Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0011559

Physical Location & Seq

Genomic Coordinates Forward (+)

14233526 .. 14236561

Gene Structure 3036 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G162500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1347 bp

ATGGAAGGAGAAGATATCACAACAAACAACAAAGAAGCTTTGAGCATTGAACAAGGCCAATTAAGGGGTGACCAAGATCAAGAATTTTCCCTCCCCTCTGCTCATACAATTGGCCATGATTCATGGCAACAAGTTGGGTTGATGCTGGTGACAAGCTTCAATTGTGGTTACATATTGAGCTTTTCAAATCTTATGTTGGTGCCTTTGGGATGGACATGGGGGATCATATGCCTGCTGGTTGTGGGGTTCTATACTGCCTATGCCAACTGGCTTTTGGCTGCTTTTCACTTCATCAATGGCCAAAGGTTCATCAGATACAGAGATCTCATGGGACTTTTGTTTGGTAGAGAAATGTATTACATCACATGGGTTTCCCAGTTCTTGACCCTTCTTCTTGGAAATATGGGTTTCATTCTACTTGGAGGAAGGGCACTCAAGGAGATTAACTCAGAATTCAGTGATTCTCCCCTGAGGCTCCAATACTTTATCGTTGTCACTGGAGCGACCTACTTCATCTATTCATTTCTAATTCCAACAATCTCTGCAATGAGAAGGTGGCTCGGACCCTCTACCGTTCTCACTTTCGCTTACATTGTCATACTCTTGGTGGTAGCAGTTAAAGATGGGAAAGCTAACACAAAGAGAGATTATGCAATCCATGGAAACAAAGCAGGCAGAGTGTTGAATGCCTTTGGTGCAATTTCAGCTATAATTGTGTGCAACACCTCCGGCCTGCTACTAGAGATACAGTCAACTCTGCGCAAGCCTGCAGTTTCAAATATGAGGAAAGCTTTATATCTGCAGTTTAGTGTGGGGCTGGTGTTCTACTATGGAGTCAGCATGGTGGGATACTGGGCTTATGGCTCAACTGTCTCTGAATACCTTCCTGGAGAGCTAAGCGGTCCTAAATCGGTTAAGGTCCTCATAAACGCCGCCGTTTTCCTGCAATCCATAGTCTCTCAACATATGTTTGCTGCACCAATTCATGAGACCCTTGATACCAAGTTCCTCAAACTTGAAACCGGCATGAACACGAAAGAAAACATGAAGAGGAGATTCTACATGCGAGCCCTTCTTTTCACGGTGAATTCATTTGTGACAGCAGCTTTTCCTTTCATGGGGAACTTTGTGAACTTGTTTGGATCATTCACACTTGTTCCTCTAACTTTCGTGTTCCCAAGCATGATTTTCATCAAGGTGAAAGGAAAGACAGCTAGACTAGAGAAGAATTTATGGCATTGGTTCAACATTGTAATTTTCTCTCTCCTTGCTGTTGTGACCACAATTTCTGCTGTTCGATTGATCGTCAACAATGTTCAGAAATATCATTTCTTTGCGGATACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Aa_trans

Protein Analysis

449

Amino Acids

50.5

Weight (kDa)

9.47

Isoelectric Point (pI)

30.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011559)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g06650 FvH4_5g06650 FvH4_5g06650 FvH4_5g06650
malus_domestica	MD06G1162100.v1.1
prunus_persica	Prupe.5G162500_v2.0.a1 Prupe.5G162500_v2.0.a1
pyrus_communis	pycom06g14490
rosa_chinensis	RchiOBHm_Chr7g0192031
rosa_laevigata	RLG00000004407
rosa_multiflora	Rmu_ssc0000421.1_g000036
rosa_roxburghii	Rroxscaffold_3G00263350
rosa_rugosa	Rorug06G0512500 Rorug06G0512600 Rorug06G0512600
rosa_samantha	Rh7AG122900 Rh7BG124500 Rh7CG127200 Rh7DG126000
rosa_wichuraiana	Rw7G010460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	761
AccB1I	GGYRCC	1 cut(s)	199
AciI	CCGC	3 cut(s)	900, 933, 1337
AclWI	GGATC	2 cut(s)	230, 1150
AcoI	YGGCCR	2 cut(s)	112, 298
AcsI	RAATTY	4 cut(s)	83, 452, 1087, 1228
AfiI	CCNNNNNNNGG	2 cut(s)	64, 1118
AgsI	TTSAA	7 cut(s)	50, 160, 186, 685, 777, 1019, 1246
AjnI	CCWGG	1 cut(s)	886
AluBI	AGCT	9 cut(s)	38, 156, 180, 632, 707, 791, 895, 1106, 1214
AluI	AGCT	9 cut(s)	38, 156, 180, 632, 707, 791, 895, 1106, 1214
Alw26I	GTCTC	3 cut(s)	877, 961, 983
AlwI	GGATC	2 cut(s)	230, 1150
AoxI	GGCC	4 cut(s)	55, 112, 298, 730
ApeKI	GCWGC	3 cut(s)	278, 974, 1103
ApoI	RAATTY	4 cut(s)	83, 452, 1087, 1228
Asp700I	GAANNNNTTC	1 cut(s)	882
AspLEI	GCGC	1 cut(s)	762
AspS9I	GGNCC	3 cut(s)	563, 902, 919
AsuHPI	GGTGA	4 cut(s)	80, 160, 1096, 1210
AvaII	GGWCC	3 cut(s)	563, 902, 919
AxyI	CCTNAGG	1 cut(s)	470
BaeGI	GKGCMC	1 cut(s)	433
BalI	TGGCCA	2 cut(s)	114, 300
BanI	GGYRCC	1 cut(s)	199
BanII	GRGCYC	1 cut(s)	1072
BbvI	GCAGC	3 cut(s)	265, 961, 1115
BccI	CCATC	2 cut(s)	204, 617
BceAI	ACGGC	1 cut(s)	920
BciT130I	CCWGG	1 cut(s)	888
BciVI	GTATCC	2 cut(s)	842, 1333
BcoDI	GTCTC	3 cut(s)	877, 961, 983
BfaI	CTAG	3 cut(s)	740, 1215, 1220
BfmI	CTRYAG	2 cut(s)	768, 800
BfuI	GTATCC	2 cut(s)	842, 1333
BglII	AGATCT	1 cut(s)	322
BisI	GCNGC	4 cut(s)	279, 933, 975, 1104
BlpI	GCTNAGC	1 cut(s)	896
BlsI	GCNGC	4 cut(s)	280, 934, 976, 1105
Bme1390I	CCNGG	1 cut(s)	888
Bme18I	GGWCC	3 cut(s)	563, 902, 919
BmgT120I	GGNCC	3 cut(s)	563, 902, 919
BmiI	GGNNCC	3 cut(s)	201, 476, 565
BmrFI	CCNGG	1 cut(s)	888
BmrI	ACTGGG	2 cut(s)	370, 862
BmsI	GCATC	1 cut(s)	132
BmuI	ACTGGG	2 cut(s)	370, 862
BplI	GAGNNNNNCTC	2 cut(s)	431, 463
BpmI	CTGGAG	2 cut(s)	519, 909
Bpu1102I	GCTNAGC	1 cut(s)	896
BpuEI	CTTGAG	1 cut(s)	419
BsaBI	GATNNNNATC	1 cut(s)	1190
BsaI	GGTCTC	1 cut(s)	983
BsaJI	CCNNGG	1 cut(s)	658
Bsc4I	CCNNNNNNNGG	2 cut(s)	64, 1118
Bse118I	RCCGGY	1 cut(s)	1022
Bse1I	ACTGG	4 cut(s)	272, 376, 502, 857
Bse21I	CCTNAGG	1 cut(s)	470
Bse3DI	GCAATG	1 cut(s)	552
Bse8I	GATNNNNATC	1 cut(s)	1190
BseBI	CCWGG	1 cut(s)	888
BseDI	CCNNGG	1 cut(s)	658
BseGI	GGATG	1 cut(s)	215
BseJI	GATNNNNATC	1 cut(s)	1190
BseLI	CCNNNNNNNGG	2 cut(s)	64, 1118
BseMI	GCAATG	1 cut(s)	552
BseMII	CTCAG	2 cut(s)	461, 462
BseNI	ACTGG	4 cut(s)	272, 376, 502, 857
BseRI	GAGGAG	1 cut(s)	1066
BseSI	GKGCMC	1 cut(s)	433
BseXI	GCAGC	3 cut(s)	265, 961, 1115
BsgI	GTGCAG	1 cut(s)	960
BshFI	GGCC	4 cut(s)	57, 114, 300, 732
BshNI	GGYRCC	1 cut(s)	199
BsiSI	CCGG	2 cut(s)	729, 1023
BslFI	GGGAC	1 cut(s)	345
BslI	CCNNNNNNNGG	2 cut(s)	64, 1118
BsmAI	GTCTC	3 cut(s)	877, 961, 983
BsmFI	GGGAC	1 cut(s)	345
BsmI	GAATGC	1 cut(s)	691
BsnI	GGCC	4 cut(s)	57, 114, 300, 732
Bso31I	GGTCTC	1 cut(s)	983
Bsp1286I	GDGCHC	2 cut(s)	433, 1072
Bsp143I	GATC	5 cut(s)	76, 222, 322, 1142, 1302
Bsp1720I	GCTNAGC	1 cut(s)	896
Bsp19I	CCATGG	1 cut(s)	658
BspACI	CCGC	3 cut(s)	900, 933, 1337
BspANI	GGCC	4 cut(s)	57, 114, 300, 732
BspCNI	CTCAG	2 cut(s)	461, 462
BspHI	TCATGA	1 cut(s)	985
BspLI	GGNNCC	3 cut(s)	201, 476, 565
BspMAI	CTGCAG	2 cut(s)	772, 804
BspPI	GGATC	2 cut(s)	230, 1150
BspT107I	GGYRCC	1 cut(s)	199
BspTNI	GGTCTC	1 cut(s)	983
BsrDI	GCAATG	1 cut(s)	552
BsrFI	RCCGGY	1 cut(s)	1022
BsrI	ACTGG	4 cut(s)	272, 376, 502, 857
BssAI	RCCGGY	1 cut(s)	1022
BssECI	CCNNGG	1 cut(s)	658
BssMI	GATC	5 cut(s)	76, 222, 322, 1142, 1302
BssT1I	CCWWGG	1 cut(s)	658
Bst2UI	CCWGG	1 cut(s)	888
Bst4CI	ACNGT	4 cut(s)	574, 750, 871, 1084
Bst6I	CTCTTC	1 cut(s)	1043
BstC8I	GCNNGC	6 cut(s)	233, 673, 734, 764, 768, 1068
BstDEI	CTNAG	3 cut(s)	448, 470, 896
BstDSI	CCRYGG	1 cut(s)	658
BstEII	GGTNACC	1 cut(s)	68
BstF5I	GGATG	1 cut(s)	215
BstHHI	GCGC	1 cut(s)	762
BstKTI	GATC	5 cut(s)	79, 225, 325, 1145, 1305
BstMAI	GTCTC	3 cut(s)	877, 961, 983
BstMBI	GATC	5 cut(s)	76, 222, 322, 1142, 1302
BstMWI	GCNNNNNNNGC	2 cut(s)	695, 704
BstNI	CCWGG	1 cut(s)	888
BstNSI	RCATGY	1 cut(s)	1066
BstPI	GGTNACC	1 cut(s)	68
BstSCI	CCNGG	1 cut(s)	886
BstSFI	CTRYAG	2 cut(s)	768, 800
BstSLI	GKGCMC	1 cut(s)	433
BstV1I	GCAGC	3 cut(s)	265, 961, 1115
BstX2I	RGATCY	1 cut(s)	322
BstYI	RGATCY	1 cut(s)	322
Bsu36I	CCTNAGG	1 cut(s)	470
BsuI	GTATCC	2 cut(s)	842, 1333
BsuRI	GGCC	4 cut(s)	57, 114, 300, 732
BtgI	CCRYGG	1 cut(s)	658
BtsCI	GGATG	1 cut(s)	215
BtsIMutI	CAGTG	2 cut(s)	463, 495
Cac8I	GCNNGC	6 cut(s)	233, 673, 734, 764, 768, 1068
CciI	TCATGA	1 cut(s)	985
CfoI	GCGC	1 cut(s)	762
Cfr10I	RCCGGY	1 cut(s)	1022
Cfr13I	GGNCC	3 cut(s)	563, 902, 919
DdeI	CTNAG	3 cut(s)	448, 470, 896
DpnI	GATC	5 cut(s)	78, 224, 324, 1144, 1304
DpnII	GATC	5 cut(s)	76, 222, 322, 1142, 1302
EaeI	YGGCCR	2 cut(s)	112, 298
Eam1104I	CTCTTC	1 cut(s)	1043
EarI	CTCTTC	1 cut(s)	1043
Eco130I	CCWWGG	1 cut(s)	658
Eco24I	GRGCYC	1 cut(s)	1072
Eco31I	GGTCTC	1 cut(s)	983
Eco32I	GATATC	1 cut(s)	16
Eco47I	GGWCC	3 cut(s)	563, 902, 919
Eco81I	CCTNAGG	1 cut(s)	470
Eco91I	GGTNACC	1 cut(s)	68
EcoO109I	RGGNCCY	1 cut(s)	919
EcoO65I	GGTNACC	1 cut(s)	68
EcoRI	GAATTC	2 cut(s)	452, 1087
EcoRII	CCWGG	1 cut(s)	886
EcoRV	GATATC	1 cut(s)	16
EcoT14I	CCWWGG	1 cut(s)	658
EcoT38I	GRGCYC	1 cut(s)	1072
ErhI	CCWWGG	1 cut(s)	658
FaqI	GGGAC	1 cut(s)	345
FauNDI	CATATG	2 cut(s)	227, 966
Fnu4HI	GCNGC	4 cut(s)	279, 933, 975, 1104
FokI	GGATG	1 cut(s)	222
FriOI	GRGCYC	1 cut(s)	1072
Fsp4HI	GCNGC	4 cut(s)	279, 933, 975, 1104
FspBI	CTAG	3 cut(s)	740, 1215, 1220
FspI	TGCGCA	1 cut(s)	761
GlaI	GCGC	1 cut(s)	761
GluI	GCNGC	4 cut(s)	279, 933, 975, 1104
GsuI	CTGGAG	2 cut(s)	519, 909
HaeIII	GGCC	4 cut(s)	57, 114, 300, 732
HapII	CCGG	2 cut(s)	729, 1023
HhaI	GCGC	1 cut(s)	762
Hin6I	GCGC	1 cut(s)	760
HinP1I	GCGC	1 cut(s)	760
HincII	GTYRAC	2 cut(s)	753, 1309
HindII	GTYRAC	2 cut(s)	753, 1309
HindIII	AAGCTT	3 cut(s)	36, 154, 789
HinfI	GANTC	4 cut(s)	119, 461, 834, 1056
HpaII	CCGG	2 cut(s)	729, 1023
HphI	GGTGA	4 cut(s)	80, 160, 1096, 1210
Hpy166II	GTNNAC	3 cut(s)	753, 1132, 1309
Hpy188I	TCNGA	5 cut(s)	314, 451, 563, 877, 1320
Hpy188III	TCNNGA	3 cut(s)	80, 382, 986
Hpy8I	GTNNAC	3 cut(s)	753, 1132, 1309
HpyAV	CCTTC	5 cut(s)	398, 420, 546, 893, 1082
HpyCH4III	ACNGT	4 cut(s)	574, 750, 871, 1084
HpyCH4V	TGCA	8 cut(s)	545, 653, 698, 720, 770, 802, 946, 977
HpyF10VI	GCNNNNNNNGC	2 cut(s)	695, 704
HpyF3I	CTNAG	3 cut(s)	448, 470, 896
HspAI	GCGC	1 cut(s)	760
Kzo9I	GATC	5 cut(s)	76, 222, 322, 1142, 1302
LmnI	GCTCC	2 cut(s)	480, 500
Lsp1109I	GCAGC	3 cut(s)	265, 961, 1115
LweI	GCATC	1 cut(s)	132
MaeI	CTAG	3 cut(s)	740, 1215, 1220
MaeIII	GTNAC	6 cut(s)	68, 148, 167, 493, 1096, 1276
MalI	GATC	5 cut(s)	78, 224, 324, 1144, 1304
MboI	GATC	5 cut(s)	76, 222, 322, 1142, 1302
MboII	GAAGA	4 cut(s)	23, 383, 1060, 1237
MfeI	CAATTG	2 cut(s)	108, 160
MflI	RGATCY	1 cut(s)	322
MhlI	GDGCHC	2 cut(s)	433, 1072
MlsI	TGGCCA	2 cut(s)	114, 300
MluNI	TGGCCA	2 cut(s)	114, 300
MlyI	GAGTC	1 cut(s)	843
MmeI	TCCRAC	1 cut(s)	557
Mox20I	TGGCCA	2 cut(s)	114, 300
MroXI	GAANNNNTTC	1 cut(s)	882
MscI	TGGCCA	2 cut(s)	114, 300
MseI	TTAA	4 cut(s)	62, 444, 618, 915
MslI	CAYNNNNRTG	1 cut(s)	1196
Msp20I	TGGCCA	2 cut(s)	114, 300
MspI	CCGG	2 cut(s)	729, 1023
MspR9I	CCNGG	1 cut(s)	888
MunI	CAATTG	2 cut(s)	108, 160
Mva1269I	GAATGC	1 cut(s)	691
MvaI	CCWGG	1 cut(s)	888
MwoI	GCNNNNNNNGC	2 cut(s)	695, 704
NcoI	CCATGG	1 cut(s)	658
NdeI	CATATG	2 cut(s)	227, 966
NdeII	GATC	5 cut(s)	76, 222, 322, 1142, 1302
NlaIV	GGNNCC	3 cut(s)	201, 476, 565
NmuCI	GTSAC	5 cut(s)	68, 148, 493, 1096, 1276
NsbI	TGCGCA	1 cut(s)	761
NspI	RCATGY	1 cut(s)	1066
PagI	TCATGA	1 cut(s)	985
PctI	GAATGC	1 cut(s)	691
PdmI	GAANNNNTTC	1 cut(s)	882
PfeI	GAWTC	3 cut(s)	119, 461, 1056
PfoI	TCCNGGA	1 cut(s)	886
PkrI	GCNGC	4 cut(s)	280, 934, 976, 1105
PleI	GAGTC	1 cut(s)	842
PpsI	GAGTC	1 cut(s)	842
PpuMI	RGGWCCY	1 cut(s)	919
Psp5II	RGGWCCY	1 cut(s)	919
Psp6I	CCWGG	1 cut(s)	886
PspEI	GGTNACC	1 cut(s)	68
PspGI	CCWGG	1 cut(s)	886
PspN4I	GGNNCC	3 cut(s)	201, 476, 565
PspPI	GGNCC	3 cut(s)	563, 902, 919
PspPPI	RGGWCCY	1 cut(s)	919
PstI	CTGCAG	2 cut(s)	772, 804
PsuI	RGATCY	1 cut(s)	322
RseI	CAYNNNNRTG	1 cut(s)	1196
SaqAI	TTAA	4 cut(s)	62, 444, 618, 915
SatI	GCNGC	4 cut(s)	279, 933, 975, 1104
Sau3AI	GATC	5 cut(s)	76, 222, 322, 1142, 1302
Sau96I	GGNCC	3 cut(s)	563, 902, 919
SchI	GAGTC	1 cut(s)	843
ScrFI	CCNGG	1 cut(s)	888
SduI	GDGCHC	2 cut(s)	433, 1072
SfaNI	GCATC	1 cut(s)	132
SfcI	CTRYAG	2 cut(s)	768, 800
SinI	GGWCC	3 cut(s)	563, 902, 919
SmiMI	CAYNNNNRTG	1 cut(s)	1196
SmlI	CTYRAG	1 cut(s)	434
SmoI	CTYRAG	1 cut(s)	434
SsiI	CCGC	3 cut(s)	900, 933, 1337
SspMI	CTAG	3 cut(s)	740, 1215, 1220
StyD4I	CCNGG	1 cut(s)	886
StyI	CCWWGG	1 cut(s)	658
TaaI	ACNGT	4 cut(s)	574, 750, 871, 1084
TaqI	TCGA	1 cut(s)	1297
TauI	GCSGC	1 cut(s)	935
TfiI	GAWTC	3 cut(s)	119, 461, 1056
Tru1I	TTAA	4 cut(s)	62, 444, 618, 915
Tru9I	TTAA	4 cut(s)	62, 444, 618, 915
TscAI	CASTG	2 cut(s)	463, 502
TseFI	GTSAC	5 cut(s)	68, 148, 493, 1096, 1276
TseI	GCWGC	3 cut(s)	278, 974, 1103
Tsp45I	GTSAC	5 cut(s)	68, 148, 493, 1096, 1276
TspRI	CASTG	2 cut(s)	463, 502
VpaK11BI	GGWCC	3 cut(s)	563, 902, 919
XapI	RAATTY	4 cut(s)	83, 452, 1087, 1228
XceI	RCATGY	1 cut(s)	1066
XcmI	CCANNNNNNNNNTGG	1 cut(s)	271
XmnI	GAANNNNTTC	1 cut(s)	882
XspI	CTAG	3 cut(s)	740, 1215, 1220

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.