cut(s) 289
SinI GGWCC 2 cut(s) 52, 621
SmlI CTYRAG 2 cut(s) 115, 227
SmoI CTYRAG 2 cut(s) 115, 227
Sse9I AATT 4 cut(s) 6, 11, 122, 450
SsiI CCGC 1 cut(s) 559
SspI AATATT 1 cut(s) 85
SspMI CTAG 1 cut(s) 551
StyD4I CCNGG 2 cut(s) 565, 616
TaaI ACNGT 1 cut(s) 77
TaiI ACGT 1 cut(s) 640
TaqI TCGA 1 cut(s) 587
TasI AATT 4 cut(s) 6, 11, 122, 450
TfiI GAWTC 3 cut(s) 217, 239, 547
Tru1I TTAA 1 cut(s) 627
Tru9I TTAA 1 cut(s) 627
TscAI CASTG 1 cut(s) 583
TspDTI ATGAA 1 cut(s) 612
TspRI CASTG 1 cut(s) 583
VpaK11BI GGWCC 2 cut(s) 52, 621
XcmI CCANNNNNNNNNTGG 1 cut(s) 230
XspI CTAG 1 cut(s) 551
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.