Rh7AG243300

Uncharacterized conserved domain (SAYSvFN)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0010199
Physical Location & Seq
Forward (+)
23924002 .. 23930144
6143 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG243300.1

Sequence Viewer

Length: 702 bp
ATGGCTGAGATTGTAGAGGAAGAGGAGCTGATACCAATCAATCACAGAAACAATGGCGACGACAAGGTTGGGATCGTTGTACGGACCATTGGCCCAGCTCCCCCTTCTCGTCTTCAGCTCCCCTCTTCTATCAGAGTGCTTGACTTGAGAAAATTGATAGCTGAAAAGTATCAGTTACCATTAGAGAAGTTGAGGCTTATTATGCGAGGCAATGTGTTGCATGACAGCAAAAGTGGGCAAGATGTGAATCTCCAACTCAAGGATGGCGATTCTCTTATCGTTGCTGTCAAACCAAAGCCACCTTCTAAGCATCTTCGGGATGGACTTGACGAGGACGACGACGAAGATGATCTGAAGTTTCAGCTTCCCCAATCATCAAGCCGGTGGAAGAGGAGAGTATATGCTGTTCTACATGATAAGTTGAAGCTTCCTGATATCCTTTTGATGGCCATTTTCTCTCTCAGTTTGAAGATGTGGGTAATTATCATTATGTGGTTTATATTGGCACCTGTGGCCCACCAATGGGATCTTGGCCCTTTATATATACTTGGCACCGGTTTTGGTGTCATTCTTCTGAATCTAGGACAGCGGAAGCCTGGCGATGTCAGTGCATATTCGATTTTCAATGAAGATTTTAGAGAGCTTCCAGGAACCCTTAATGCAGAACGTCTTGATGGGGACATACGGACAGGTCAGATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SAYSvFN ubiquitin

Protein Analysis

233

Amino Acids

26.35

Weight (kDa)

5.98

Isoelectric Point (pI)

45.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ubiquitin PF00240 39 - 98 8.5e-06 Ubiquitin family
SAYSvFN PF10260 162 - 228 8.6e-25 Uncharacterized conserved domain (SAYSvFN)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010199)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G35360 AT2G35360 AT2G35360
fragaria_vesca FvH4_5g21620 FvH4_5g21620 FvH4_5g21620
malus_domestica MD06G1031100.v1.1
prunus_persica Prupe.5G041200_v2.0.a1 Prupe.5G041200_v2.0.a1
pyrus_communis pycom06g02590
rosa_chinensis RchiOBHm_Chr7g0209081
rosa_laevigata RLG00000003169
rosa_multiflora Rmu_co8263433.1_g000001
rosa_roxburghii Rroxscaffold_3G00249770
rosa_rugosa Rorug07G0108800 Rorug07G0108900
rosa_samantha Rh7AG243300 Rh7BG238300 Rh7CG258500 Rh7DG250300
rosa_wichuraiana Rw7G020620

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 505, 551
AciI CCGC 1 cut(s) 589
AclWI GGATC 2 cut(s) 80, 534
AcoI YGGCCR 1 cut(s) 447
AcuI CTGAAG 2 cut(s) 98, 374
AfaI GTAC 1 cut(s) 81
AfiI CCNNNNNNNGG 4 cut(s) 259, 445, 522, 523
AgeI ACCGGT 1 cut(s) 554
AgsI TTSAA 3 cut(s) 424, 469, 625
AjnI CCWGG 2 cut(s) 595, 646
AjuI GAANNNNNNNTTGG 2 cut(s) 286, 318
AluBI AGCT 7 cut(s) 28, 98, 118, 161, 364, 427, 643
AluI AGCT 7 cut(s) 28, 98, 118, 161, 364, 427, 643
AlwI GGATC 2 cut(s) 80, 534
AoxI GGCC 4 cut(s) 91, 447, 513, 532
AsiGI ACCGGT 1 cut(s) 554
AspS9I GGNCC 4 cut(s) 84, 92, 514, 533
AvaII GGWCC 1 cut(s) 84
BalI TGGCCA 1 cut(s) 449
BanI GGYRCC 2 cut(s) 505, 551
BbsI GAAGAC 1 cut(s) 104
BccI CCATC 4 cut(s) 257, 314, 439, 668
BcgI CGANNNNNNTGC 2 cut(s) 590, 624
BciT130I CCWGG 2 cut(s) 597, 648
BfaI CTAG 1 cut(s) 581
Bme1390I CCNGG 2 cut(s) 597, 648
Bme18I GGWCC 1 cut(s) 84
BmgT120I GGNCC 4 cut(s) 84, 92, 514, 533
BmiI GGNNCC 3 cut(s) 507, 553, 652
BmrFI CCNGG 2 cut(s) 597, 648
BmsI GCATC 1 cut(s) 319
BpiI GAAGAC 1 cut(s) 104
BpuEI CTTGAG 2 cut(s) 166, 242
BsaBI GATNNNNATC 2 cut(s) 35, 246
BsaWI WCCGGW 1 cut(s) 554
Bsc4I CCNNNNNNNGG 4 cut(s) 259, 445, 522, 523
Bse118I RCCGGY 2 cut(s) 381, 554
Bse3DI GCAATG 1 cut(s) 217
Bse8I GATNNNNATC 2 cut(s) 35, 246
BseBI CCWGG 2 cut(s) 597, 648
BseGI GGATG 2 cut(s) 268, 325
BseJI GATNNNNATC 2 cut(s) 35, 246
BseLI CCNNNNNNNGG 4 cut(s) 259, 445, 522, 523
BseMI GCAATG 1 cut(s) 217
BseMII CTCAG 1 cut(s) 475
BseRI GAGGAG 2 cut(s) 38, 406
BseYI CCCAGC 1 cut(s) 94
BshFI GGCC 4 cut(s) 93, 449, 515, 534
BshNI GGYRCC 2 cut(s) 505, 551
BshTI ACCGGT 1 cut(s) 554
BsiSI CCGG 2 cut(s) 382, 555
BslFI GGGAC 1 cut(s) 692
BslI CCNNNNNNNGG 4 cut(s) 259, 445, 522, 523
BsmFI GGGAC 1 cut(s) 692
BsnI GGCC 4 cut(s) 93, 449, 515, 534
Bsp143I GATC 3 cut(s) 72, 349, 526
BspACI CCGC 1 cut(s) 589
BspANI GGCC 4 cut(s) 93, 449, 515, 534
BspCNI CTCAG 1 cut(s) 474
BspLI GGNNCC 3 cut(s) 507, 553, 652
BspPI GGATC 2 cut(s) 80, 534
BspT107I GGYRCC 2 cut(s) 505, 551
BsrDI GCAATG 1 cut(s) 217
BsrFI RCCGGY 2 cut(s) 381, 554
BssAI RCCGGY 2 cut(s) 381, 554
BssMI GATC 3 cut(s) 72, 349, 526
Bst2UI CCWGG 2 cut(s) 597, 648
Bst6I CTCTTC 3 cut(s) 15, 130, 383
BstDEI CTNAG 3 cut(s) 6, 306, 461
BstF5I GGATG 2 cut(s) 268, 325
BstKTI GATC 3 cut(s) 75, 352, 529
BstMBI GATC 3 cut(s) 72, 349, 526
BstMWI GCNNNNNNNGC 2 cut(s) 202, 512
BstNI CCWGG 2 cut(s) 597, 648
BstSCI CCNGG 2 cut(s) 595, 646
BstV2I GAAGAC 1 cut(s) 104
BstX2I RGATCY 1 cut(s) 526
BstYI RGATCY 1 cut(s) 526
BsuRI GGCC 4 cut(s) 93, 449, 515, 534
BtgZI GCGATG 1 cut(s) 615
BtsCI GGATG 2 cut(s) 268, 325
BtsIMutI CAGTG 1 cut(s) 613
Cfr10I RCCGGY 2 cut(s) 381, 554
Cfr13I GGNCC 4 cut(s) 84, 92, 514, 533
Csp6I GTAC 1 cut(s) 80
CspAI ACCGGT 1 cut(s) 554
CviAII CATG 2 cut(s) 221, 413
CviQI GTAC 1 cut(s) 80
DdeI CTNAG 3 cut(s) 6, 306, 461
DpnI GATC 3 cut(s) 74, 351, 528
DpnII GATC 3 cut(s) 72, 349, 526
EaeI YGGCCR 1 cut(s) 447
Eam1104I CTCTTC 3 cut(s) 15, 130, 383
EarI CTCTTC 3 cut(s) 15, 130, 383
Eco32I GATATC 1 cut(s) 436
Eco47I GGWCC 1 cut(s) 84
Eco57I CTGAAG 2 cut(s) 98, 374
EcoRII CCWGG 2 cut(s) 595, 646
EcoRV GATATC 1 cut(s) 436
FaeI CATG 2 cut(s) 224, 416
FaqI GGGAC 1 cut(s) 692
FatI CATG 2 cut(s) 220, 412
FokI GGATG 2 cut(s) 275, 332
FspBI CTAG 1 cut(s) 581
GsaI CCCAGC 1 cut(s) 98
HaeIII GGCC 4 cut(s) 93, 449, 515, 534
HapII CCGG 2 cut(s) 382, 555
Hin1II CATG 2 cut(s) 224, 416
HindIII AAGCTT 1 cut(s) 425
HinfI GANTC 3 cut(s) 247, 269, 577
HpaII CCGG 2 cut(s) 382, 555
Hpy188I TCNGA 4 cut(s) 134, 354, 576, 696
Hpy188III TCNNGA 3 cut(s) 317, 431, 671
Hpy99I CGWCG 3 cut(s) 62, 341, 344
HpyAV CCTTC 2 cut(s) 114, 312
HpyCH4IV ACGT 1 cut(s) 667
HpyCH4V TGCA 3 cut(s) 220, 611, 662
HpyF10VI GCNNNNNNNGC 2 cut(s) 202, 512
HpyF3I CTNAG 3 cut(s) 6, 306, 461
HpySE526I ACGT 1 cut(s) 667
Hsp92II CATG 2 cut(s) 224, 416
Kzo9I GATC 3 cut(s) 72, 349, 526
LmnI GCTCC 3 cut(s) 25, 103, 123
LweI GCATC 1 cut(s) 319
MaeI CTAG 1 cut(s) 581
MaeII ACGT 1 cut(s) 667
MaeIII GTNAC 1 cut(s) 174
MalI GATC 3 cut(s) 74, 351, 528
MboI GATC 3 cut(s) 72, 349, 526
MboII GAAGA 9 cut(s) 32, 104, 117, 305, 356, 400, 481, 563, 641
MflI RGATCY 1 cut(s) 526
MlsI TGGCCA 1 cut(s) 449
MluCI AATT 2 cut(s) 152, 480
MluNI TGGCCA 1 cut(s) 449
MmeI TCCRAC 1 cut(s) 277
MnlI CCTC 7 cut(s) 10, 16, 133, 186, 200, 325, 384
Mox20I TGGCCA 1 cut(s) 449
MscI TGGCCA 1 cut(s) 449
MseI TTAA 1 cut(s) 657
Msp20I TGGCCA 1 cut(s) 449
MspA1I CMGCKG 1 cut(s) 589
MspI CCGG 2 cut(s) 382, 555
MspR9I CCNGG 2 cut(s) 597, 648
MvaI CCWGG 2 cut(s) 597, 648
MwoI GCNNNNNNNGC 2 cut(s) 202, 512
NdeII GATC 3 cut(s) 72, 349, 526
NlaIII CATG 2 cut(s) 224, 416
NlaIV GGNNCC 3 cut(s) 507, 553, 652
PcsI WCGNNNNNNNCGW 1 cut(s) 336
PfeI GAWTC 3 cut(s) 247, 269, 577
PfoI TCCNGGA 1 cut(s) 646
PinAI ACCGGT 1 cut(s) 554
Psp6I CCWGG 2 cut(s) 595, 646
PspFI CCCAGC 1 cut(s) 94
PspGI CCWGG 2 cut(s) 595, 646
PspN4I GGNNCC 3 cut(s) 507, 553, 652
PspPI GGNCC 4 cut(s) 84, 92, 514, 533
PsrI GAACNNNNNNTAC 2 cut(s) 390, 422
PsuI RGATCY 1 cut(s) 526
RsaI GTAC 1 cut(s) 81
RsaNI GTAC 1 cut(s) 80
SaqAI TTAA 1 cut(s) 657
Sau3AI GATC 3 cut(s) 72, 349, 526
Sau96I GGNCC 4 cut(s) 84, 92, 514, 533
ScrFI CCNGG 2 cut(s) 597, 648
SfaNI GCATC 1 cut(s) 319
SinI GGWCC 1 cut(s) 84
SmlI CTYRAG 2 cut(s) 145, 257
SmoI CTYRAG 2 cut(s) 145, 257
Sse9I AATT 2 cut(s) 152, 480
SsiI CCGC 1 cut(s) 589
SspMI CTAG 1 cut(s) 581
StyD4I CCNGG 2 cut(s) 595, 646
TaiI ACGT 1 cut(s) 670
TaqI TCGA 1 cut(s) 617
TasI AATT 2 cut(s) 152, 480
TfiI GAWTC 3 cut(s) 247, 269, 577
Tru1I TTAA 1 cut(s) 657
Tru9I TTAA 1 cut(s) 657
TscAI CASTG 1 cut(s) 613
TspDTI ATGAA 1 cut(s) 642
TspGWI ACGGA 2 cut(s) 97, 700
TspRI CASTG 1 cut(s) 613
VpaK11BI GGWCC 1 cut(s) 84
XcmI CCANNNNNNNNNTGG 2 cut(s) 260, 527
XspI CTAG 1 cut(s) 581
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.