Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8081240.1

Orthogroup ID

OG0010781

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 233

Gene Structure 233 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8081240.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 233 bp

tgcgtgcattaaaaggattggtgaggcttcaagctctggttagaggtcatattgagaggaagaagtgggctaagcggtaccagcggtttcaagcaatattgcgagcgcaggccagagctcgagcagggcggacccagatctcagagttctcacattcacattcaagttcccaatcttctcagattcaccaacctgtaagcaaattttccttttccctccgagttttcaaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005856 GO:0005875 GO:0005886 GO:0015630 GO:0016020 GO:0032991 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4005 IQ

Protein Analysis

76

Amino Acids

8.85

Weight (kDa)

12.0

Isoelectric Point (pI)

56.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010781)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G23060
fragaria_vesca	FvH4_5g01680 FvH4_5g01680 FvH4_5g01680
malus_domestica	MD04G1065600.v1.1
prunus_persica	Prupe.5G092600_v2.0.a1
pyrus_communis	pycom04g05910 pycom06g07330
rosa_chinensis	RchiOBHm_Chr7g0199041
rosa_laevigata	RLG00000003820
rosa_multiflora	Rmu_co8081240.1_g000001 Rmu_sc0006266.1_g000033 Rmu_sc0007328.1_g000001
rosa_roxburghii	Rroxscaffold_3G00257190
rosa_rugosa	Rorug07G0052200
rosa_samantha	Rh7AG175400 Rh7BG178800 Rh7CG184600 Rh7DG178200
rosa_wichuraiana	Rw7G015390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	77
AccB1I	GGYRCC	1 cut(s)	77
AciI	CCGC	3 cut(s)	75, 84, 129
AcsI	RAATTY	1 cut(s)	202
AfaI	GTAC	1 cut(s)	79
AgsI	TTSAA	4 cut(s)	31, 91, 164, 228
AluBI	AGCT	2 cut(s)	34, 118
AluI	AGCT	2 cut(s)	34, 118
Alw21I	GWGCWC	1 cut(s)	120
Ama87I	CYCGRG	1 cut(s)	119
AoxI	GGCC	1 cut(s)	110
ApoI	RAATTY	1 cut(s)	202
Asp718I	GGTACC	1 cut(s)	77
AspLEI	GCGC	1 cut(s)	108
AspS9I	GGNCC	1 cut(s)	131
AsuHPI	GGTGA	2 cut(s)	33, 178
AvaI	CYCGRG	1 cut(s)	119
AvaII	GGWCC	1 cut(s)	131
BanI	GGYRCC	1 cut(s)	77
BanII	GRGCYC	1 cut(s)	120
Bbv12I	GWGCWC	1 cut(s)	120
BglII	AGATCT	1 cut(s)	137
BlpI	GCTNAGC	1 cut(s)	71
Bme18I	GGWCC	1 cut(s)	131
BmeT110I	CYCGRG	1 cut(s)	119
BmgT120I	GGNCC	1 cut(s)	131
BmiI	GGNNCC	2 cut(s)	79, 133
Bpu1102I	GCTNAGC	1 cut(s)	71
BseMII	CTCAG	2 cut(s)	155, 193
BshFI	GGCC	1 cut(s)	112
BshNI	GGYRCC	1 cut(s)	77
BsiHKAI	GWGCWC	1 cut(s)	120
BsiHKCI	CYCGRG	1 cut(s)	119
BsnI	GGCC	1 cut(s)	112
BsoBI	CYCGRG	1 cut(s)	119
Bsp1286I	GDGCHC	1 cut(s)	120
Bsp143I	GATC	1 cut(s)	137
Bsp1720I	GCTNAGC	1 cut(s)	71
BspACI	CCGC	3 cut(s)	75, 84, 129
BspANI	GGCC	1 cut(s)	112
BspCNI	CTCAG	2 cut(s)	154, 192
BspLI	GGNNCC	2 cut(s)	79, 133
BspT107I	GGYRCC	1 cut(s)	77
BssMI	GATC	1 cut(s)	137
BstC8I	GCNNGC	3 cut(s)	5, 104, 110
BstDEI	CTNAG	3 cut(s)	71, 141, 179
BstHHI	GCGC	1 cut(s)	108
BstKTI	GATC	1 cut(s)	140
BstMBI	GATC	1 cut(s)	137
BstMWI	GCNNNNNNNGC	1 cut(s)	81
BstX2I	RGATCY	1 cut(s)	137
BstYI	RGATCY	1 cut(s)	137
BsuRI	GGCC	1 cut(s)	112
Cac8I	GCNNGC	3 cut(s)	5, 104, 110
CfoI	GCGC	1 cut(s)	108
Cfr13I	GGNCC	1 cut(s)	131
Csp6I	GTAC	1 cut(s)	78
CviJI	RGCY	5 cut(s)	27, 34, 70, 112, 118
CviKI_1	RGCY	5 cut(s)	27, 34, 70, 112, 118
CviQI	GTAC	1 cut(s)	78
DdeI	CTNAG	3 cut(s)	71, 141, 179
DpnI	GATC	1 cut(s)	139
DpnII	GATC	1 cut(s)	137
EciI	GGCGGA	1 cut(s)	144
Ecl136II	GAGCTC	1 cut(s)	118
Eco24I	GRGCYC	1 cut(s)	120
Eco47I	GGWCC	1 cut(s)	131
Eco53kI	GAGCTC	1 cut(s)	118
Eco88I	CYCGRG	1 cut(s)	119
EcoICRI	GAGCTC	1 cut(s)	118
EcoT38I	GRGCYC	1 cut(s)	120
FaiI	YATR	1 cut(s)	50
FriOI	GRGCYC	1 cut(s)	120
GlaI	GCGC	1 cut(s)	107
HaeIII	GGCC	1 cut(s)	112
HhaI	GCGC	1 cut(s)	108
Hin6I	GCGC	1 cut(s)	106
HinP1I	GCGC	1 cut(s)	106
HinfI	GANTC	1 cut(s)	183
HphI	GGTGA	2 cut(s)	33, 178
Hpy188I	TCNGA	3 cut(s)	144, 182, 220
HpyCH4V	TGCA	1 cut(s)	7
HpyF10VI	GCNNNNNNNGC	1 cut(s)	81
HpyF3I	CTNAG	3 cut(s)	71, 141, 179
HspAI	GCGC	1 cut(s)	106
KpnI	GGTACC	1 cut(s)	81
Kzo9I	GATC	1 cut(s)	137
LpnPI	CCDG	7 cut(s)	22, 94, 94, 110, 126, 148, 206
MalI	GATC	1 cut(s)	139
MboI	GATC	1 cut(s)	137
MboII	GAAGA	2 cut(s)	72, 167
MflI	RGATCY	1 cut(s)	137
MhlI	GDGCHC	1 cut(s)	120
MluCI	AATT	1 cut(s)	202
MnlI	CCTC	4 cut(s)	17, 37, 50, 226
MseI	TTAA	1 cut(s)	10
MspA1I	CMGCKG	1 cut(s)	84
MwoI	GCNNNNNNNGC	1 cut(s)	81
NdeII	GATC	1 cut(s)	137
NlaIV	GGNNCC	2 cut(s)	79, 133
PaeR7I	CTCGAG	1 cut(s)	119
PfeI	GAWTC	1 cut(s)	183
Psp124BI	GAGCTC	1 cut(s)	120
PspN4I	GGNNCC	2 cut(s)	79, 133
PspPI	GGNCC	1 cut(s)	131
PspXI	VCTCGAGB	1 cut(s)	119
PsuI	RGATCY	1 cut(s)	137
RsaI	GTAC	1 cut(s)	79
RsaNI	GTAC	1 cut(s)	78
SacI	GAGCTC	1 cut(s)	120
SaqAI	TTAA	1 cut(s)	10
Sau3AI	GATC	1 cut(s)	137
Sau96I	GGNCC	1 cut(s)	131
SduI	GDGCHC	1 cut(s)	120
SetI	ASST	4 cut(s)	36, 48, 120, 195
Sfr274I	CTCGAG	1 cut(s)	119
SinI	GGWCC	1 cut(s)	131
SlaI	CTCGAG	1 cut(s)	119
SmlI	CTYRAG	1 cut(s)	119
SmoI	CTYRAG	1 cut(s)	119
Sse9I	AATT	1 cut(s)	202
SsiI	CCGC	3 cut(s)	75, 84, 129
SspI	AATATT	1 cut(s)	98
SstI	GAGCTC	1 cut(s)	120
TaqI	TCGA	1 cut(s)	120
TasI	AATT	1 cut(s)	202
TfiI	GAWTC	1 cut(s)	183
Tru1I	TTAA	1 cut(s)	10
Tru9I	TTAA	1 cut(s)	10
VpaK11BI	GGWCC	1 cut(s)	131
XapI	RAATTY	1 cut(s)	202
XhoI	CTCGAG	1 cut(s)	119

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.