iq-domain
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G23060 |
| fragaria_vesca | FvH4_5g01680 FvH4_5g01680 FvH4_5g01680 |
| malus_domestica | MD04G1065600.v1.1 |
| prunus_persica | Prupe.5G092600_v2.0.a1 |
| pyrus_communis | pycom04g05910 pycom06g07330 |
| rosa_chinensis | RchiOBHm_Chr7g0199041 |
| rosa_laevigata | RLG00000003820 |
| rosa_multiflora | Rmu_co8081240.1_g000001 Rmu_sc0006266.1_g000033 Rmu_sc0007328.1_g000001 |
| rosa_roxburghii | Rroxscaffold_3G00257190 |
| rosa_rugosa | Rorug07G0052200 |
| rosa_samantha | Rh7AG175400 Rh7BG178800 Rh7CG184600 Rh7DG178200 |
| rosa_wichuraiana | Rw7G015390 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 1247 |
| AccI | GTMKAC | 2 cut(s) | 213, 1181 |
| AccII | CGCG | 3 cut(s) | 299, 344, 372 |
| AclWI | GGATC | 1 cut(s) | 1294 |
| AcoI | YGGCCR | 3 cut(s) | 261, 291, 1291 |
| AcsI | RAATTY | 3 cut(s) | 366, 396, 644 |
| AcuI | CTGAAG | 1 cut(s) | 449 |
| AcyI | GRCGYC | 1 cut(s) | 1244 |
| AfaI | GTAC | 5 cut(s) | 174, 306, 673, 789, 1234 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 18, 321, 829, 1160, 1289 |
| AflII | CTTAAG | 1 cut(s) | 1075 |
| AgeI | ACCGGT | 1 cut(s) | 510 |
| AgsI | TTSAA | 5 cut(s) | 401, 650, 867, 937, 1027 |
| AjnI | CCWGG | 2 cut(s) | 33, 713 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 642, 674 |
| Alw21I | GWGCWC | 6 cut(s) | 351, 556, 585, 918, 1115, 1153 |
| Alw26I | GTCTC | 2 cut(s) | 454, 1146 |
| Alw44I | GTGCAC | 2 cut(s) | 347, 1111 |
| AlwI | GGATC | 1 cut(s) | 1294 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 523, 1332 |
| Ama87I | CYCGRG | 3 cut(s) | 555, 943, 1282 |
| AoxI | GGCC | 9 cut(s) | 37, 261, 267, 291, 384, 567, 831, 1163, 1291 |
| ApaI | GGGCCC | 1 cut(s) | 571 |
| ApaLI | GTGCAC | 2 cut(s) | 347, 1111 |
| ApeKI | GCWGC | 3 cut(s) | 242, 318, 404 |
| ApoI | RAATTY | 3 cut(s) | 366, 396, 644 |
| AsiGI | ACCGGT | 1 cut(s) | 510 |
| AspLEI | GCGC | 1 cut(s) | 156 |
| AspS9I | GGNCC | 8 cut(s) | 37, 384, 567, 568, 597, 626, 754, 1163 |
| AsuC2I | CCSGG | 2 cut(s) | 1283, 1284 |
| AsuHPI | GGTGA | 4 cut(s) | 469, 608, 812, 1229 |
| AvaI | CYCGRG | 3 cut(s) | 555, 943, 1282 |
| AvaII | GGWCC | 3 cut(s) | 597, 626, 754 |
| BaeGI | GKGCMC | 3 cut(s) | 351, 571, 1115 |
| BanII | GRGCYC | 4 cut(s) | 556, 571, 585, 918 |
| BbsI | GAAGAC | 1 cut(s) | 966 |
| Bbv12I | GWGCWC | 6 cut(s) | 351, 556, 585, 918, 1115, 1153 |
| BbvI | GCAGC | 3 cut(s) | 254, 330, 391 |
| BccI | CCATC | 3 cut(s) | 891, 910, 1052 |
| BceAI | ACGGC | 3 cut(s) | 191, 221, 323 |
| BciT130I | CCWGG | 2 cut(s) | 35, 715 |
| BcnI | CCSGG | 2 cut(s) | 1283, 1284 |
| BcoDI | GTCTC | 2 cut(s) | 454, 1146 |
| BfaI | CTAG | 1 cut(s) | 1047 |
| BfmI | CTRYAG | 1 cut(s) | 142 |
| BfoI | RGCGCY | 1 cut(s) | 157 |
| BfrI | CTTAAG | 1 cut(s) | 1075 |
| BglI | GCCNNNNNGGC | 2 cut(s) | 260, 290 |
| Bme1390I | CCNGG | 4 cut(s) | 35, 715, 1283, 1284 |
| Bme18I | GGWCC | 3 cut(s) | 597, 626, 754 |
| BmeT110I | CYCGRG | 3 cut(s) | 555, 943, 1282 |
| BmgT120I | GGNCC | 8 cut(s) | 37, 384, 567, 568, 597, 626, 754, 1163 |
| BmiI | GGNNCC | 3 cut(s) | 569, 755, 1164 |
| BmrFI | CCNGG | 4 cut(s) | 35, 715, 1283, 1284 |
| BmrI | ACTGGG | 1 cut(s) | 780 |
| BmsI | GCATC | 3 cut(s) | 39, 369, 1302 |
| BmuI | ACTGGG | 1 cut(s) | 780 |
| BpiI | GAAGAC | 1 cut(s) | 966 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 947, 979 |
| BpmI | CTGGAG | 3 cut(s) | 46, 145, 697 |
| BpuMI | CCSGG | 2 cut(s) | 1283, 1284 |
| BsaHI | GRCGYC | 1 cut(s) | 1244 |
| BsaI | GGTCTC | 1 cut(s) | 1146 |
| BsaJI | CCNNGG | 7 cut(s) | 34, 237, 264, 297, 342, 412, 1282 |
| BsaWI | WCCGGW | 1 cut(s) | 510 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 18, 321, 829, 1160, 1289 |
| Bse118I | RCCGGY | 3 cut(s) | 289, 510, 1315 |
| Bse1I | ACTGG | 1 cut(s) | 775 |
| Bse3DI | GCAATG | 1 cut(s) | 434 |
| BseBI | CCWGG | 2 cut(s) | 35, 715 |
| BseDI | CCNNGG | 7 cut(s) | 34, 237, 264, 297, 342, 412, 1282 |
| BseGI | GGATG | 3 cut(s) | 30, 652, 1317 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 18, 321, 829, 1160, 1289 |
| BseMI | GCAATG | 1 cut(s) | 434 |
| BseMII | CTCAG | 3 cut(s) | 570, 656, 849 |
| BseNI | ACTGG | 1 cut(s) | 775 |
| BseRI | GAGGAG | 7 cut(s) | 67, 70, 73, 76, 79, 187, 682 |
| BseSI | GKGCMC | 3 cut(s) | 351, 571, 1115 |
| BseX3I | CGGCCG | 1 cut(s) | 291 |
| BseXI | GCAGC | 3 cut(s) | 254, 330, 391 |
| BsgI | GTGCAG | 1 cut(s) | 955 |
| Bsh1236I | CGCG | 3 cut(s) | 299, 344, 372 |
| Bsh1285I | CGRYCG | 2 cut(s) | 252, 294 |
| BshFI | GGCC | 9 cut(s) | 39, 263, 269, 293, 386, 569, 833, 1165, 1293 |
| BshTI | ACCGGT | 1 cut(s) | 510 |
| BsiEI | CGRYCG | 2 cut(s) | 252, 294 |
| BsiHKAI | GWGCWC | 6 cut(s) | 351, 556, 585, 918, 1115, 1153 |
| BsiHKCI | CYCGRG | 3 cut(s) | 555, 943, 1282 |
| BsiSI | CCGG | 4 cut(s) | 290, 511, 1283, 1316 |
| BsiWI | CGTACG | 1 cut(s) | 172 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 18, 321, 829, 1160, 1289 |
| BsmAI | GTCTC | 2 cut(s) | 454, 1146 |
| BsnI | GGCC | 9 cut(s) | 39, 263, 269, 293, 386, 569, 833, 1165, 1293 |
| Bso31I | GGTCTC | 1 cut(s) | 1146 |
| BsoBI | CYCGRG | 3 cut(s) | 555, 943, 1282 |
| Bsp120I | GGGCCC | 1 cut(s) | 567 |
| Bsp1286I | GDGCHC | 7 cut(s) | 351, 556, 571, 585, 918, 1115, 1153 |
| Bsp143I | GATC | 2 cut(s) | 1226, 1286 |
| Bsp68I | TCGCGA | 1 cut(s) | 372 |
| BspANI | GGCC | 9 cut(s) | 39, 263, 269, 293, 386, 569, 833, 1165, 1293 |
| BspCNI | CTCAG | 3 cut(s) | 571, 657, 848 |
| BspFNI | CGCG | 3 cut(s) | 299, 344, 372 |
| BspLI | GGNNCC | 3 cut(s) | 569, 755, 1164 |
| BspPI | GGATC | 1 cut(s) | 1294 |
| BspTI | CTTAAG | 1 cut(s) | 1075 |
| BspTNI | GGTCTC | 1 cut(s) | 1146 |
| BsrDI | GCAATG | 1 cut(s) | 434 |
| BsrFI | RCCGGY | 3 cut(s) | 289, 510, 1315 |
| BsrI | ACTGG | 1 cut(s) | 775 |
| BssAI | RCCGGY | 3 cut(s) | 289, 510, 1315 |
| BssECI | CCNNGG | 7 cut(s) | 34, 237, 264, 297, 342, 412, 1282 |
| BssMI | GATC | 2 cut(s) | 1226, 1286 |
| BssNI | GRCGYC | 1 cut(s) | 1244 |
| Bst2UI | CCWGG | 2 cut(s) | 35, 715 |
| Bst4CI | ACNGT | 2 cut(s) | 353, 983 |
| Bst6I | CTCTTC | 2 cut(s) | 1022, 1187 |
| BstACI | GRCGYC | 1 cut(s) | 1244 |
| BstAFI | CTTAAG | 1 cut(s) | 1075 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1312 |
| BstC8I | GCNNGC | 6 cut(s) | 323, 441, 546, 914, 1111, 1257 |
| BstDEI | CTNAG | 5 cut(s) | 579, 665, 835, 1131, 1145 |
| BstDSI | CCRYGG | 3 cut(s) | 237, 297, 342 |
| BstF5I | GGATG | 3 cut(s) | 30, 652, 1317 |
| BstFNI | CGCG | 3 cut(s) | 299, 344, 372 |
| BstH2I | RGCGCY | 1 cut(s) | 157 |
| BstHHI | GCGC | 1 cut(s) | 156 |
| BstKTI | GATC | 2 cut(s) | 1229, 1289 |
| BstMAI | GTCTC | 2 cut(s) | 454, 1146 |
| BstMBI | GATC | 2 cut(s) | 1226, 1286 |
| BstMCI | CGRYCG | 2 cut(s) | 252, 294 |
| BstNI | CCWGG | 2 cut(s) | 35, 715 |
| BstSCI | CCNGG | 4 cut(s) | 33, 713, 1281, 1282 |
| BstSFI | CTRYAG | 1 cut(s) | 142 |
| BstSLI | GKGCMC | 3 cut(s) | 351, 571, 1115 |
| BstUI | CGCG | 3 cut(s) | 299, 344, 372 |
| BstV1I | GCAGC | 3 cut(s) | 254, 330, 391 |
| BstV2I | GAAGAC | 1 cut(s) | 966 |
| BstX2I | RGATCY | 1 cut(s) | 1286 |
| BstYI | RGATCY | 1 cut(s) | 1286 |
| BstZI | CGGCCG | 1 cut(s) | 291 |
| BsuRI | GGCC | 9 cut(s) | 39, 263, 269, 293, 386, 569, 833, 1165, 1293 |
| BtgI | CCRYGG | 3 cut(s) | 237, 297, 342 |
| BtsCI | GGATG | 3 cut(s) | 30, 652, 1317 |
| BtsI | GCAGTG | 1 cut(s) | 972 |
| BtsIMutI | CAGTG | 2 cut(s) | 972, 1113 |
| BtuMI | TCGCGA | 1 cut(s) | 372 |
| Cac8I | GCNNGC | 6 cut(s) | 323, 441, 546, 914, 1111, 1257 |
| CaiI | CAGNNNCTG | 2 cut(s) | 523, 1332 |
| CfoI | GCGC | 1 cut(s) | 156 |
| Cfr10I | RCCGGY | 3 cut(s) | 289, 510, 1315 |
| Cfr13I | GGNCC | 8 cut(s) | 37, 384, 567, 568, 597, 626, 754, 1163 |
| Cfr42I | CCGCGG | 2 cut(s) | 300, 345 |
| Cfr9I | CCCGGG | 1 cut(s) | 1282 |
| CseI | GACGC | 1 cut(s) | 215 |
| Csp6I | GTAC | 5 cut(s) | 173, 305, 672, 788, 1233 |
| CspAI | ACCGGT | 1 cut(s) | 510 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 219, 254 |
| CviAII | CATG | 4 cut(s) | 680, 1105, 1208, 1307 |
| CviQI | GTAC | 5 cut(s) | 173, 305, 672, 788, 1233 |
| DdeI | CTNAG | 5 cut(s) | 579, 665, 835, 1131, 1145 |
| DpnI | GATC | 2 cut(s) | 1228, 1288 |
| DpnII | GATC | 2 cut(s) | 1226, 1286 |
| EaeI | YGGCCR | 3 cut(s) | 261, 291, 1291 |
| EagI | CGGCCG | 1 cut(s) | 291 |
| Eam1104I | CTCTTC | 2 cut(s) | 1022, 1187 |
| EarI | CTCTTC | 2 cut(s) | 1022, 1187 |
| Ecl136II | GAGCTC | 3 cut(s) | 554, 583, 916 |
| EclXI | CGGCCG | 1 cut(s) | 291 |
| Eco24I | GRGCYC | 4 cut(s) | 556, 571, 585, 918 |
| Eco31I | GGTCTC | 1 cut(s) | 1146 |
| Eco47I | GGWCC | 3 cut(s) | 597, 626, 754 |
| Eco52I | CGGCCG | 1 cut(s) | 291 |
| Eco53kI | GAGCTC | 3 cut(s) | 554, 583, 916 |
| Eco57I | CTGAAG | 1 cut(s) | 449 |
| Eco88I | CYCGRG | 3 cut(s) | 555, 943, 1282 |
| EcoICRI | GAGCTC | 3 cut(s) | 554, 583, 916 |
| EcoO109I | RGGNCCY | 3 cut(s) | 567, 754, 1163 |
| EcoRI | GAATTC | 1 cut(s) | 366 |
| EcoRII | CCWGG | 2 cut(s) | 33, 713 |
| EcoT38I | GRGCYC | 4 cut(s) | 556, 571, 585, 918 |
| FaeI | CATG | 4 cut(s) | 683, 1108, 1211, 1310 |
| FatI | CATG | 4 cut(s) | 679, 1104, 1207, 1306 |
| FauI | CCCGC | 2 cut(s) | 64, 314 |
| FblI | GTMKAC | 2 cut(s) | 213, 1181 |
| FokI | GGATG | 3 cut(s) | 17, 639, 1324 |
| FriOI | GRGCYC | 4 cut(s) | 556, 571, 585, 918 |
| FspBI | CTAG | 1 cut(s) | 1047 |
| GlaI | GCGC | 1 cut(s) | 155 |
| GsuI | CTGGAG | 3 cut(s) | 46, 145, 697 |
| HaeII | RGCGCY | 1 cut(s) | 157 |
| HaeIII | GGCC | 9 cut(s) | 39, 263, 269, 293, 386, 569, 833, 1165, 1293 |
| HapII | CCGG | 4 cut(s) | 290, 511, 1283, 1316 |
| HgaI | GACGC | 1 cut(s) | 215 |
| HhaI | GCGC | 1 cut(s) | 156 |
| Hin1I | GRCGYC | 1 cut(s) | 1244 |
| Hin1II | CATG | 4 cut(s) | 683, 1108, 1211, 1310 |
| Hin6I | GCGC | 1 cut(s) | 154 |
| HinP1I | GCGC | 1 cut(s) | 154 |
| HincII | GTYRAC | 1 cut(s) | 214 |
| HindII | GTYRAC | 1 cut(s) | 214 |
| HinfI | GANTC | 4 cut(s) | 194, 962, 1118, 1220 |
| HpaII | CCGG | 4 cut(s) | 290, 511, 1283, 1316 |
| HphI | GGTGA | 4 cut(s) | 469, 608, 812, 1229 |
| Hpy166II | GTNNAC | 5 cut(s) | 214, 349, 1113, 1182, 1235 |
| Hpy188I | TCNGA | 8 cut(s) | 335, 365, 413, 580, 662, 838, 1090, 1155 |
| Hpy188III | TCNNGA | 6 cut(s) | 25, 371, 943, 945, 1047, 1224 |
| Hpy8I | GTNNAC | 5 cut(s) | 214, 349, 1113, 1182, 1235 |
| Hpy99I | CGWCG | 1 cut(s) | 209 |
| HpyAV | CCTTC | 1 cut(s) | 1048 |
| HpyCH4III | ACNGT | 2 cut(s) | 353, 983 |
| HpyCH4IV | ACGT | 1 cut(s) | 1244 |
| HpyCH4V | TGCA | 6 cut(s) | 349, 526, 972, 1113, 1255, 1268 |
| HpyF3I | CTNAG | 5 cut(s) | 579, 665, 835, 1131, 1145 |
| HpySE526I | ACGT | 1 cut(s) | 1244 |
| Hsp92I | GRCGYC | 1 cut(s) | 1244 |
| Hsp92II | CATG | 4 cut(s) | 683, 1108, 1211, 1310 |
| HspAI | GCGC | 1 cut(s) | 154 |
| KspI | CCGCGG | 2 cut(s) | 300, 345 |
| Kzo9I | GATC | 2 cut(s) | 1226, 1286 |
| LmnI | GCTCC | 7 cut(s) | 27, 126, 344, 716, 921, 1016, 1156 |
| Lsp1109I | GCAGC | 3 cut(s) | 254, 330, 391 |
| LweI | GCATC | 3 cut(s) | 39, 369, 1302 |
| MaeI | CTAG | 1 cut(s) | 1047 |
| MaeII | ACGT | 1 cut(s) | 1244 |
| MaeIII | GTNAC | 2 cut(s) | 513, 1322 |
| MalI | GATC | 2 cut(s) | 1228, 1288 |
| MboI | GATC | 2 cut(s) | 1226, 1286 |
| MboII | GAAGA | 5 cut(s) | 386, 389, 971, 1039, 1204 |
| MflI | RGATCY | 1 cut(s) | 1286 |
| MhlI | GDGCHC | 7 cut(s) | 351, 556, 571, 585, 918, 1115, 1153 |
| MluCI | AATT | 5 cut(s) | 366, 396, 644, 762, 1099 |
| MlyI | GAGTC | 3 cut(s) | 188, 956, 1229 |
| MmeI | TCCRAC | 2 cut(s) | 225, 685 |
| MseI | TTAA | 2 cut(s) | 446, 1076 |
| MspA1I | CMGCKG | 7 cut(s) | 123, 245, 257, 299, 321, 344, 389 |
| MspCI | CTTAAG | 1 cut(s) | 1075 |
| MspI | CCGG | 4 cut(s) | 290, 511, 1283, 1316 |
| MspR9I | CCNGG | 4 cut(s) | 35, 715, 1283, 1284 |
| MvaI | CCWGG | 2 cut(s) | 35, 715 |
| MvnI | CGCG | 3 cut(s) | 299, 344, 372 |
| NciI | CCSGG | 2 cut(s) | 1283, 1284 |
| NdeII | GATC | 2 cut(s) | 1226, 1286 |
| NlaIII | CATG | 4 cut(s) | 683, 1108, 1211, 1310 |
| NlaIV | GGNNCC | 3 cut(s) | 569, 755, 1164 |
| NmeAIII | GCCGAG | 1 cut(s) | 289 |
| NruI | TCGCGA | 1 cut(s) | 372 |
| PaeR7I | CTCGAG | 2 cut(s) | 555, 943 |
| PcsI | WCGNNNNNNNCGW | 3 cut(s) | 210, 234, 369 |
| PfeI | GAWTC | 1 cut(s) | 1118 |
| Pfl23II | CGTACG | 1 cut(s) | 172 |
| PflFI | GACNNNGTC | 2 cut(s) | 209, 752 |
| PinAI | ACCGGT | 1 cut(s) | 510 |
| PleI | GAGTC | 3 cut(s) | 188, 956, 1228 |
| PpsI | GAGTC | 3 cut(s) | 188, 956, 1228 |
| PpuMI | RGGWCCY | 1 cut(s) | 754 |
| Psp124BI | GAGCTC | 3 cut(s) | 556, 585, 918 |
| Psp5II | RGGWCCY | 1 cut(s) | 754 |
| Psp6I | CCWGG | 2 cut(s) | 33, 713 |
| PspGI | CCWGG | 2 cut(s) | 33, 713 |
| PspLI | CGTACG | 1 cut(s) | 172 |
| PspN4I | GGNNCC | 3 cut(s) | 569, 755, 1164 |
| PspOMI | GGGCCC | 1 cut(s) | 567 |
| PspPI | GGNCC | 8 cut(s) | 37, 384, 567, 568, 597, 626, 754, 1163 |
| PspPPI | RGGWCCY | 1 cut(s) | 754 |
| PspXI | VCTCGAGB | 1 cut(s) | 555 |
| PstNI | CAGNNNCTG | 2 cut(s) | 523, 1332 |
| PsuI | RGATCY | 1 cut(s) | 1286 |
| PsyI | GACNNNGTC | 2 cut(s) | 209, 752 |
| RruI | TCGCGA | 1 cut(s) | 372 |
| RsaI | GTAC | 5 cut(s) | 174, 306, 673, 789, 1234 |
| RsaNI | GTAC | 5 cut(s) | 173, 305, 672, 788, 1233 |
| SacI | GAGCTC | 3 cut(s) | 556, 585, 918 |
| SacII | CCGCGG | 2 cut(s) | 300, 345 |
| SalI | GTCGAC | 1 cut(s) | 212 |
| SaqAI | TTAA | 2 cut(s) | 446, 1076 |
| Sau3AI | GATC | 2 cut(s) | 1226, 1286 |
| Sau96I | GGNCC | 8 cut(s) | 37, 384, 567, 568, 597, 626, 754, 1163 |
| SchI | GAGTC | 3 cut(s) | 188, 956, 1229 |
| ScrFI | CCNGG | 4 cut(s) | 35, 715, 1283, 1284 |
| SduI | GDGCHC | 7 cut(s) | 351, 556, 571, 585, 918, 1115, 1153 |
| SfaNI | GCATC | 3 cut(s) | 39, 369, 1302 |
| SfcI | CTRYAG | 1 cut(s) | 142 |
| Sfr274I | CTCGAG | 2 cut(s) | 555, 943 |
| Sfr303I | CCGCGG | 2 cut(s) | 300, 345 |
| SgrBI | CCGCGG | 2 cut(s) | 300, 345 |
| SinI | GGWCC | 3 cut(s) | 597, 626, 754 |
| SlaI | CTCGAG | 2 cut(s) | 555, 943 |
| SmaI | CCCGGG | 1 cut(s) | 1284 |
| SmlI | CTYRAG | 3 cut(s) | 555, 943, 1075 |
| SmoI | CTYRAG | 3 cut(s) | 555, 943, 1075 |
| Sse9I | AATT | 5 cut(s) | 366, 396, 644, 762, 1099 |
| SspMI | CTAG | 1 cut(s) | 1047 |
| SstI | GAGCTC | 3 cut(s) | 556, 585, 918 |
| StyD4I | CCNGG | 4 cut(s) | 33, 713, 1281, 1282 |
| TaaI | ACNGT | 2 cut(s) | 353, 983 |
| TaiI | ACGT | 1 cut(s) | 1247 |
| TaqI | TCGA | 5 cut(s) | 213, 556, 759, 944, 1223 |
| TasI | AATT | 5 cut(s) | 366, 396, 644, 762, 1099 |
| TatI | WGTACW | 2 cut(s) | 671, 1232 |
| TfiI | GAWTC | 1 cut(s) | 1118 |
| Tru1I | TTAA | 2 cut(s) | 446, 1076 |
| Tru9I | TTAA | 2 cut(s) | 446, 1076 |
| TscAI | CASTG | 2 cut(s) | 979, 1120 |
| TseI | GCWGC | 3 cut(s) | 242, 318, 404 |
| TspDTI | ATGAA | 3 cut(s) | 753, 996, 1196 |
| TspMI | CCCGGG | 1 cut(s) | 1282 |
| TspRI | CASTG | 2 cut(s) | 979, 1120 |
| Tth111I | GACNNNGTC | 2 cut(s) | 209, 752 |
| Vha464I | CTTAAG | 1 cut(s) | 1075 |
| VneI | GTGCAC | 2 cut(s) | 347, 1111 |
| VpaK11BI | GGWCC | 3 cut(s) | 597, 626, 754 |
| XapI | RAATTY | 3 cut(s) | 366, 396, 644 |
| XbaI | TCTAGA | 1 cut(s) | 1046 |
| XhoI | CTCGAG | 2 cut(s) | 555, 943 |
| XmaI | CCCGGG | 1 cut(s) | 1282 |
| XmiI | GTMKAC | 2 cut(s) | 213, 1181 |
| XspI | CTAG | 1 cut(s) | 1047 |
| ZraI | GACGTC | 1 cut(s) | 1245 |