Prupe.5G092600_v2.0.a1

iq-domain

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
Physical Location & Seq
Forward (+)
10291332 .. 10295382
4051 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G092600.1

Sequence Viewer

Length: 1335 bp
ATGGGCAAAGCCTCCAAATGGTTCCGCTCCATCCTGGGCCTCAAAAAGCCCGACCCGACCCACCAAACCTCCACCTCCTCCCCAAAACCACCCACCAAAGACAAACGCCGCTGGAGCTTCGTCAAGTCCTACAGAGAAAAAAACCACCACCGCCATCAAAACGACACCCCGCCGCTTCCTTCCGACTCCTCAAACGACGCCGTGGTCGATCCCAACAAACACGCCATCGCAGTCGCAGCCGCGACCGCCGCCGTGGCCGAAGCCGCAGTCGCCGCCGCGCAAGCTGCCGCCGCCGTGGTCCGCCTGACGAGCAGCGGACGGTGCCCCAGCAACCCCGCGGCGCACGTTAGCACGGCCCTAATTGGGGTCCGCGAAGAAGAATGGGCCGCTCTGAAGATTCAAGCTGCTTTCCGAGGCTGTTTGGCAAGGAGAGCATTGCGAGCATTAAAGGGATTGGTGAGACTTCAGGCACTGGTAAGAGGTCATATTGCGAGGAAGAACAATGCTGCGCGATTGCAGCGGCTGCAAGCAATCTTGCGTGCTCAGGCGAGAGCTCGAACAGGGCGGTCCCAAATTTCTGAGCTCTCACATTCAAGGACCAAGTCTTCTCAATTTCACCAACCTGGTCCAGCAACCCCTGAAAAATTTGAACATCCCATCCGATCCAGGAGTACAAAACTCGAGCAATTTTCAACACTCAGGCGGAATATCTCCAGATCATATGGCACTACAGATGATGAAAAGAATGACAGGGTCCTTGAAATCGATACTGGGAAACCATACATCGCAACTAAACGGAGAAACCTTTTCCACTCTACTCATCTTGCTCTGGCTTCAGACCAATACAGCCATAGCTTTACCACTTCAAAAGACTCTACAAGCCATCAAACACTTCCAAGTCCATCTTCTTGCGAGGTCCAATCTTTAACTCCATTGAAATTCTCTCGAGAGGTTGAGGAAGACTCTTTCTGCACTGCCAACAGTAGTCCTCAGTTTTATTCCACTTCATCAAGGGGCGGTAATTCAAAGAGAAGTCCCTTCACTCCCACAAGGAGCGATGGCTCGAAAAGTTACCTAAGTGGCTACTCAGATTACCCGAGCTACATGGCATGCACGGAATCTTCAAAGGCGAAGTTAAGGTCTCTTAGTGCTCCAAAGCAGAGGCCTCAGTATGAAAGATCTGGCTCTGCAAAGAGGTACTCCATTCATGGCTTTGGCGAATCGAAATCAAGTGCTCAAAGGGCGTCCGCCTTGCACGCAAACTTTGCAAGCAAAGCCTACCCGGGATCTGGTCGGTTGGACAAGCTTGGGATGCCTGTGGGTTACAGATACTAA

Protein Analysis

445

Amino Acids

48.79

Weight (kDa)

10.35

Isoelectric Point (pI)

61.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0010781)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 203
AccB1I GGYRCC 1 cut(s) 321
AccBSI CCGCTC 2 cut(s) 27, 389
AccII CGCG 5 cut(s) 242, 278, 338, 372, 511
AclWI GGATC 3 cut(s) 203, 657, 1294
AcoI YGGCCR 1 cut(s) 255
AcsI RAATTY 3 cut(s) 573, 644, 938
AcuI CTGAAG 3 cut(s) 413, 449, 819
AcyI GRCGYC 2 cut(s) 198, 1244
AfaI GTAC 2 cut(s) 673, 1199
AfiI CCNNNNNNNGG 4 cut(s) 18, 363, 364, 1289
AgsI TTSAA 9 cut(s) 401, 594, 650, 693, 761, 867, 937, 1026, 1125
AjnI CCWGG 3 cut(s) 33, 622, 665
AjuI GAANNNNNNNTTGG 2 cut(s) 889, 921
AloI GAACNNNNNNTCC 2 cut(s) 642, 674
AluBI AGCT 8 cut(s) 117, 284, 404, 554, 583, 855, 1101, 1306
AluI AGCT 8 cut(s) 117, 284, 404, 554, 583, 855, 1101, 1306
Alw21I GWGCWC 5 cut(s) 544, 556, 585, 1153, 1237
Alw26I GTCTC 2 cut(s) 454, 1146
AlwI GGATC 3 cut(s) 203, 657, 1294
AlwNI CAGNNNCTG 2 cut(s) 472, 523
Ama87I CYCGRG 4 cut(s) 680, 945, 1096, 1282
AoxI GGCC 5 cut(s) 37, 255, 354, 384, 1163
ApeKI GCWGC 7 cut(s) 236, 284, 312, 404, 506, 517, 523
ApoI RAATTY 3 cut(s) 573, 644, 938
ArsI GACNNNNNNTTYG 4 cut(s) 252, 284, 1124, 1156
AspLEI GCGC 3 cut(s) 280, 343, 511
AsuC2I CCSGG 2 cut(s) 1283, 1284
AsuHPI GGTGA 2 cut(s) 469, 608
AvaI CYCGRG 4 cut(s) 680, 945, 1096, 1282
AvaII GGWCC 7 cut(s) 298, 367, 567, 597, 626, 754, 916
BaeGI GKGCMC 1 cut(s) 326
BanI GGYRCC 1 cut(s) 321
BanII GRGCYC 2 cut(s) 556, 585
BbsI GAAGAC 2 cut(s) 597, 966
Bbv12I GWGCWC 5 cut(s) 544, 556, 585, 1153, 1237
BbvI GCAGC 7 cut(s) 248, 271, 324, 391, 493, 510, 529
BccI CCATC 7 cut(s) 38, 162, 233, 665, 891, 910, 1052
BceAI ACGGC 4 cut(s) 185, 236, 278, 369
BciT130I CCWGG 3 cut(s) 35, 624, 667
BcnI CCSGG 2 cut(s) 1283, 1284
BcoDI GTCTC 2 cut(s) 454, 1146
BfmI CTRYAG 2 cut(s) 130, 729
BglI GCCNNNNNGGC 1 cut(s) 254
BglII AGATCT 1 cut(s) 1178
Bme1390I CCNGG 5 cut(s) 35, 624, 667, 1283, 1284
Bme18I GGWCC 7 cut(s) 298, 367, 567, 597, 626, 754, 916
BmeT110I CYCGRG 4 cut(s) 680, 945, 1096, 1282
BmiI GGNNCC 5 cut(s) 23, 323, 368, 569, 755
BmrFI CCNGG 5 cut(s) 35, 624, 667, 1283, 1284
BmrI ACTGGG 1 cut(s) 780
BmsI GCATC 1 cut(s) 1302
BmuI ACTGGG 1 cut(s) 780
BpiI GAAGAC 2 cut(s) 597, 966
BplI GAGNNNNNCTC 2 cut(s) 947, 979
BpmI CTGGAG 2 cut(s) 133, 697
Bpu10I CCTNAGC 1 cut(s) 543
BpuMI CCSGG 2 cut(s) 1283, 1284
Bsa29I ATCGAT 1 cut(s) 765
BsaHI GRCGYC 2 cut(s) 198, 1244
BsaI GGTCTC 1 cut(s) 1146
BsaJI CCNNGG 7 cut(s) 34, 201, 252, 294, 336, 412, 1282
BsaXI ACNNNNNCTCC 2 cut(s) 53, 83
Bsc4I CCNNNNNNNGG 4 cut(s) 18, 363, 364, 1289
Bse1I ACTGG 2 cut(s) 477, 775
Bse3DI GCAATG 1 cut(s) 434
BseBI CCWGG 3 cut(s) 35, 624, 667
BseCI ATCGAT 1 cut(s) 765
BseDI CCNNGG 7 cut(s) 34, 201, 252, 294, 336, 412, 1282
BseGI GGATG 4 cut(s) 30, 652, 657, 1317
BseLI CCNNNNNNNGG 4 cut(s) 18, 363, 364, 1289
BseMI GCAATG 1 cut(s) 434
BseMII CTCAG 6 cut(s) 557, 570, 712, 1004, 1101, 1181
BseNI ACTGG 2 cut(s) 477, 775
BseRI GAGGAG 2 cut(s) 67, 178
BseSI GKGCMC 1 cut(s) 326
BseXI GCAGC 7 cut(s) 248, 271, 324, 391, 493, 510, 529
BseYI CCCAGC 1 cut(s) 326
BsgI GTGCAG 1 cut(s) 955
Bsh1236I CGCG 5 cut(s) 242, 278, 338, 372, 511
Bsh1285I CGRYCG 1 cut(s) 246
BshFI GGCC 5 cut(s) 39, 257, 356, 386, 1165
BshNI GGYRCC 1 cut(s) 321
BshVI ATCGAT 1 cut(s) 765
BsiEI CGRYCG 1 cut(s) 246
BsiHKAI GWGCWC 5 cut(s) 544, 556, 585, 1153, 1237
BsiHKCI CYCGRG 4 cut(s) 680, 945, 1096, 1282
BsiSI CCGG 1 cut(s) 1283
BslFI GGGAC 2 cut(s) 553, 1020
BslI CCNNNNNNNGG 4 cut(s) 18, 363, 364, 1289
BsmAI GTCTC 2 cut(s) 454, 1146
BsmFI GGGAC 2 cut(s) 553, 1020
BsnI GGCC 5 cut(s) 39, 257, 356, 386, 1165
Bso31I GGTCTC 1 cut(s) 1146
BsoBI CYCGRG 4 cut(s) 680, 945, 1096, 1282
Bsp1286I GDGCHC 6 cut(s) 326, 544, 556, 585, 1153, 1237
Bsp143I GATC 5 cut(s) 208, 662, 716, 1178, 1286
BspANI GGCC 5 cut(s) 39, 257, 356, 386, 1165
BspCNI CTCAG 6 cut(s) 556, 571, 711, 1003, 1100, 1180
BspDI ATCGAT 1 cut(s) 765
BspFNI CGCG 5 cut(s) 242, 278, 338, 372, 511
BspLI GGNNCC 5 cut(s) 23, 323, 368, 569, 755
BspPI GGATC 3 cut(s) 203, 657, 1294
BspT107I GGYRCC 1 cut(s) 321
BspTNI GGTCTC 1 cut(s) 1146
BsrBI CCGCTC 2 cut(s) 27, 389
BsrDI GCAATG 1 cut(s) 434
BsrI ACTGG 2 cut(s) 477, 775
BssECI CCNNGG 7 cut(s) 34, 201, 252, 294, 336, 412, 1282
BssMI GATC 5 cut(s) 208, 662, 716, 1178, 1286
BssNI GRCGYC 2 cut(s) 198, 1244
Bst2UI CCWGG 3 cut(s) 35, 624, 667
Bst4CI ACNGT 2 cut(s) 321, 983
BstACI GRCGYC 2 cut(s) 198, 1244
BstAPI GCANNNNNTGC 2 cut(s) 523, 1265
BstC8I GCNNGC 7 cut(s) 282, 441, 528, 540, 1111, 1257, 1270
BstDEI CTNAG 8 cut(s) 543, 579, 698, 990, 1076, 1087, 1145, 1167
BstDSI CCRYGG 4 cut(s) 201, 252, 294, 336
BstF5I GGATG 4 cut(s) 30, 652, 657, 1317
BstFNI CGCG 5 cut(s) 242, 278, 338, 372, 511
BstHHI GCGC 3 cut(s) 280, 343, 511
BstKTI GATC 5 cut(s) 211, 665, 719, 1181, 1289
BstMAI GTCTC 2 cut(s) 454, 1146
BstMBI GATC 5 cut(s) 208, 662, 716, 1178, 1286
BstMCI CGRYCG 1 cut(s) 246
BstNI CCWGG 3 cut(s) 35, 624, 667
BstNSI RCATGY 1 cut(s) 1113
BstSCI CCNGG 5 cut(s) 33, 622, 665, 1281, 1282
BstSFI CTRYAG 2 cut(s) 130, 729
BstSLI GKGCMC 1 cut(s) 326
BstUI CGCG 5 cut(s) 242, 278, 338, 372, 511
BstV1I GCAGC 7 cut(s) 248, 271, 324, 391, 493, 510, 529
BstV2I GAAGAC 2 cut(s) 597, 966
BstX2I RGATCY 2 cut(s) 1178, 1286
BstYI RGATCY 2 cut(s) 1178, 1286
Bsu15I ATCGAT 1 cut(s) 765
BsuRI GGCC 5 cut(s) 39, 257, 356, 386, 1165
BsuTUI ATCGAT 1 cut(s) 765
BtgI CCRYGG 4 cut(s) 201, 252, 294, 336
BtgZI GCGATG 3 cut(s) 211, 769, 1071
BtsCI GGATG 4 cut(s) 30, 652, 657, 1317
BtsI GCAGTG 1 cut(s) 972
BtsIMutI CAGTG 2 cut(s) 470, 972
Cac8I GCNNGC 7 cut(s) 282, 441, 528, 540, 1111, 1257, 1270
CaiI CAGNNNCTG 2 cut(s) 472, 523
CfoI GCGC 3 cut(s) 280, 343, 511
Cfr42I CCGCGG 1 cut(s) 339
Cfr9I CCCGGG 1 cut(s) 1282
ClaI ATCGAT 1 cut(s) 765
CseI GACGC 2 cut(s) 206, 1233
CsiI ACCWGGT 1 cut(s) 622
Csp6I GTAC 2 cut(s) 672, 1198
CviAII CATG 3 cut(s) 1105, 1110, 1208
CviQI GTAC 2 cut(s) 672, 1198
DdeI CTNAG 8 cut(s) 543, 579, 698, 990, 1076, 1087, 1145, 1167
DpnI GATC 5 cut(s) 210, 664, 718, 1180, 1288
DpnII GATC 5 cut(s) 208, 662, 716, 1178, 1286
DrdI GACNNNNNNGTC 1 cut(s) 203
DseDI GACNNNNNNGTC 1 cut(s) 203
EaeI YGGCCR 1 cut(s) 255
EciI GGCGGA 3 cut(s) 290, 718, 1237
Ecl136II GAGCTC 2 cut(s) 554, 583
Eco147I AGGCCT 1 cut(s) 1165
Eco24I GRGCYC 2 cut(s) 556, 585
Eco31I GGTCTC 1 cut(s) 1146
Eco47I GGWCC 7 cut(s) 298, 367, 567, 597, 626, 754, 916
Eco53kI GAGCTC 2 cut(s) 554, 583
Eco57I CTGAAG 3 cut(s) 413, 449, 819
Eco88I CYCGRG 4 cut(s) 680, 945, 1096, 1282
EcoICRI GAGCTC 2 cut(s) 554, 583
EcoO109I RGGNCCY 1 cut(s) 754
EcoRII CCWGG 3 cut(s) 33, 622, 665
EcoT38I GRGCYC 2 cut(s) 556, 585
FaeI CATG 3 cut(s) 1108, 1113, 1211
FaiI YATR 9 cut(s) 486, 721, 723, 781, 852, 1106, 1111, 1173, 1209
FalI AAGNNNNNCTT 2 cut(s) 889, 921
FaqI GGGAC 2 cut(s) 553, 1020
FatI CATG 3 cut(s) 1104, 1109, 1207
FauI CCCGC 2 cut(s) 177, 343
FauNDI CATATG 1 cut(s) 721
FokI GGATG 4 cut(s) 17, 639, 644, 1324
FriOI GRGCYC 2 cut(s) 556, 585
GlaI GCGC 3 cut(s) 279, 342, 510
GsaI CCCAGC 1 cut(s) 330
GsuI CTGGAG 2 cut(s) 133, 697
HaeIII GGCC 5 cut(s) 39, 257, 356, 386, 1165
HapII CCGG 1 cut(s) 1283
HgaI GACGC 2 cut(s) 206, 1233
HhaI GCGC 3 cut(s) 280, 343, 511
Hin1I GRCGYC 2 cut(s) 198, 1244
Hin1II CATG 3 cut(s) 1108, 1113, 1211
Hin6I GCGC 3 cut(s) 278, 341, 509
HinP1I GCGC 3 cut(s) 278, 341, 509
HindIII AAGCTT 1 cut(s) 1304
HinfI GANTC 6 cut(s) 185, 397, 872, 962, 1118, 1220
HpaII CCGG 1 cut(s) 1283
HphI GGTGA 2 cut(s) 469, 608
Hpy188I TCNGA 7 cut(s) 184, 393, 413, 580, 662, 838, 1090
Hpy188III TCNNGA 3 cut(s) 714, 945, 947
Hpy99I CGWCG 1 cut(s) 200
HpyAV CCTTC 2 cut(s) 189, 1048
HpyCH4III ACNGT 2 cut(s) 321, 983
HpyCH4IV ACGT 1 cut(s) 345
HpyCH4V TGCA 7 cut(s) 517, 526, 972, 1113, 1190, 1255, 1268
HpyF3I CTNAG 8 cut(s) 543, 579, 698, 990, 1076, 1087, 1145, 1167
HpySE526I ACGT 1 cut(s) 345
Hsp92I GRCGYC 2 cut(s) 198, 1244
Hsp92II CATG 3 cut(s) 1108, 1113, 1211
HspAI GCGC 3 cut(s) 278, 341, 509
KspI CCGCGG 1 cut(s) 339
Kzo9I GATC 5 cut(s) 208, 662, 716, 1178, 1286
LmnI GCTCC 4 cut(s) 32, 114, 1053, 1156
Lsp1109I GCAGC 7 cut(s) 248, 271, 324, 391, 493, 510, 529
LweI GCATC 1 cut(s) 1302
MabI ACCWGGT 1 cut(s) 622
MaeII ACGT 1 cut(s) 345
MaeIII GTNAC 2 cut(s) 1070, 1322
MalI GATC 5 cut(s) 210, 664, 718, 1180, 1288
MbiI CCGCTC 2 cut(s) 27, 389
MboI GATC 5 cut(s) 208, 662, 716, 1178, 1286
MboII GAAGA 8 cut(s) 386, 389, 406, 508, 597, 897, 971, 1113
MflI RGATCY 2 cut(s) 1178, 1286
MhlI GDGCHC 6 cut(s) 326, 544, 556, 585, 1153, 1237
MluCI AATT 7 cut(s) 360, 573, 611, 644, 686, 938, 1021
MlyI GAGTC 3 cut(s) 179, 866, 956
MmeI TCCRAC 2 cut(s) 207, 1278
MseI TTAA 3 cut(s) 446, 926, 1136
MspA1I CMGCKG 4 cut(s) 111, 315, 338, 520
MspI CCGG 1 cut(s) 1283
MspR9I CCNGG 5 cut(s) 35, 624, 667, 1283, 1284
MvaI CCWGG 3 cut(s) 35, 624, 667
MvnI CGCG 5 cut(s) 242, 278, 338, 372, 511
NciI CCSGG 2 cut(s) 1283, 1284
NdeI CATATG 1 cut(s) 721
NdeII GATC 5 cut(s) 208, 662, 716, 1178, 1286
NlaIII CATG 3 cut(s) 1108, 1113, 1211
NlaIV GGNNCC 5 cut(s) 23, 323, 368, 569, 755
NspI RCATGY 1 cut(s) 1113
PaeI GCATGC 1 cut(s) 1113
PaeR7I CTCGAG 2 cut(s) 680, 945
PceI AGGCCT 1 cut(s) 1165
PcsI WCGNNNNNNNCGW 1 cut(s) 204
PfeI GAWTC 3 cut(s) 397, 1118, 1220
PflFI GACNNNGTC 2 cut(s) 601, 752
PfoI TCCNGGA 1 cut(s) 665
PleI GAGTC 3 cut(s) 179, 866, 956
PpsI GAGTC 3 cut(s) 179, 866, 956
PpuMI RGGWCCY 1 cut(s) 754
Psp124BI GAGCTC 2 cut(s) 556, 585
Psp5II RGGWCCY 1 cut(s) 754
Psp6I CCWGG 3 cut(s) 33, 622, 665
PspFI CCCAGC 1 cut(s) 326
PspGI CCWGG 3 cut(s) 33, 622, 665
PspN4I GGNNCC 5 cut(s) 23, 323, 368, 569, 755
PspPPI RGGWCCY 1 cut(s) 754
PspXI VCTCGAGB 1 cut(s) 680
PstNI CAGNNNCTG 2 cut(s) 472, 523
PsuI RGATCY 2 cut(s) 1178, 1286
PsyI GACNNNGTC 2 cut(s) 601, 752
RsaI GTAC 2 cut(s) 673, 1199
RsaNI GTAC 2 cut(s) 672, 1198
SacI GAGCTC 2 cut(s) 556, 585
SacII CCGCGG 1 cut(s) 339
SaqAI TTAA 3 cut(s) 446, 926, 1136
Sau3AI GATC 5 cut(s) 208, 662, 716, 1178, 1286
SchI GAGTC 3 cut(s) 179, 866, 956
ScrFI CCNGG 5 cut(s) 35, 624, 667, 1283, 1284
SduI GDGCHC 6 cut(s) 326, 544, 556, 585, 1153, 1237
SexAI ACCWGGT 1 cut(s) 622
SfaNI GCATC 1 cut(s) 1302
SfcI CTRYAG 2 cut(s) 130, 729
Sfr274I CTCGAG 2 cut(s) 680, 945
Sfr303I CCGCGG 1 cut(s) 339
SgrBI CCGCGG 1 cut(s) 339
SinI GGWCC 7 cut(s) 298, 367, 567, 597, 626, 754, 916
SlaI CTCGAG 2 cut(s) 680, 945
SmaI CCCGGG 1 cut(s) 1284
SmlI CTYRAG 2 cut(s) 680, 945
SmoI CTYRAG 2 cut(s) 680, 945
SphI GCATGC 1 cut(s) 1113
Sse9I AATT 7 cut(s) 360, 573, 611, 644, 686, 938, 1021
SseBI AGGCCT 1 cut(s) 1165
SstI GAGCTC 2 cut(s) 556, 585
StuI AGGCCT 1 cut(s) 1165
StyD4I CCNGG 5 cut(s) 33, 622, 665, 1281, 1282
TaaI ACNGT 2 cut(s) 321, 983
TaiI ACGT 1 cut(s) 348
TaqI TCGA 7 cut(s) 207, 556, 681, 765, 946, 1064, 1223
TasI AATT 7 cut(s) 360, 573, 611, 644, 686, 938, 1021
TatI WGTACW 1 cut(s) 671
TfiI GAWTC 3 cut(s) 397, 1118, 1220
Tru1I TTAA 3 cut(s) 446, 926, 1136
Tru9I TTAA 3 cut(s) 446, 926, 1136
TscAI CASTG 2 cut(s) 477, 979
TseI GCWGC 7 cut(s) 236, 284, 312, 404, 506, 517, 523
TspDTI ATGAA 4 cut(s) 753, 996, 1188, 1196
TspGWI ACGGA 2 cut(s) 811, 1130
TspMI CCCGGG 1 cut(s) 1282
TspRI CASTG 2 cut(s) 477, 979
Tth111I GACNNNGTC 2 cut(s) 601, 752
VpaK11BI GGWCC 7 cut(s) 298, 367, 567, 597, 626, 754, 916
XapI RAATTY 3 cut(s) 573, 644, 938
XceI RCATGY 1 cut(s) 1113
XhoI CTCGAG 2 cut(s) 680, 945
XmaI CCCGGG 1 cut(s) 1282
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.