Rh7DG250300

Uncharacterized conserved domain (SAYSvFN)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0010199
Physical Location & Seq
Forward (+)
25933814 .. 25940699
6886 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG250300.1

Sequence Viewer

Length: 501 bp
ATGCGAGGCAATGTGTTGCATGACAGCAAAAGTGGGCAAGATGTGAATCTCCAACTCAAGGATGGCGATTCTCTTATCGTTGCTGTCAAACCAAAGCCACCTTCTAAGCATCTTCGGGATGGACTTGACGAGGACGACGACGAAGATGATCTGAAGTTTCAGCTTCCCCAATCATCAAGCCGGTGGAAGAGGAGAGTATATGCTGTTCTACATGATAAGTTGAAGCTTCCTGATATCCTTTTGATGGCCATTTTCTCTCTCAGTTTGAAGATGTGGGTAATTATCATTATGTGGTTTATATTGGCACCTGTGGCCCACAGATGGGATCTTGGCCCTTTATATATACTTGGCACCGGTTTTGGTGTCATTCTTCTGAATCTAGGACAGCGGAAGCCTGGCGATGTCAGTGCATATTCGATTTTCAATGAAGATTTTAGAGAGCTTCCAGGGACCCTTAATGCAGAACGTCTTGATGGGGACATACGGACAGGTCAGATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SAYSvFN ubiquitin

Protein Analysis

166

Amino Acids

18.79

Weight (kDa)

6.06

Isoelectric Point (pI)

44.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SAYSvFN PF10260 95 - 161 4.1e-25 Uncharacterized conserved domain (SAYSvFN)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010199)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G35360 AT2G35360 AT2G35360
fragaria_vesca FvH4_5g21620 FvH4_5g21620 FvH4_5g21620
malus_domestica MD06G1031100.v1.1
prunus_persica Prupe.5G041200_v2.0.a1 Prupe.5G041200_v2.0.a1
pyrus_communis pycom06g02590
rosa_chinensis RchiOBHm_Chr7g0209081
rosa_laevigata RLG00000003169
rosa_multiflora Rmu_co8263433.1_g000001
rosa_roxburghii Rroxscaffold_3G00249770
rosa_rugosa Rorug07G0108800 Rorug07G0108900
rosa_samantha Rh7AG243300 Rh7BG238300 Rh7CG258500 Rh7DG250300
rosa_wichuraiana Rw7G020620

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 304, 350
AciI CCGC 1 cut(s) 388
AclWI GGATC 1 cut(s) 333
AcoI YGGCCR 1 cut(s) 246
AcuI CTGAAG 1 cut(s) 173
AfiI CCNNNNNNNGG 4 cut(s) 58, 244, 321, 322
AgeI ACCGGT 1 cut(s) 353
AgsI TTSAA 3 cut(s) 223, 268, 424
AjnI CCWGG 2 cut(s) 394, 445
AjuI GAANNNNNNNTTGG 2 cut(s) 85, 117
AluBI AGCT 3 cut(s) 163, 226, 442
AluI AGCT 3 cut(s) 163, 226, 442
AlwI GGATC 1 cut(s) 333
AoxI GGCC 3 cut(s) 246, 312, 331
AsiGI ACCGGT 1 cut(s) 353
AspS9I GGNCC 3 cut(s) 313, 332, 450
AvaII GGWCC 1 cut(s) 450
BalI TGGCCA 1 cut(s) 248
BanI GGYRCC 2 cut(s) 304, 350
BccI CCATC 5 cut(s) 56, 113, 238, 315, 467
BcgI CGANNNNNNTGC 2 cut(s) 389, 423
BciT130I CCWGG 2 cut(s) 396, 447
BfaI CTAG 1 cut(s) 380
Bme1390I CCNGG 2 cut(s) 396, 447
Bme18I GGWCC 1 cut(s) 450
BmgT120I GGNCC 3 cut(s) 313, 332, 450
BmiI GGNNCC 4 cut(s) 306, 352, 451, 452
BmrFI CCNGG 2 cut(s) 396, 447
BmsI GCATC 1 cut(s) 118
BpuEI CTTGAG 1 cut(s) 41
BsaBI GATNNNNATC 1 cut(s) 45
BsaJI CCNNGG 1 cut(s) 446
BsaWI WCCGGW 1 cut(s) 353
Bsc4I CCNNNNNNNGG 4 cut(s) 58, 244, 321, 322
Bse118I RCCGGY 2 cut(s) 180, 353
Bse3DI GCAATG 1 cut(s) 16
Bse8I GATNNNNATC 1 cut(s) 45
BseBI CCWGG 2 cut(s) 396, 447
BseDI CCNNGG 1 cut(s) 446
BseGI GGATG 2 cut(s) 67, 124
BseJI GATNNNNATC 1 cut(s) 45
BseLI CCNNNNNNNGG 4 cut(s) 58, 244, 321, 322
BseMI GCAATG 1 cut(s) 16
BseMII CTCAG 1 cut(s) 274
BseRI GAGGAG 1 cut(s) 205
BshFI GGCC 3 cut(s) 248, 314, 333
BshNI GGYRCC 2 cut(s) 304, 350
BshTI ACCGGT 1 cut(s) 353
BsiSI CCGG 2 cut(s) 181, 354
BslFI GGGAC 2 cut(s) 463, 491
BslI CCNNNNNNNGG 4 cut(s) 58, 244, 321, 322
BsmFI GGGAC 2 cut(s) 463, 491
BsnI GGCC 3 cut(s) 248, 314, 333
Bsp143I GATC 2 cut(s) 148, 325
BspACI CCGC 1 cut(s) 388
BspANI GGCC 3 cut(s) 248, 314, 333
BspCNI CTCAG 1 cut(s) 273
BspLI GGNNCC 4 cut(s) 306, 352, 451, 452
BspPI GGATC 1 cut(s) 333
BspT107I GGYRCC 2 cut(s) 304, 350
BsrDI GCAATG 1 cut(s) 16
BsrFI RCCGGY 2 cut(s) 180, 353
BssAI RCCGGY 2 cut(s) 180, 353
BssECI CCNNGG 1 cut(s) 446
BssMI GATC 2 cut(s) 148, 325
Bst2UI CCWGG 2 cut(s) 396, 447
Bst6I CTCTTC 1 cut(s) 182
BstDEI CTNAG 2 cut(s) 105, 260
BstF5I GGATG 2 cut(s) 67, 124
BstKTI GATC 2 cut(s) 151, 328
BstMBI GATC 2 cut(s) 148, 325
BstMWI GCNNNNNNNGC 1 cut(s) 311
BstNI CCWGG 2 cut(s) 396, 447
BstSCI CCNGG 2 cut(s) 394, 445
BstX2I RGATCY 1 cut(s) 325
BstYI RGATCY 1 cut(s) 325
BsuRI GGCC 3 cut(s) 248, 314, 333
BtgZI GCGATG 1 cut(s) 414
BtsCI GGATG 2 cut(s) 67, 124
BtsIMutI CAGTG 1 cut(s) 412
Cfr10I RCCGGY 2 cut(s) 180, 353
Cfr13I GGNCC 3 cut(s) 313, 332, 450
CspAI ACCGGT 1 cut(s) 353
CviAII CATG 2 cut(s) 20, 212
CviJI RGCY 9 cut(s) 97, 163, 180, 226, 248, 314, 333, 394, 442
CviKI_1 RGCY 9 cut(s) 97, 163, 180, 226, 248, 314, 333, 394, 442
DdeI CTNAG 2 cut(s) 105, 260
DpnI GATC 2 cut(s) 150, 327
DpnII GATC 2 cut(s) 148, 325
EaeI YGGCCR 1 cut(s) 246
Eam1104I CTCTTC 1 cut(s) 182
EarI CTCTTC 1 cut(s) 182
Eco32I GATATC 1 cut(s) 235
Eco47I GGWCC 1 cut(s) 450
Eco57I CTGAAG 1 cut(s) 173
EcoO109I RGGNCCY 1 cut(s) 450
EcoRII CCWGG 2 cut(s) 394, 445
EcoRV GATATC 1 cut(s) 235
FaeI CATG 2 cut(s) 23, 215
FaqI GGGAC 2 cut(s) 463, 491
FatI CATG 2 cut(s) 19, 211
FokI GGATG 2 cut(s) 74, 131
FspBI CTAG 1 cut(s) 380
HaeIII GGCC 3 cut(s) 248, 314, 333
HapII CCGG 2 cut(s) 181, 354
Hin1II CATG 2 cut(s) 23, 215
HindIII AAGCTT 1 cut(s) 224
HinfI GANTC 3 cut(s) 46, 68, 376
HpaII CCGG 2 cut(s) 181, 354
Hpy188I TCNGA 3 cut(s) 153, 375, 495
Hpy188III TCNNGA 3 cut(s) 116, 230, 470
Hpy99I CGWCG 2 cut(s) 140, 143
HpyAV CCTTC 1 cut(s) 111
HpyCH4IV ACGT 1 cut(s) 466
HpyCH4V TGCA 3 cut(s) 19, 410, 461
HpyF10VI GCNNNNNNNGC 1 cut(s) 311
HpyF3I CTNAG 2 cut(s) 105, 260
HpySE526I ACGT 1 cut(s) 466
Hsp92II CATG 2 cut(s) 23, 215
KflI GGGWCCC 1 cut(s) 450
Kzo9I GATC 2 cut(s) 148, 325
LpnPI CCDG 9 cut(s) 194, 243, 321, 367, 381, 408, 432, 459, 474
LweI GCATC 1 cut(s) 118
MaeI CTAG 1 cut(s) 380
MaeII ACGT 1 cut(s) 466
MalI GATC 2 cut(s) 150, 327
MboI GATC 2 cut(s) 148, 325
MboII GAAGA 6 cut(s) 104, 155, 199, 280, 362, 440
MflI RGATCY 1 cut(s) 325
MlsI TGGCCA 1 cut(s) 248
MluCI AATT 1 cut(s) 279
MluNI TGGCCA 1 cut(s) 248
MmeI TCCRAC 1 cut(s) 76
MnlI CCTC 2 cut(s) 124, 183
Mox20I TGGCCA 1 cut(s) 248
MscI TGGCCA 1 cut(s) 248
MseI TTAA 1 cut(s) 456
Msp20I TGGCCA 1 cut(s) 248
MspA1I CMGCKG 1 cut(s) 388
MspI CCGG 2 cut(s) 181, 354
MspR9I CCNGG 2 cut(s) 396, 447
MvaI CCWGG 2 cut(s) 396, 447
MwoI GCNNNNNNNGC 1 cut(s) 311
NdeII GATC 2 cut(s) 148, 325
NlaIII CATG 2 cut(s) 23, 215
NlaIV GGNNCC 4 cut(s) 306, 352, 451, 452
PcsI WCGNNNNNNNCGW 1 cut(s) 135
PfeI GAWTC 3 cut(s) 46, 68, 376
PinAI ACCGGT 1 cut(s) 353
PpuMI RGGWCCY 1 cut(s) 450
Psp5II RGGWCCY 1 cut(s) 450
Psp6I CCWGG 2 cut(s) 394, 445
PspGI CCWGG 2 cut(s) 394, 445
PspN4I GGNNCC 4 cut(s) 306, 352, 451, 452
PspPI GGNCC 3 cut(s) 313, 332, 450
PspPPI RGGWCCY 1 cut(s) 450
PsrI GAACNNNNNNTAC 2 cut(s) 189, 221
PsuI RGATCY 1 cut(s) 325
SaqAI TTAA 1 cut(s) 456
Sau3AI GATC 2 cut(s) 148, 325
Sau96I GGNCC 3 cut(s) 313, 332, 450
ScrFI CCNGG 2 cut(s) 396, 447
SetI ASST 7 cut(s) 103, 165, 228, 310, 444, 469, 493
SfaNI GCATC 1 cut(s) 118
SinI GGWCC 1 cut(s) 450
SmlI CTYRAG 1 cut(s) 56
SmoI CTYRAG 1 cut(s) 56
Sse9I AATT 1 cut(s) 279
SsiI CCGC 1 cut(s) 388
SspMI CTAG 1 cut(s) 380
StyD4I CCNGG 2 cut(s) 394, 445
TaiI ACGT 1 cut(s) 469
TaqI TCGA 1 cut(s) 416
TasI AATT 1 cut(s) 279
TfiI GAWTC 3 cut(s) 46, 68, 376
Tru1I TTAA 1 cut(s) 456
Tru9I TTAA 1 cut(s) 456
TscAI CASTG 1 cut(s) 412
TspDTI ATGAA 1 cut(s) 441
TspGWI ACGGA 1 cut(s) 499
TspRI CASTG 1 cut(s) 412
VpaK11BI GGWCC 1 cut(s) 450
XcmI CCANNNNNNNNNTGG 1 cut(s) 59
XspI CTAG 1 cut(s) 380
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.