Rh7BG178800

iq-domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0010781
Physical Location & Seq
Reverse (-)
14114643 .. 14120055
5413 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG178800.1

Sequence Viewer

Length: 1062 bp
ATGTGTGATTGTGAAGCTGTGGTTTATTTGCTTCGTCTTGAGTTTGATAAATGGATACTTATTGTGAAGGCGAGGAGAGCATTGCGTGCATTAAAAGGACTGGTGAGGCTTCAAGCACTGGTTAGAGGTCATATTGAGAGGAAGAAGTGGGCTAAGCGGTACCAGCGGTTTCAAGCAATATTGCGAGCGCAGGCCAGAGCTCGAGCAGGGCGAACCCAGATCTCAGAGCTCTCACATTCACATTCAAGTTCCCAATCTTCTCAGATTCACCAACCTGGTCCTGCAACCCCTGAAAAATTTGAACATGGCCTTCGATCCAGGAGTACAAAACATGAACATTCATCAATACTCCGGAGAAATAGCTCAAGATCAAATGGTAGGATTATTGGTGATCATGACAGAGCTCACTCGGAACGATCATGGGAGCAACCAGGGTCTGCAGTGAAGAATGGCACTCCTGAGGATGAGAAGAACGACAAGGTCCTCGAAATCGATACTGGGAAACCCCATATTGCAGCTAAACGTAGAAATCTCTTCCACTCTACTCATCTTGCTGTCGCTTCAGACCAATACAGCCATAGCTTTACTACATCAAAGGACTCAACAACTCATCAGACACTTCCAAGTCCGTCTTCTTGTGAAGTCCAATCGTTAACCCCATTGAAATTCTCTAGAGAGCTGGAGGAAGACGCATTCTGCACAGCTAACAATAGCCCACAGTTTTATTCTGCTACTTCTTCAAGGGGTGGTAATTCAAAGAAAAGTCCTTTCACTCCCACAAAGAGCGACGGCTCGAAAAGTTACCTAAGTGGGTACTCAGATTACCCGAACTACATGGCATGCACTCAATCTTCAAAGGCTAAGCTGAGGTCACTTAGTGCTCCGAAGCAGAGGCCTCAGTATGAGAGGTCTAGTTCAGCAAAGAGGTACTCTGTAGGCTTTGGTGAATCAAGATCAAATGCACAAAGGAGTTCAGCCTTGCATTCAAACTTCACAAATAAAGCCTACCCAGGATCTGGTCGCTTGGACAAGCTTGGCATGCCTGTAGGTTACAGATACTAA

Protein Analysis

353

Amino Acids

39.59

Weight (kDa)

10.09

Isoelectric Point (pI)

67.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4005 PF13178 238 - 325 2e-09 Protein of unknown function (DUF4005)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010781)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G23060
fragaria_vesca FvH4_5g01680 FvH4_5g01680 FvH4_5g01680
malus_domestica MD04G1065600.v1.1
prunus_persica Prupe.5G092600_v2.0.a1
pyrus_communis pycom04g05910 pycom06g07330
rosa_chinensis RchiOBHm_Chr7g0199041
rosa_laevigata RLG00000003820
rosa_multiflora Rmu_co8081240.1_g000001 Rmu_sc0006266.1_g000033 Rmu_sc0007328.1_g000001
rosa_roxburghii Rroxscaffold_3G00257190
rosa_rugosa Rorug07G0052200
rosa_samantha Rh7AG175400 Rh7BG178800 Rh7CG184600 Rh7DG178200
rosa_wichuraiana Rw7G015390

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 159
AccB1I GGYRCC 1 cut(s) 159
AccB7I CCANNNNNTGG 1 cut(s) 1016
AccIII TCCGGA 1 cut(s) 351
AciI CCGC 2 cut(s) 157, 166
AclWI GGATC 2 cut(s) 309, 1021
AcsI RAATTY 2 cut(s) 296, 665
AcuI CTGAAG 1 cut(s) 546
AdeI CACNNNGTG 1 cut(s) 878
AfaI GTAC 4 cut(s) 161, 325, 815, 929
AfiI CCNNNNNNNGG 1 cut(s) 1016
AgsI TTSAA 9 cut(s) 113, 173, 246, 302, 664, 741, 756, 855, 987
AjnI CCWGG 4 cut(s) 274, 317, 430, 1009
AjuI GAANNNNNNNTTGG 2 cut(s) 616, 648
Alw21I GWGCWC 4 cut(s) 202, 231, 406, 883
AlwI GGATC 2 cut(s) 309, 1021
AlwNI CAGNNNCTG 2 cut(s) 437, 1016
Ama87I CYCGRG 1 cut(s) 201
Aor13HI TCCGGA 1 cut(s) 351
AoxI GGCC 3 cut(s) 192, 307, 893
ApeKI GCWGC 1 cut(s) 515
ApoI RAATTY 2 cut(s) 296, 665
Asp718I GGTACC 1 cut(s) 159
AspLEI GCGC 1 cut(s) 190
AspS9I GGNCC 2 cut(s) 278, 481
AsuHPI GGTGA 4 cut(s) 115, 260, 401, 956
AvaI CYCGRG 1 cut(s) 201
AvaII GGWCC 2 cut(s) 278, 481
AxyI CCTNAGG 1 cut(s) 459
BanI GGYRCC 1 cut(s) 159
BanII GRGCYC 3 cut(s) 202, 231, 406
BbsI GAAGAC 2 cut(s) 624, 693
Bbv12I GWGCWC 4 cut(s) 202, 231, 406, 883
BbvCI CCTCAGC 1 cut(s) 866
BbvI GCAGC 1 cut(s) 527
BceAI ACGGC 1 cut(s) 805
BciT130I CCWGG 4 cut(s) 276, 319, 432, 1011
BciVI GTATCC 1 cut(s) 48
BclI TGATCA 1 cut(s) 391
BfaI CTAG 2 cut(s) 672, 912
BfmI CTRYAG 3 cut(s) 438, 933, 1044
BfuI GTATCC 1 cut(s) 48
BglII AGATCT 1 cut(s) 219
BisI GCNGC 1 cut(s) 516
BlpI GCTNAGC 2 cut(s) 153, 861
BlsI GCNGC 1 cut(s) 517
Bme1390I CCNGG 4 cut(s) 276, 319, 432, 1011
Bme18I GGWCC 2 cut(s) 278, 481
BmeT110I CYCGRG 1 cut(s) 201
BmgT120I GGNCC 2 cut(s) 278, 481
BmiI GGNNCC 1 cut(s) 161
BmrFI CCNGG 4 cut(s) 276, 319, 432, 1011
BmrI ACTGGG 1 cut(s) 507
BmuI ACTGGG 1 cut(s) 507
BpiI GAAGAC 2 cut(s) 624, 693
BpmI CTGGAG 1 cut(s) 701
Bpu10I CCTNAGC 1 cut(s) 866
Bpu1102I GCTNAGC 2 cut(s) 153, 861
BpuEI CTTGAG 2 cut(s) 59, 349
Bsa29I ATCGAT 1 cut(s) 492
BsaJI CCNNGG 2 cut(s) 431, 1009
BsaWI WCCGGW 1 cut(s) 351
Bsc4I CCNNNNNNNGG 1 cut(s) 1016
Bse1I ACTGG 3 cut(s) 105, 123, 502
Bse21I CCTNAGG 1 cut(s) 459
Bse3DI GCAATG 1 cut(s) 80
BseAI TCCGGA 1 cut(s) 351
BseBI CCWGG 4 cut(s) 276, 319, 432, 1011
BseCI ATCGAT 1 cut(s) 492
BseDI CCNNGG 2 cut(s) 431, 1009
BseGI GGATG 1 cut(s) 469
BseLI CCNNNNNNNGG 1 cut(s) 1016
BseMI GCAATG 1 cut(s) 80
BseMII CTCAG 6 cut(s) 237, 275, 450, 831, 857, 911
BseNI ACTGG 3 cut(s) 105, 123, 502
BseRI GAGGAG 1 cut(s) 88
BseXI GCAGC 1 cut(s) 527
BsgI GTGCAG 1 cut(s) 682
BshFI GGCC 3 cut(s) 194, 309, 895
BshNI GGYRCC 1 cut(s) 159
BshVI ATCGAT 1 cut(s) 492
BsiHKAI GWGCWC 4 cut(s) 202, 231, 406, 883
BsiHKCI CYCGRG 1 cut(s) 201
BsiSI CCGG 1 cut(s) 352
BslI CCNNNNNNNGG 1 cut(s) 1016
BsmI GAATGC 2 cut(s) 692, 982
BsnI GGCC 3 cut(s) 194, 309, 895
BsoBI CYCGRG 1 cut(s) 201
Bsp1286I GDGCHC 4 cut(s) 202, 231, 406, 883
Bsp13I TCCGGA 1 cut(s) 351
Bsp143I GATC 7 cut(s) 219, 314, 368, 391, 416, 953, 1013
Bsp1720I GCTNAGC 2 cut(s) 153, 861
BspACI CCGC 2 cut(s) 157, 166
BspANI GGCC 3 cut(s) 194, 309, 895
BspCNI CTCAG 6 cut(s) 236, 274, 451, 830, 858, 910
BspDI ATCGAT 1 cut(s) 492
BspEI TCCGGA 1 cut(s) 351
BspHI TCATGA 1 cut(s) 394
BspLI GGNNCC 1 cut(s) 161
BspMAI CTGCAG 1 cut(s) 442
BspPI GGATC 2 cut(s) 309, 1021
BspT107I GGYRCC 1 cut(s) 159
BsrDI GCAATG 1 cut(s) 80
BsrI ACTGG 3 cut(s) 105, 123, 502
BssECI CCNNGG 2 cut(s) 431, 1009
BssMI GATC 7 cut(s) 219, 314, 368, 391, 416, 953, 1013
Bst2UI CCWGG 4 cut(s) 276, 319, 432, 1011
Bst4CI ACNGT 1 cut(s) 720
Bst6I CTCTTC 1 cut(s) 539
BstAPI GCANNNNNTGC 1 cut(s) 86
BstC8I GCNNGC 5 cut(s) 87, 186, 192, 841, 1040
BstF5I GGATG 1 cut(s) 469
BstHHI GCGC 1 cut(s) 190
BstKTI GATC 7 cut(s) 222, 317, 371, 394, 419, 956, 1016
BstMBI GATC 7 cut(s) 219, 314, 368, 391, 416, 953, 1013
BstMWI GCNNNNNNNGC 4 cut(s) 77, 86, 163, 1039
BstNI CCWGG 4 cut(s) 276, 319, 432, 1011
BstNSI RCATGY 2 cut(s) 843, 1042
BstSCI CCNGG 4 cut(s) 274, 317, 430, 1009
BstSFI CTRYAG 3 cut(s) 438, 933, 1044
BstV1I GCAGC 1 cut(s) 527
BstV2I GAAGAC 2 cut(s) 624, 693
BstX2I RGATCY 2 cut(s) 219, 1013
BstYI RGATCY 2 cut(s) 219, 1013
Bsu15I ATCGAT 1 cut(s) 492
Bsu36I CCTNAGG 1 cut(s) 459
BsuI GTATCC 1 cut(s) 48
BsuRI GGCC 3 cut(s) 194, 309, 895
BsuTUI ATCGAT 1 cut(s) 492
BtsCI GGATG 1 cut(s) 469
BtsI GCAGTG 1 cut(s) 447
BtsIMutI CAGTG 2 cut(s) 116, 447
Cac8I GCNNGC 5 cut(s) 87, 186, 192, 841, 1040
CaiI CAGNNNCTG 2 cut(s) 437, 1016
CciI TCATGA 1 cut(s) 394
CfoI GCGC 1 cut(s) 190
Cfr13I GGNCC 2 cut(s) 278, 481
ClaI ATCGAT 1 cut(s) 492
CseI GACGC 1 cut(s) 698
CsiI ACCWGGT 1 cut(s) 274
Csp6I GTAC 4 cut(s) 160, 324, 814, 928
CviAII CATG 7 cut(s) 305, 332, 395, 420, 835, 840, 1039
CviQI GTAC 4 cut(s) 160, 324, 814, 928
DpnI GATC 7 cut(s) 221, 316, 370, 393, 418, 955, 1015
DpnII GATC 7 cut(s) 219, 314, 368, 391, 416, 953, 1013
DraIII CACNNNGTG 1 cut(s) 878
Eam1104I CTCTTC 1 cut(s) 539
EarI CTCTTC 1 cut(s) 539
Ecl136II GAGCTC 3 cut(s) 200, 229, 404
Eco147I AGGCCT 1 cut(s) 895
Eco24I GRGCYC 3 cut(s) 202, 231, 406
Eco47I GGWCC 2 cut(s) 278, 481
Eco53kI GAGCTC 3 cut(s) 200, 229, 404
Eco57I CTGAAG 1 cut(s) 546
Eco81I CCTNAGG 1 cut(s) 459
Eco88I CYCGRG 1 cut(s) 201
EcoICRI GAGCTC 3 cut(s) 200, 229, 404
EcoO109I RGGNCCY 1 cut(s) 481
EcoRII CCWGG 4 cut(s) 274, 317, 430, 1009
EcoT38I GRGCYC 3 cut(s) 202, 231, 406
FaeI CATG 7 cut(s) 308, 335, 398, 423, 838, 843, 1042
FalI AAGNNNNNCTT 2 cut(s) 616, 648
FatI CATG 7 cut(s) 304, 331, 394, 419, 834, 839, 1038
FbaI TGATCA 1 cut(s) 391
Fnu4HI GCNGC 1 cut(s) 516
FokI GGATG 1 cut(s) 476
FriOI GRGCYC 3 cut(s) 202, 231, 406
Fsp4HI GCNGC 1 cut(s) 516
FspBI CTAG 2 cut(s) 672, 912
GlaI GCGC 1 cut(s) 189
GluI GCNGC 1 cut(s) 516
GsuI CTGGAG 1 cut(s) 701
HaeIII GGCC 3 cut(s) 194, 309, 895
HapII CCGG 1 cut(s) 352
HgaI GACGC 1 cut(s) 698
HhaI GCGC 1 cut(s) 190
Hin1II CATG 7 cut(s) 308, 335, 398, 423, 838, 843, 1042
Hin6I GCGC 1 cut(s) 188
HinP1I GCGC 1 cut(s) 188
HincII GTYRAC 1 cut(s) 654
HindII GTYRAC 1 cut(s) 654
HindIII AAGCTT 1 cut(s) 1031
HinfI GANTC 3 cut(s) 265, 599, 947
HpaI GTTAAC 1 cut(s) 654
HpaII CCGG 1 cut(s) 352
HphI GGTGA 4 cut(s) 115, 260, 401, 956
Hpy166II GTNNAC 1 cut(s) 654
Hpy188I TCNGA 7 cut(s) 226, 264, 412, 565, 615, 820, 885
Hpy188III TCNNGA 7 cut(s) 38, 352, 366, 395, 458, 672, 951
Hpy8I GTNNAC 1 cut(s) 654
Hpy99I CGWCG 1 cut(s) 791
HpyAV CCTTC 2 cut(s) 61, 320
HpyCH4III ACNGT 1 cut(s) 720
HpyCH4IV ACGT 1 cut(s) 523
HpyCH4V TGCA 8 cut(s) 89, 284, 440, 515, 699, 843, 962, 982
HpyF10VI GCNNNNNNNGC 4 cut(s) 77, 86, 163, 1039
HpySE526I ACGT 1 cut(s) 523
Hsp92II CATG 7 cut(s) 308, 335, 398, 423, 838, 843, 1042
HspAI GCGC 1 cut(s) 188
Kpn2I TCCGGA 1 cut(s) 351
KpnI GGTACC 1 cut(s) 163
Ksp22I TGATCA 1 cut(s) 391
KspAI GTTAAC 1 cut(s) 654
Kzo9I GATC 7 cut(s) 219, 314, 368, 391, 416, 953, 1013
LmnI GCTCC 2 cut(s) 424, 886
Lsp1109I GCAGC 1 cut(s) 527
MabI ACCWGGT 1 cut(s) 274
MaeI CTAG 2 cut(s) 672, 912
MaeII ACGT 1 cut(s) 523
MaeIII GTNAC 3 cut(s) 800, 870, 1049
MalI GATC 7 cut(s) 221, 316, 370, 393, 418, 955, 1015
MboI GATC 7 cut(s) 219, 314, 368, 391, 416, 953, 1013
MboII GAAGA 9 cut(s) 154, 249, 457, 481, 526, 624, 698, 729, 843
MflI RGATCY 2 cut(s) 219, 1013
MhlI GDGCHC 4 cut(s) 202, 231, 406, 883
MluCI AATT 3 cut(s) 296, 665, 751
MlyI GAGTC 1 cut(s) 593
MroI TCCGGA 1 cut(s) 351
MseI TTAA 2 cut(s) 92, 653
MspA1I CMGCKG 1 cut(s) 166
MspI CCGG 1 cut(s) 352
MspR9I CCNGG 4 cut(s) 276, 319, 432, 1011
Mva1269I GAATGC 2 cut(s) 692, 982
MvaI CCWGG 4 cut(s) 276, 319, 432, 1011
MwoI GCNNNNNNNGC 4 cut(s) 77, 86, 163, 1039
NdeII GATC 7 cut(s) 219, 314, 368, 391, 416, 953, 1013
NlaIII CATG 7 cut(s) 308, 335, 398, 423, 838, 843, 1042
NlaIV GGNNCC 1 cut(s) 161
NmuCI GTSAC 1 cut(s) 870
NspI RCATGY 2 cut(s) 843, 1042
PaeI GCATGC 2 cut(s) 843, 1042
PaeR7I CTCGAG 1 cut(s) 201
PagI TCATGA 1 cut(s) 394
PceI AGGCCT 1 cut(s) 895
PcsI WCGNNNNNNNCGW 1 cut(s) 208
PctI GAATGC 2 cut(s) 692, 982
PfeI GAWTC 2 cut(s) 265, 947
PflFI GACNNNGTC 1 cut(s) 479
PflMI CCANNNNNTGG 1 cut(s) 1016
PfoI TCCNGGA 1 cut(s) 317
PkrI GCNGC 1 cut(s) 517
PleI GAGTC 1 cut(s) 593
PpsI GAGTC 1 cut(s) 593
PpuMI RGGWCCY 1 cut(s) 481
Psp124BI GAGCTC 3 cut(s) 202, 231, 406
Psp5II RGGWCCY 1 cut(s) 481
Psp6I CCWGG 4 cut(s) 274, 317, 430, 1009
PspGI CCWGG 4 cut(s) 274, 317, 430, 1009
PspN4I GGNNCC 1 cut(s) 161
PspPI GGNCC 2 cut(s) 278, 481
PspPPI RGGWCCY 1 cut(s) 481
PspXI VCTCGAGB 1 cut(s) 201
PstI CTGCAG 1 cut(s) 442
PstNI CAGNNNCTG 2 cut(s) 437, 1016
PsuI RGATCY 2 cut(s) 219, 1013
PsyI GACNNNGTC 1 cut(s) 479
RsaI GTAC 4 cut(s) 161, 325, 815, 929
RsaNI GTAC 4 cut(s) 160, 324, 814, 928
SacI GAGCTC 3 cut(s) 202, 231, 406
SaqAI TTAA 2 cut(s) 92, 653
SatI GCNGC 1 cut(s) 516
Sau3AI GATC 7 cut(s) 219, 314, 368, 391, 416, 953, 1013
Sau96I GGNCC 2 cut(s) 278, 481
SchI GAGTC 1 cut(s) 593
ScrFI CCNGG 4 cut(s) 276, 319, 432, 1011
SduI GDGCHC 4 cut(s) 202, 231, 406, 883
SexAI ACCWGGT 1 cut(s) 274
SfcI CTRYAG 3 cut(s) 438, 933, 1044
Sfr274I CTCGAG 1 cut(s) 201
SinI GGWCC 2 cut(s) 278, 481
SlaI CTCGAG 1 cut(s) 201
SmlI CTYRAG 3 cut(s) 38, 201, 364
SmoI CTYRAG 3 cut(s) 38, 201, 364
SphI GCATGC 2 cut(s) 843, 1042
Sse9I AATT 3 cut(s) 296, 665, 751
SseBI AGGCCT 1 cut(s) 895
SsiI CCGC 2 cut(s) 157, 166
SspI AATATT 1 cut(s) 180
SspMI CTAG 2 cut(s) 672, 912
SstI GAGCTC 3 cut(s) 202, 231, 406
StuI AGGCCT 1 cut(s) 895
StyD4I CCNGG 4 cut(s) 274, 317, 430, 1009
TaaI ACNGT 1 cut(s) 720
TaiI ACGT 1 cut(s) 526
TaqI TCGA 5 cut(s) 202, 313, 486, 492, 794
TasI AATT 3 cut(s) 296, 665, 751
TatI WGTACW 1 cut(s) 323
TfiI GAWTC 2 cut(s) 265, 947
Tru1I TTAA 2 cut(s) 92, 653
Tru9I TTAA 2 cut(s) 92, 653
TscAI CASTG 2 cut(s) 123, 447
TseFI GTSAC 1 cut(s) 870
TseI GCWGC 1 cut(s) 515
Tsp45I GTSAC 1 cut(s) 870
TspDTI ATGAA 2 cut(s) 330, 348
TspGWI ACGGA 1 cut(s) 618
TspRI CASTG 2 cut(s) 123, 447
Tth111I GACNNNGTC 1 cut(s) 479
Van91I CCANNNNNTGG 1 cut(s) 1016
VpaK11BI GGWCC 2 cut(s) 278, 481
XapI RAATTY 2 cut(s) 296, 665
XbaI TCTAGA 1 cut(s) 671
XceI RCATGY 2 cut(s) 843, 1042
XhoI CTCGAG 1 cut(s) 201
XspI CTAG 2 cut(s) 672, 912
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.