Rmu_co8263433.1_g000001

Uncharacterized conserved domain (SAYSvFN)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8263433.1
OG0010199
Physical Location & Seq
Reverse (-)
1 .. 813
813 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8263433.1_g000001.1.cds

Sequence Viewer

Length: 412 bp
tcttagtcaagactgcagttttggcattagtagtggcagtgaatttattatcttatttttgttctttgctagattctcttatcgttgctgtcaaaccaaagccaccttctaagcatattcgggatggacttgatgaggacgacgacgaagatgatctgaagtttcagcttccccaatcatcaagccggtggaagaggagagtatatgctgttctacatgataagttgaagcttcctgatatccttttgatggccattttctctctcagtttgaagatgtgggtaattatcattatgtggtttatattggcacctgtggcccacagatgggatcttggccctttatatatacttggcaccggttttggtgtcattcttctgaatctaggacagcggaagcctggcgatgtcag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SAYSvFN ubiquitin

Protein Analysis

136

Amino Acids

15.35

Weight (kDa)

8.75

Isoelectric Point (pI)

50.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010199)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G35360 AT2G35360 AT2G35360
fragaria_vesca FvH4_5g21620 FvH4_5g21620 FvH4_5g21620
malus_domestica MD06G1031100.v1.1
prunus_persica Prupe.5G041200_v2.0.a1 Prupe.5G041200_v2.0.a1
pyrus_communis pycom06g02590
rosa_chinensis RchiOBHm_Chr7g0209081
rosa_laevigata RLG00000003169
rosa_multiflora Rmu_co8263433.1_g000001
rosa_roxburghii Rroxscaffold_3G00249770
rosa_rugosa Rorug07G0108800 Rorug07G0108900
rosa_samantha Rh7AG243300 Rh7BG238300 Rh7CG258500 Rh7DG250300
rosa_wichuraiana Rw7G020620

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 309, 355
AciI CCGC 1 cut(s) 393
AclWI GGATC 1 cut(s) 338
AcoI YGGCCR 1 cut(s) 251
AcsI RAATTY 1 cut(s) 42
AcuI CTGAAG 1 cut(s) 178
AfiI CCNNNNNNNGG 3 cut(s) 249, 326, 327
AgeI ACCGGT 1 cut(s) 358
AgsI TTSAA 2 cut(s) 228, 273
AjnI CCWGG 1 cut(s) 399
AjuI GAANNNNNNNTTGG 2 cut(s) 90, 122
AluBI AGCT 2 cut(s) 168, 231
AluI AGCT 2 cut(s) 168, 231
AlwI GGATC 1 cut(s) 338
AoxI GGCC 3 cut(s) 251, 317, 336
ApoI RAATTY 1 cut(s) 42
ArsI GACNNNNNNTTYG 1 cut(s) 35
AsiGI ACCGGT 1 cut(s) 358
AspS9I GGNCC 2 cut(s) 318, 337
BalI TGGCCA 1 cut(s) 253
BanI GGYRCC 2 cut(s) 309, 355
BccI CCATC 3 cut(s) 118, 243, 320
BciT130I CCWGG 1 cut(s) 401
BfaI CTAG 2 cut(s) 70, 385
BfmI CTRYAG 1 cut(s) 14
Bme1390I CCNGG 1 cut(s) 401
BmgT120I GGNCC 2 cut(s) 318, 337
BmiI GGNNCC 2 cut(s) 311, 357
BmrFI CCNGG 1 cut(s) 401
BsaWI WCCGGW 1 cut(s) 358
Bsc4I CCNNNNNNNGG 3 cut(s) 249, 326, 327
Bse118I RCCGGY 2 cut(s) 185, 358
BseBI CCWGG 1 cut(s) 401
BseGI GGATG 1 cut(s) 129
BseLI CCNNNNNNNGG 3 cut(s) 249, 326, 327
BseMII CTCAG 1 cut(s) 279
BseRI GAGGAG 1 cut(s) 210
BshFI GGCC 3 cut(s) 253, 319, 338
BshNI GGYRCC 2 cut(s) 309, 355
BshTI ACCGGT 1 cut(s) 358
BsiSI CCGG 2 cut(s) 186, 359
BslI CCNNNNNNNGG 3 cut(s) 249, 326, 327
BsnI GGCC 3 cut(s) 253, 319, 338
Bsp143I GATC 2 cut(s) 153, 330
BspACI CCGC 1 cut(s) 393
BspANI GGCC 3 cut(s) 253, 319, 338
BspCNI CTCAG 1 cut(s) 278
BspLI GGNNCC 2 cut(s) 311, 357
BspMAI CTGCAG 1 cut(s) 18
BspPI GGATC 1 cut(s) 338
BspT107I GGYRCC 2 cut(s) 309, 355
BsrFI RCCGGY 2 cut(s) 185, 358
BssAI RCCGGY 2 cut(s) 185, 358
BssMI GATC 2 cut(s) 153, 330
Bst2UI CCWGG 1 cut(s) 401
Bst6I CTCTTC 1 cut(s) 187
BstDEI CTNAG 3 cut(s) 3, 110, 265
BstF5I GGATG 1 cut(s) 129
BstKTI GATC 2 cut(s) 156, 333
BstMBI GATC 2 cut(s) 153, 330
BstMWI GCNNNNNNNGC 2 cut(s) 22, 316
BstNI CCWGG 1 cut(s) 401
BstSCI CCNGG 1 cut(s) 399
BstSFI CTRYAG 1 cut(s) 14
BstX2I RGATCY 1 cut(s) 330
BstYI RGATCY 1 cut(s) 330
BsuRI GGCC 3 cut(s) 253, 319, 338
BtsCI GGATG 1 cut(s) 129
BtsI GCAGTG 1 cut(s) 44
BtsIMutI CAGTG 1 cut(s) 44
Cfr10I RCCGGY 2 cut(s) 185, 358
Cfr13I GGNCC 2 cut(s) 318, 337
CspAI ACCGGT 1 cut(s) 358
CviAII CATG 1 cut(s) 217
CviJI RGCY 8 cut(s) 102, 168, 185, 231, 253, 319, 338, 399
CviKI_1 RGCY 8 cut(s) 102, 168, 185, 231, 253, 319, 338, 399
DdeI CTNAG 3 cut(s) 3, 110, 265
DpnI GATC 2 cut(s) 155, 332
DpnII GATC 2 cut(s) 153, 330
EaeI YGGCCR 1 cut(s) 251
Eam1104I CTCTTC 1 cut(s) 187
EarI CTCTTC 1 cut(s) 187
Eco32I GATATC 1 cut(s) 240
Eco57I CTGAAG 1 cut(s) 178
EcoRII CCWGG 1 cut(s) 399
EcoRV GATATC 1 cut(s) 240
FaeI CATG 1 cut(s) 220
FaiI YATR 9 cut(s) 116, 204, 206, 218, 295, 304, 345, 347, 349
FatI CATG 1 cut(s) 216
FokI GGATG 1 cut(s) 136
FspBI CTAG 2 cut(s) 70, 385
HaeIII GGCC 3 cut(s) 253, 319, 338
HapII CCGG 2 cut(s) 186, 359
Hin1II CATG 1 cut(s) 220
HindIII AAGCTT 1 cut(s) 229
HinfI GANTC 2 cut(s) 73, 381
HpaII CCGG 2 cut(s) 186, 359
Hpy188I TCNGA 2 cut(s) 158, 380
Hpy188III TCNNGA 3 cut(s) 9, 121, 235
Hpy99I CGWCG 2 cut(s) 145, 148
HpyAV CCTTC 1 cut(s) 116
HpyCH4V TGCA 1 cut(s) 16
HpyF10VI GCNNNNNNNGC 2 cut(s) 22, 316
HpyF3I CTNAG 3 cut(s) 3, 110, 265
Hsp92II CATG 1 cut(s) 220
Kzo9I GATC 2 cut(s) 153, 330
LpnPI CCDG 5 cut(s) 199, 248, 326, 372, 386
MaeI CTAG 2 cut(s) 70, 385
MalI GATC 2 cut(s) 155, 332
MboI GATC 2 cut(s) 153, 330
MboII GAAGA 4 cut(s) 160, 204, 285, 367
MflI RGATCY 1 cut(s) 330
MlsI TGGCCA 1 cut(s) 253
MluCI AATT 2 cut(s) 42, 284
MluNI TGGCCA 1 cut(s) 253
MnlI CCTC 2 cut(s) 129, 188
Mox20I TGGCCA 1 cut(s) 253
MscI TGGCCA 1 cut(s) 253
Msp20I TGGCCA 1 cut(s) 253
MspA1I CMGCKG 1 cut(s) 393
MspI CCGG 2 cut(s) 186, 359
MspR9I CCNGG 1 cut(s) 401
MvaI CCWGG 1 cut(s) 401
MwoI GCNNNNNNNGC 2 cut(s) 22, 316
NdeII GATC 2 cut(s) 153, 330
NlaIII CATG 1 cut(s) 220
NlaIV GGNNCC 2 cut(s) 311, 357
PfeI GAWTC 2 cut(s) 73, 381
PinAI ACCGGT 1 cut(s) 358
Psp6I CCWGG 1 cut(s) 399
PspGI CCWGG 1 cut(s) 399
PspN4I GGNNCC 2 cut(s) 311, 357
PspPI GGNCC 2 cut(s) 318, 337
PsrI GAACNNNNNNTAC 2 cut(s) 194, 226
PstI CTGCAG 1 cut(s) 18
PsuI RGATCY 1 cut(s) 330
Sau3AI GATC 2 cut(s) 153, 330
Sau96I GGNCC 2 cut(s) 318, 337
ScrFI CCNGG 1 cut(s) 401
SetI ASST 4 cut(s) 108, 170, 233, 315
SfcI CTRYAG 1 cut(s) 14
Sse9I AATT 2 cut(s) 42, 284
SsiI CCGC 1 cut(s) 393
SspMI CTAG 2 cut(s) 70, 385
StyD4I CCNGG 1 cut(s) 399
TasI AATT 2 cut(s) 42, 284
TfiI GAWTC 2 cut(s) 73, 381
TscAI CASTG 1 cut(s) 44
TspRI CASTG 1 cut(s) 44
XapI RAATTY 1 cut(s) 42
XspI CTAG 2 cut(s) 70, 385
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.