Rh7CG258500

Uncharacterized conserved domain (SAYSvFN)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0010199
Physical Location & Seq
Forward (+)
25160094 .. 25166919
6826 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG258500.1

Sequence Viewer

Length: 531 bp
ATGGGCCAATGTAGAGACAGCAATTTCTTAGTCAAGACTGCAGTTTTGGCATTAGTAGTGGCAGTGAATTTATTATCATATTTTTGTTCTTTGCTAGATTCTCTTATCGTTGCTGTCAAACCAAAGCCACCTTCTAAGCATCTTCGGGATGGACTTGACGAGGACGACGACGAAGATGATCTGAAGTTTCAGCTTCCCCAATCATCAAGCCGGTGGAAGAGGAGAGTATATGCTGTTCTACATGATAAGTTGAAGCTTCCTGATATCCTTTTGATGGCCATTTTCTCTCTCAGTTTGAAGATGTGGGTAATTATCATTATGTGGTTTATATTGGCACCTGTGGCCCACAGATGGGATCTTGGCCCTTTATATATACTTGGCACCGGTTTTGGTGTCATTCTTCTGAATCTAGGACAGCGGAAGCCTGGCGATGTCAGTGCATATTCGATTTTCAATGAAGATTTTAGAGAGCTTCCAGGGACCCTTAATGCAGAACGTCTTGATGGGGACATACGGACAGGTCAGATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SAYSvFN ubiquitin

Protein Analysis

176

Amino Acids

19.87

Weight (kDa)

6.28

Isoelectric Point (pI)

40.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SAYSvFN PF10260 105 - 171 4.7e-25 Uncharacterized conserved domain (SAYSvFN)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0010199)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G35360 AT2G35360 AT2G35360
fragaria_vesca FvH4_5g21620 FvH4_5g21620 FvH4_5g21620
malus_domestica MD06G1031100.v1.1
prunus_persica Prupe.5G041200_v2.0.a1 Prupe.5G041200_v2.0.a1
pyrus_communis pycom06g02590
rosa_chinensis RchiOBHm_Chr7g0209081
rosa_laevigata RLG00000003169
rosa_multiflora Rmu_co8263433.1_g000001
rosa_roxburghii Rroxscaffold_3G00249770
rosa_rugosa Rorug07G0108800 Rorug07G0108900
rosa_samantha Rh7AG243300 Rh7BG238300 Rh7CG258500 Rh7DG250300
rosa_wichuraiana Rw7G020620

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 334, 380
AciI CCGC 1 cut(s) 418
AclWI GGATC 1 cut(s) 363
AcoI YGGCCR 1 cut(s) 276
AcsI RAATTY 1 cut(s) 67
AcuI CTGAAG 1 cut(s) 203
AfiI CCNNNNNNNGG 3 cut(s) 274, 351, 352
AgeI ACCGGT 1 cut(s) 383
AgsI TTSAA 3 cut(s) 253, 298, 454
AjnI CCWGG 2 cut(s) 424, 475
AjuI GAANNNNNNNTTGG 2 cut(s) 115, 147
AluBI AGCT 3 cut(s) 193, 256, 472
AluI AGCT 3 cut(s) 193, 256, 472
Alw26I GTCTC 1 cut(s) 9
AlwI GGATC 1 cut(s) 363
AoxI GGCC 4 cut(s) 4, 276, 342, 361
ApoI RAATTY 1 cut(s) 67
ArsI GACNNNNNNTTYG 2 cut(s) 28, 60
AsiGI ACCGGT 1 cut(s) 383
AspS9I GGNCC 4 cut(s) 4, 343, 362, 480
AvaII GGWCC 1 cut(s) 480
BalI TGGCCA 1 cut(s) 278
BanI GGYRCC 2 cut(s) 334, 380
BccI CCATC 4 cut(s) 143, 268, 345, 497
BcgI CGANNNNNNTGC 2 cut(s) 419, 453
BciT130I CCWGG 2 cut(s) 426, 477
BcoDI GTCTC 1 cut(s) 9
BfaI CTAG 2 cut(s) 95, 410
BfmI CTRYAG 1 cut(s) 39
Bme1390I CCNGG 2 cut(s) 426, 477
Bme18I GGWCC 1 cut(s) 480
BmgT120I GGNCC 4 cut(s) 4, 343, 362, 480
BmiI GGNNCC 4 cut(s) 336, 382, 481, 482
BmrFI CCNGG 2 cut(s) 426, 477
BmsI GCATC 1 cut(s) 148
BsaJI CCNNGG 1 cut(s) 476
BsaWI WCCGGW 1 cut(s) 383
Bsc4I CCNNNNNNNGG 3 cut(s) 274, 351, 352
Bse118I RCCGGY 2 cut(s) 210, 383
BseBI CCWGG 2 cut(s) 426, 477
BseDI CCNNGG 1 cut(s) 476
BseGI GGATG 1 cut(s) 154
BseLI CCNNNNNNNGG 3 cut(s) 274, 351, 352
BseMII CTCAG 1 cut(s) 304
BseRI GAGGAG 1 cut(s) 235
BshFI GGCC 4 cut(s) 6, 278, 344, 363
BshNI GGYRCC 2 cut(s) 334, 380
BshTI ACCGGT 1 cut(s) 383
BsiSI CCGG 2 cut(s) 211, 384
BslFI GGGAC 2 cut(s) 493, 521
BslI CCNNNNNNNGG 3 cut(s) 274, 351, 352
BsmAI GTCTC 1 cut(s) 9
BsmFI GGGAC 2 cut(s) 493, 521
BsnI GGCC 4 cut(s) 6, 278, 344, 363
Bsp143I GATC 2 cut(s) 178, 355
BspACI CCGC 1 cut(s) 418
BspANI GGCC 4 cut(s) 6, 278, 344, 363
BspCNI CTCAG 1 cut(s) 303
BspLI GGNNCC 4 cut(s) 336, 382, 481, 482
BspMAI CTGCAG 1 cut(s) 43
BspPI GGATC 1 cut(s) 363
BspT107I GGYRCC 2 cut(s) 334, 380
BsrFI RCCGGY 2 cut(s) 210, 383
BssAI RCCGGY 2 cut(s) 210, 383
BssECI CCNNGG 1 cut(s) 476
BssMI GATC 2 cut(s) 178, 355
Bst2UI CCWGG 2 cut(s) 426, 477
Bst6I CTCTTC 1 cut(s) 212
BstDEI CTNAG 3 cut(s) 28, 135, 290
BstF5I GGATG 1 cut(s) 154
BstKTI GATC 2 cut(s) 181, 358
BstMAI GTCTC 1 cut(s) 9
BstMBI GATC 2 cut(s) 178, 355
BstMWI GCNNNNNNNGC 2 cut(s) 47, 341
BstNI CCWGG 2 cut(s) 426, 477
BstSCI CCNGG 2 cut(s) 424, 475
BstSFI CTRYAG 1 cut(s) 39
BstX2I RGATCY 1 cut(s) 355
BstYI RGATCY 1 cut(s) 355
BsuRI GGCC 4 cut(s) 6, 278, 344, 363
BtgZI GCGATG 1 cut(s) 444
BtsCI GGATG 1 cut(s) 154
BtsI GCAGTG 1 cut(s) 69
BtsIMutI CAGTG 2 cut(s) 69, 442
Cfr10I RCCGGY 2 cut(s) 210, 383
Cfr13I GGNCC 4 cut(s) 4, 343, 362, 480
CspAI ACCGGT 1 cut(s) 383
CviAII CATG 1 cut(s) 242
DdeI CTNAG 3 cut(s) 28, 135, 290
DpnI GATC 2 cut(s) 180, 357
DpnII GATC 2 cut(s) 178, 355
EaeI YGGCCR 1 cut(s) 276
Eam1104I CTCTTC 1 cut(s) 212
EarI CTCTTC 1 cut(s) 212
Eco32I GATATC 1 cut(s) 265
Eco47I GGWCC 1 cut(s) 480
Eco57I CTGAAG 1 cut(s) 203
EcoO109I RGGNCCY 1 cut(s) 480
EcoRII CCWGG 2 cut(s) 424, 475
EcoRV GATATC 1 cut(s) 265
FaeI CATG 1 cut(s) 245
FaqI GGGAC 2 cut(s) 493, 521
FatI CATG 1 cut(s) 241
FokI GGATG 1 cut(s) 161
FspBI CTAG 2 cut(s) 95, 410
HaeIII GGCC 4 cut(s) 6, 278, 344, 363
HapII CCGG 2 cut(s) 211, 384
Hin1II CATG 1 cut(s) 245
HindIII AAGCTT 1 cut(s) 254
HinfI GANTC 2 cut(s) 98, 406
HpaII CCGG 2 cut(s) 211, 384
Hpy188I TCNGA 3 cut(s) 183, 405, 525
Hpy188III TCNNGA 4 cut(s) 34, 146, 260, 500
Hpy99I CGWCG 2 cut(s) 170, 173
HpyAV CCTTC 1 cut(s) 141
HpyCH4IV ACGT 1 cut(s) 496
HpyCH4V TGCA 3 cut(s) 41, 440, 491
HpyF10VI GCNNNNNNNGC 2 cut(s) 47, 341
HpyF3I CTNAG 3 cut(s) 28, 135, 290
HpySE526I ACGT 1 cut(s) 496
Hsp92II CATG 1 cut(s) 245
KflI GGGWCCC 1 cut(s) 480
Kzo9I GATC 2 cut(s) 178, 355
LpnPI CCDG 9 cut(s) 224, 273, 351, 397, 411, 438, 462, 489, 504
LweI GCATC 1 cut(s) 148
MaeI CTAG 2 cut(s) 95, 410
MaeII ACGT 1 cut(s) 496
MalI GATC 2 cut(s) 180, 357
MboI GATC 2 cut(s) 178, 355
MboII GAAGA 6 cut(s) 134, 185, 229, 310, 392, 470
MflI RGATCY 1 cut(s) 355
MlsI TGGCCA 1 cut(s) 278
MluCI AATT 3 cut(s) 22, 67, 309
MluNI TGGCCA 1 cut(s) 278
MnlI CCTC 2 cut(s) 154, 213
Mox20I TGGCCA 1 cut(s) 278
MscI TGGCCA 1 cut(s) 278
MseI TTAA 1 cut(s) 486
Msp20I TGGCCA 1 cut(s) 278
MspA1I CMGCKG 1 cut(s) 418
MspI CCGG 2 cut(s) 211, 384
MspR9I CCNGG 2 cut(s) 426, 477
MvaI CCWGG 2 cut(s) 426, 477
MwoI GCNNNNNNNGC 2 cut(s) 47, 341
NdeII GATC 2 cut(s) 178, 355
NlaIII CATG 1 cut(s) 245
NlaIV GGNNCC 4 cut(s) 336, 382, 481, 482
PcsI WCGNNNNNNNCGW 1 cut(s) 165
PfeI GAWTC 2 cut(s) 98, 406
PinAI ACCGGT 1 cut(s) 383
PpuMI RGGWCCY 1 cut(s) 480
Psp5II RGGWCCY 1 cut(s) 480
Psp6I CCWGG 2 cut(s) 424, 475
PspGI CCWGG 2 cut(s) 424, 475
PspN4I GGNNCC 4 cut(s) 336, 382, 481, 482
PspPI GGNCC 4 cut(s) 4, 343, 362, 480
PspPPI RGGWCCY 1 cut(s) 480
PsrI GAACNNNNNNTAC 2 cut(s) 219, 251
PstI CTGCAG 1 cut(s) 43
PsuI RGATCY 1 cut(s) 355
SaqAI TTAA 1 cut(s) 486
Sau3AI GATC 2 cut(s) 178, 355
Sau96I GGNCC 4 cut(s) 4, 343, 362, 480
ScrFI CCNGG 2 cut(s) 426, 477
SetI ASST 7 cut(s) 133, 195, 258, 340, 474, 499, 523
SfaNI GCATC 1 cut(s) 148
SfcI CTRYAG 1 cut(s) 39
SinI GGWCC 1 cut(s) 480
Sse9I AATT 3 cut(s) 22, 67, 309
SsiI CCGC 1 cut(s) 418
SspMI CTAG 2 cut(s) 95, 410
StyD4I CCNGG 2 cut(s) 424, 475
TaiI ACGT 1 cut(s) 499
TaqI TCGA 1 cut(s) 446
TasI AATT 3 cut(s) 22, 67, 309
TfiI GAWTC 2 cut(s) 98, 406
Tru1I TTAA 1 cut(s) 486
Tru9I TTAA 1 cut(s) 486
TscAI CASTG 2 cut(s) 69, 442
TspDTI ATGAA 1 cut(s) 471
TspGWI ACGGA 1 cut(s) 529
TspRI CASTG 2 cut(s) 69, 442
VpaK11BI GGWCC 1 cut(s) 480
XapI RAATTY 1 cut(s) 67
XspI CTAG 2 cut(s) 95, 410
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.