Rh7DG178200

iq-domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0010781
Physical Location & Seq
Reverse (-)
16395178 .. 16401302
6125 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG178200.1

Sequence Viewer

Length: 1059 bp
ATGTGTGAATGTGAAGCTGTGGTTTATATGCTTCGTCTTGAGTTTGATAAATGGATACTTATTGTGAAGGCGAGGAGAGCATTGCGTGCATTAAAAGGATTGGTGAGGCTTCAAGCTCTGGTTAGAGGTCATATTGAGAGGAAGAAGTGGGCTAAGCGGTACCAGCGGTTTCAAGCAATATTGCGAGCGCAGGCCAGAGCTCGAGCAGGGCGGACCCAGATCTCAGAGTTCTCACATTCACATTCAAGTTCCCAATCTTCTCAGATTCACCAACCTGGTCCTGCAACCCCGGAAAAATTTGAACATGGCCTTCGATCCAGGAGTACAAAACATGAACATTCATCAATACTTGGGAGAAATAGCTCAAGATCAAATGGTAGGATTATTGGTGATCATGACAGAGCTCACTCGGAACGATCATGGGAGCAACCAGGGTCTGCAGTGAAGAATGGCACTCCTGAGGATGAGAAGAACGACAGGGTCCTCGAAATCGATACTGGGAAACCCCATATTGCAGCTAAACGTAGAAACCTCTTCCACTCTACTCATCTCGCTTCAGACCAATACAGCCATAGCTTTACTACATCAAAGGACTCAACAACTCATCAGACACTTCCAAGTCCGTCTTCTTGTGAAGTCCAATCGTTAACCCCATTGAAATTCTCTAGAGAGCTGGAGGAAGACGCATTCTGCACAGCTAACAATAGCCCACAGTTTTATTCTGCTACTTCTTCAAGGGGTGGTAATTCAAAGAAAAGTCCTTTCACTCCCACAAAGAGCGATGGCTCGAAAAGTTACCTAAGTGGGTACTCAGATTACCCGAACTACATGGCATGCACTCAATCTTCAAAGGCTAAGCTGAGGTCACTTAGTGCTCCGAAGCAGAGGCCTCAGTATGAGAGGTCTAGTTCAGCAAAGAGGTACTCTGTTCATGGCTTTGGCGAATCAAGATCAAATGCACAAAGGAGTTCAGCCTTGCATTCAAACTTCACAAATAAAGCCTACCCAGGATCTGGTCGCTTGGACAAGCTTGGCATGCCTGTAGGTTACAGATACTAA

Protein Analysis

352

Amino Acids

39.55

Weight (kDa)

10.07

Isoelectric Point (pI)

67.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4005 PF13178 236 - 321 3.1e-09 Protein of unknown function (DUF4005)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010781)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G23060
fragaria_vesca FvH4_5g01680 FvH4_5g01680 FvH4_5g01680
malus_domestica MD04G1065600.v1.1
prunus_persica Prupe.5G092600_v2.0.a1
pyrus_communis pycom04g05910 pycom06g07330
rosa_chinensis RchiOBHm_Chr7g0199041
rosa_laevigata RLG00000003820
rosa_multiflora Rmu_co8081240.1_g000001 Rmu_sc0006266.1_g000033 Rmu_sc0007328.1_g000001
rosa_roxburghii Rroxscaffold_3G00257190
rosa_rugosa Rorug07G0052200
rosa_samantha Rh7AG175400 Rh7BG178800 Rh7CG184600 Rh7DG178200
rosa_wichuraiana Rw7G015390

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 159
AccB1I GGYRCC 1 cut(s) 159
AccB7I CCANNNNNTGG 1 cut(s) 1013
AciI CCGC 3 cut(s) 157, 166, 211
AclWI GGATC 2 cut(s) 309, 1018
AcsI RAATTY 2 cut(s) 296, 659
AcuI CTGAAG 1 cut(s) 540
AdeI CACNNNGTG 1 cut(s) 872
AfaI GTAC 4 cut(s) 161, 325, 809, 923
AfiI CCNNNNNNNGG 1 cut(s) 1013
AgsI TTSAA 9 cut(s) 113, 173, 246, 302, 658, 735, 750, 849, 984
AjnI CCWGG 4 cut(s) 274, 317, 430, 1006
AjuI GAANNNNNNNTTGG 2 cut(s) 610, 642
Alw21I GWGCWC 3 cut(s) 202, 406, 877
AlwI GGATC 2 cut(s) 309, 1018
AlwNI CAGNNNCTG 2 cut(s) 437, 1013
Ama87I CYCGRG 1 cut(s) 201
AoxI GGCC 3 cut(s) 192, 307, 887
ApeKI GCWGC 1 cut(s) 515
ApoI RAATTY 2 cut(s) 296, 659
Asp718I GGTACC 1 cut(s) 159
AspLEI GCGC 1 cut(s) 190
AspS9I GGNCC 3 cut(s) 213, 278, 481
AsuC2I CCSGG 1 cut(s) 290
AsuHPI GGTGA 3 cut(s) 115, 260, 401
AvaI CYCGRG 1 cut(s) 201
AvaII GGWCC 3 cut(s) 213, 278, 481
AxyI CCTNAGG 1 cut(s) 459
BanI GGYRCC 1 cut(s) 159
BanII GRGCYC 2 cut(s) 202, 406
BbsI GAAGAC 2 cut(s) 618, 687
Bbv12I GWGCWC 3 cut(s) 202, 406, 877
BbvCI CCTCAGC 1 cut(s) 860
BbvI GCAGC 1 cut(s) 527
BccI CCATC 1 cut(s) 776
BciT130I CCWGG 4 cut(s) 276, 319, 432, 1008
BciVI GTATCC 1 cut(s) 48
BclI TGATCA 1 cut(s) 391
BcnI CCSGG 1 cut(s) 290
BfaI CTAG 2 cut(s) 666, 906
BfmI CTRYAG 2 cut(s) 438, 1041
BfuI GTATCC 1 cut(s) 48
BglII AGATCT 1 cut(s) 219
BisI GCNGC 1 cut(s) 516
BlpI GCTNAGC 2 cut(s) 153, 855
BlsI GCNGC 1 cut(s) 517
Bme1390I CCNGG 5 cut(s) 276, 290, 319, 432, 1008
Bme18I GGWCC 3 cut(s) 213, 278, 481
BmeT110I CYCGRG 1 cut(s) 201
BmgT120I GGNCC 3 cut(s) 213, 278, 481
BmiI GGNNCC 3 cut(s) 161, 215, 482
BmrFI CCNGG 5 cut(s) 276, 290, 319, 432, 1008
BmrI ACTGGG 1 cut(s) 507
BmuI ACTGGG 1 cut(s) 507
BpiI GAAGAC 2 cut(s) 618, 687
BpmI CTGGAG 1 cut(s) 695
Bpu10I CCTNAGC 1 cut(s) 860
Bpu1102I GCTNAGC 2 cut(s) 153, 855
BpuEI CTTGAG 2 cut(s) 59, 349
BpuMI CCSGG 1 cut(s) 290
Bsa29I ATCGAT 1 cut(s) 492
BsaJI CCNNGG 3 cut(s) 288, 431, 1006
Bsc4I CCNNNNNNNGG 1 cut(s) 1013
Bse1I ACTGG 1 cut(s) 502
Bse21I CCTNAGG 1 cut(s) 459
Bse3DI GCAATG 1 cut(s) 80
BseBI CCWGG 4 cut(s) 276, 319, 432, 1008
BseCI ATCGAT 1 cut(s) 492
BseDI CCNNGG 3 cut(s) 288, 431, 1006
BseGI GGATG 1 cut(s) 469
BseLI CCNNNNNNNGG 1 cut(s) 1013
BseMI GCAATG 1 cut(s) 80
BseMII CTCAG 6 cut(s) 237, 275, 450, 825, 851, 905
BseNI ACTGG 1 cut(s) 502
BseRI GAGGAG 1 cut(s) 88
BseXI GCAGC 1 cut(s) 527
BsgI GTGCAG 1 cut(s) 676
BshFI GGCC 3 cut(s) 194, 309, 889
BshNI GGYRCC 1 cut(s) 159
BshVI ATCGAT 1 cut(s) 492
BsiHKAI GWGCWC 3 cut(s) 202, 406, 877
BsiHKCI CYCGRG 1 cut(s) 201
BsiSI CCGG 1 cut(s) 290
BslI CCNNNNNNNGG 1 cut(s) 1013
BsmI GAATGC 2 cut(s) 686, 979
BsnI GGCC 3 cut(s) 194, 309, 889
BsoBI CYCGRG 1 cut(s) 201
Bsp1286I GDGCHC 3 cut(s) 202, 406, 877
Bsp143I GATC 7 cut(s) 219, 314, 368, 391, 416, 950, 1010
Bsp1720I GCTNAGC 2 cut(s) 153, 855
BspACI CCGC 3 cut(s) 157, 166, 211
BspANI GGCC 3 cut(s) 194, 309, 889
BspCNI CTCAG 6 cut(s) 236, 274, 451, 824, 852, 904
BspDI ATCGAT 1 cut(s) 492
BspHI TCATGA 1 cut(s) 394
BspLI GGNNCC 3 cut(s) 161, 215, 482
BspMAI CTGCAG 1 cut(s) 442
BspPI GGATC 2 cut(s) 309, 1018
BspT107I GGYRCC 1 cut(s) 159
BsrDI GCAATG 1 cut(s) 80
BsrI ACTGG 1 cut(s) 502
BssECI CCNNGG 3 cut(s) 288, 431, 1006
BssMI GATC 7 cut(s) 219, 314, 368, 391, 416, 950, 1010
Bst2UI CCWGG 4 cut(s) 276, 319, 432, 1008
Bst4CI ACNGT 1 cut(s) 714
Bst6I CTCTTC 1 cut(s) 539
BstAPI GCANNNNNTGC 1 cut(s) 86
BstC8I GCNNGC 5 cut(s) 87, 186, 192, 835, 1037
BstF5I GGATG 1 cut(s) 469
BstHHI GCGC 1 cut(s) 190
BstKTI GATC 7 cut(s) 222, 317, 371, 394, 419, 953, 1013
BstMBI GATC 7 cut(s) 219, 314, 368, 391, 416, 950, 1010
BstMWI GCNNNNNNNGC 4 cut(s) 77, 86, 163, 1036
BstNI CCWGG 4 cut(s) 276, 319, 432, 1008
BstNSI RCATGY 2 cut(s) 837, 1039
BstSCI CCNGG 5 cut(s) 274, 288, 317, 430, 1006
BstSFI CTRYAG 2 cut(s) 438, 1041
BstV1I GCAGC 1 cut(s) 527
BstV2I GAAGAC 2 cut(s) 618, 687
BstX2I RGATCY 2 cut(s) 219, 1010
BstYI RGATCY 2 cut(s) 219, 1010
Bsu15I ATCGAT 1 cut(s) 492
Bsu36I CCTNAGG 1 cut(s) 459
BsuI GTATCC 1 cut(s) 48
BsuRI GGCC 3 cut(s) 194, 309, 889
BsuTUI ATCGAT 1 cut(s) 492
BtgZI GCGATG 1 cut(s) 795
BtsCI GGATG 1 cut(s) 469
BtsI GCAGTG 1 cut(s) 447
BtsIMutI CAGTG 1 cut(s) 447
Cac8I GCNNGC 5 cut(s) 87, 186, 192, 835, 1037
CaiI CAGNNNCTG 2 cut(s) 437, 1013
CciI TCATGA 1 cut(s) 394
CfoI GCGC 1 cut(s) 190
Cfr13I GGNCC 3 cut(s) 213, 278, 481
ClaI ATCGAT 1 cut(s) 492
CseI GACGC 1 cut(s) 692
CsiI ACCWGGT 1 cut(s) 274
Csp6I GTAC 4 cut(s) 160, 324, 808, 922
CviAII CATG 8 cut(s) 305, 332, 395, 420, 829, 834, 932, 1036
CviQI GTAC 4 cut(s) 160, 324, 808, 922
DpnI GATC 7 cut(s) 221, 316, 370, 393, 418, 952, 1012
DpnII GATC 7 cut(s) 219, 314, 368, 391, 416, 950, 1010
DraIII CACNNNGTG 1 cut(s) 872
Eam1104I CTCTTC 1 cut(s) 539
EarI CTCTTC 1 cut(s) 539
EciI GGCGGA 1 cut(s) 226
Ecl136II GAGCTC 2 cut(s) 200, 404
Eco147I AGGCCT 1 cut(s) 889
Eco24I GRGCYC 2 cut(s) 202, 406
Eco47I GGWCC 3 cut(s) 213, 278, 481
Eco53kI GAGCTC 2 cut(s) 200, 404
Eco57I CTGAAG 1 cut(s) 540
Eco81I CCTNAGG 1 cut(s) 459
Eco88I CYCGRG 1 cut(s) 201
EcoICRI GAGCTC 2 cut(s) 200, 404
EcoO109I RGGNCCY 1 cut(s) 481
EcoRII CCWGG 4 cut(s) 274, 317, 430, 1006
EcoT38I GRGCYC 2 cut(s) 202, 406
FaeI CATG 8 cut(s) 308, 335, 398, 423, 832, 837, 935, 1039
FalI AAGNNNNNCTT 2 cut(s) 610, 642
FatI CATG 8 cut(s) 304, 331, 394, 419, 828, 833, 931, 1035
FbaI TGATCA 1 cut(s) 391
Fnu4HI GCNGC 1 cut(s) 516
FokI GGATG 1 cut(s) 476
FriOI GRGCYC 2 cut(s) 202, 406
Fsp4HI GCNGC 1 cut(s) 516
FspBI CTAG 2 cut(s) 666, 906
GlaI GCGC 1 cut(s) 189
GluI GCNGC 1 cut(s) 516
GsuI CTGGAG 1 cut(s) 695
HaeIII GGCC 3 cut(s) 194, 309, 889
HapII CCGG 1 cut(s) 290
HgaI GACGC 1 cut(s) 692
HhaI GCGC 1 cut(s) 190
Hin1II CATG 8 cut(s) 308, 335, 398, 423, 832, 837, 935, 1039
Hin6I GCGC 1 cut(s) 188
HinP1I GCGC 1 cut(s) 188
HincII GTYRAC 1 cut(s) 648
HindII GTYRAC 1 cut(s) 648
HindIII AAGCTT 1 cut(s) 1028
HinfI GANTC 3 cut(s) 265, 593, 944
HpaI GTTAAC 1 cut(s) 648
HpaII CCGG 1 cut(s) 290
HphI GGTGA 3 cut(s) 115, 260, 401
Hpy166II GTNNAC 1 cut(s) 648
Hpy188I TCNGA 7 cut(s) 226, 264, 412, 559, 609, 814, 879
Hpy188III TCNNGA 6 cut(s) 38, 366, 395, 458, 666, 948
Hpy8I GTNNAC 1 cut(s) 648
HpyAV CCTTC 2 cut(s) 61, 320
HpyCH4III ACNGT 1 cut(s) 714
HpyCH4IV ACGT 1 cut(s) 523
HpyCH4V TGCA 8 cut(s) 89, 284, 440, 515, 693, 837, 959, 979
HpyF10VI GCNNNNNNNGC 4 cut(s) 77, 86, 163, 1036
HpySE526I ACGT 1 cut(s) 523
Hsp92II CATG 8 cut(s) 308, 335, 398, 423, 832, 837, 935, 1039
HspAI GCGC 1 cut(s) 188
KpnI GGTACC 1 cut(s) 163
Ksp22I TGATCA 1 cut(s) 391
KspAI GTTAAC 1 cut(s) 648
Kzo9I GATC 7 cut(s) 219, 314, 368, 391, 416, 950, 1010
LmnI GCTCC 2 cut(s) 424, 880
Lsp1109I GCAGC 1 cut(s) 527
MabI ACCWGGT 1 cut(s) 274
MaeI CTAG 2 cut(s) 666, 906
MaeII ACGT 1 cut(s) 523
MaeIII GTNAC 3 cut(s) 794, 864, 1046
MalI GATC 7 cut(s) 221, 316, 370, 393, 418, 952, 1012
MboI GATC 7 cut(s) 219, 314, 368, 391, 416, 950, 1010
MboII GAAGA 9 cut(s) 154, 249, 457, 481, 526, 618, 692, 723, 837
MflI RGATCY 2 cut(s) 219, 1010
MhlI GDGCHC 3 cut(s) 202, 406, 877
MluCI AATT 3 cut(s) 296, 659, 745
MlyI GAGTC 1 cut(s) 587
MseI TTAA 2 cut(s) 92, 647
MspA1I CMGCKG 1 cut(s) 166
MspI CCGG 1 cut(s) 290
MspR9I CCNGG 5 cut(s) 276, 290, 319, 432, 1008
Mva1269I GAATGC 2 cut(s) 686, 979
MvaI CCWGG 4 cut(s) 276, 319, 432, 1008
MwoI GCNNNNNNNGC 4 cut(s) 77, 86, 163, 1036
NciI CCSGG 1 cut(s) 290
NdeII GATC 7 cut(s) 219, 314, 368, 391, 416, 950, 1010
NlaIII CATG 8 cut(s) 308, 335, 398, 423, 832, 837, 935, 1039
NlaIV GGNNCC 3 cut(s) 161, 215, 482
NmuCI GTSAC 1 cut(s) 864
NspI RCATGY 2 cut(s) 837, 1039
PaeI GCATGC 2 cut(s) 837, 1039
PaeR7I CTCGAG 1 cut(s) 201
PagI TCATGA 1 cut(s) 394
PceI AGGCCT 1 cut(s) 889
PctI GAATGC 2 cut(s) 686, 979
PfeI GAWTC 2 cut(s) 265, 944
PflFI GACNNNGTC 1 cut(s) 479
PflMI CCANNNNNTGG 1 cut(s) 1013
PfoI TCCNGGA 1 cut(s) 317
PkrI GCNGC 1 cut(s) 517
PleI GAGTC 1 cut(s) 587
PpsI GAGTC 1 cut(s) 587
PpuMI RGGWCCY 1 cut(s) 481
Psp124BI GAGCTC 2 cut(s) 202, 406
Psp5II RGGWCCY 1 cut(s) 481
Psp6I CCWGG 4 cut(s) 274, 317, 430, 1006
PspGI CCWGG 4 cut(s) 274, 317, 430, 1006
PspN4I GGNNCC 3 cut(s) 161, 215, 482
PspPI GGNCC 3 cut(s) 213, 278, 481
PspPPI RGGWCCY 1 cut(s) 481
PspXI VCTCGAGB 1 cut(s) 201
PstI CTGCAG 1 cut(s) 442
PstNI CAGNNNCTG 2 cut(s) 437, 1013
PsuI RGATCY 2 cut(s) 219, 1010
PsyI GACNNNGTC 1 cut(s) 479
RsaI GTAC 4 cut(s) 161, 325, 809, 923
RsaNI GTAC 4 cut(s) 160, 324, 808, 922
SacI GAGCTC 2 cut(s) 202, 406
SaqAI TTAA 2 cut(s) 92, 647
SatI GCNGC 1 cut(s) 516
Sau3AI GATC 7 cut(s) 219, 314, 368, 391, 416, 950, 1010
Sau96I GGNCC 3 cut(s) 213, 278, 481
SchI GAGTC 1 cut(s) 587
ScrFI CCNGG 5 cut(s) 276, 290, 319, 432, 1008
SduI GDGCHC 3 cut(s) 202, 406, 877
SexAI ACCWGGT 1 cut(s) 274
SfcI CTRYAG 2 cut(s) 438, 1041
Sfr274I CTCGAG 1 cut(s) 201
SinI GGWCC 3 cut(s) 213, 278, 481
SlaI CTCGAG 1 cut(s) 201
SmlI CTYRAG 3 cut(s) 38, 201, 364
SmoI CTYRAG 3 cut(s) 38, 201, 364
SphI GCATGC 2 cut(s) 837, 1039
Sse9I AATT 3 cut(s) 296, 659, 745
SseBI AGGCCT 1 cut(s) 889
SsiI CCGC 3 cut(s) 157, 166, 211
SspI AATATT 1 cut(s) 180
SspMI CTAG 2 cut(s) 666, 906
SstI GAGCTC 2 cut(s) 202, 406
StuI AGGCCT 1 cut(s) 889
StyD4I CCNGG 5 cut(s) 274, 288, 317, 430, 1006
TaaI ACNGT 1 cut(s) 714
TaiI ACGT 1 cut(s) 526
TaqI TCGA 5 cut(s) 202, 313, 486, 492, 788
TasI AATT 3 cut(s) 296, 659, 745
TatI WGTACW 1 cut(s) 323
TfiI GAWTC 2 cut(s) 265, 944
Tru1I TTAA 2 cut(s) 92, 647
Tru9I TTAA 2 cut(s) 92, 647
TscAI CASTG 1 cut(s) 447
TseFI GTSAC 1 cut(s) 864
TseI GCWGC 1 cut(s) 515
Tsp45I GTSAC 1 cut(s) 864
TspDTI ATGAA 3 cut(s) 330, 348, 920
TspGWI ACGGA 1 cut(s) 612
TspRI CASTG 1 cut(s) 447
Tth111I GACNNNGTC 1 cut(s) 479
Van91I CCANNNNNTGG 1 cut(s) 1013
VpaK11BI GGWCC 3 cut(s) 213, 278, 481
XapI RAATTY 2 cut(s) 296, 659
XbaI TCTAGA 1 cut(s) 665
XceI RCATGY 2 cut(s) 837, 1039
XhoI CTCGAG 1 cut(s) 201
XspI CTAG 2 cut(s) 666, 906
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.