Rh7DG126000

Proline transporter 2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0011559
Physical Location & Seq
Forward (+)
10640424 .. 10643062
2639 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG126000.1

Sequence Viewer

Length: 999 bp
ATGTATTACATAACATGGGTTTTACAGTTCTCGACCCTACTTCTTGGAAATATGGGTTTCATTCTTCTAGGGGGTAGAGCACTCAAGGAGATTAACTCAGAACTCAGTGATTCTCCACTGAGGCTCCAATACTTTATTGTCATCACCGGAGTGACCTATTTCATATTCGCCTTTTTCATTCCAACAATGTCTAAAATGAGATTTTGGCTTGGACCCTCTACCATTGTCACTTTTGCTTACATTGTCATACTCTTGGTGGTACTAGTTAAAGATGGGAAAACAAAGACGACAGAGCGAAATTATGAAATCCATGGAAACAAAGCTGAGAGAGTGTTCAATGCCTTCAATGCAGTTTCAGCTATTATTGTCTGCAACACCTCAGGCTTGCTACTAGAAATACAGTCAACCCTGCAGAAGCCAGCAGTAACAAATATGAGGAAAGCTTTATATCTGCAGTATAGTGCAGGGCTCTTATTTTACTATGGAGTCAGCATAGTAGGATACTGGGCATATGGCGCAACCGTATCTGAATACCTTCCTGAAGAGCTAAGTGGTCCTAAATCGGTTAAGGTCCTCATAAACGCTGCCGTGTTTCTACAATCCATAGTCTCACAACATATGTTTGTTGCACCAATTCATGAGGCCCTTGATACCAAGTTCCTTAAACTTGATGAGATCATGCACTGGAAATATAACTTCAAGCGGAGGTTCTACCTCCGAGCCCTTCTCTTCATGGGAAATACATTTGTGACAGCAGCTATTCCTTTCATGGGGGACTTTGTGAACTTATTTGGATCGTTTACACTCGTTCCTCTAACTTTTGTTTTTCCAAGCATGATTTTCATTAAGGTGAAGGGAAAGACAGCTAGACTGGAGAAAAATTTGTGGCATTGGTTCAACATTGTTATTTTTTCTCTGCTTGCGATTATAACTACGATTTCTGCAGTTCGTTTGATTGTCAACAATGTTAAGGAATACAATTTCTTTGCAGATACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aa_trans

Protein Analysis

332

Amino Acids

37.89

Weight (kDa)

9.55

Isoelectric Point (pI)

33.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aa_trans PF01490 1 - 315 4.9e-45 Transmembrane amino acid transporter protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 929
AciI CCGC 1 cut(s) 703
AclWI GGATC 1 cut(s) 802
AcsI RAATTY 1 cut(s) 880
AcuI CTGAAG 1 cut(s) 561
AfaI GTAC 1 cut(s) 261
AfiI CCNNNNNNNGG 1 cut(s) 770
AgsI TTSAA 4 cut(s) 337, 346, 700, 898
AhlI ACTAGT 1 cut(s) 262
AleI CACNNNNGTG 1 cut(s) 149
AluBI AGCT 6 cut(s) 323, 359, 443, 547, 758, 866
AluI AGCT 6 cut(s) 323, 359, 443, 547, 758, 866
Alw21I GWGCWC 1 cut(s) 82
Alw26I GTCTC 1 cut(s) 613
AlwI GGATC 1 cut(s) 802
AoxI GGCC 1 cut(s) 642
ApeKI GCWGC 2 cut(s) 584, 755
ApoI RAATTY 1 cut(s) 880
Asp700I GAANNNNTTC 1 cut(s) 534
AspLEI GCGC 1 cut(s) 518
AspS9I GGNCC 4 cut(s) 212, 554, 571, 643
AsuHPI GGTGA 2 cut(s) 136, 862
AvaII GGWCC 3 cut(s) 212, 554, 571
AxyI CCTNAGG 1 cut(s) 379
BanII GRGCYC 2 cut(s) 471, 724
Bbv12I GWGCWC 1 cut(s) 82
BbvI GCAGC 2 cut(s) 571, 767
BccI CCATC 1 cut(s) 266
BceAI ACGGC 1 cut(s) 572
BciVI GTATCC 1 cut(s) 494
BcoDI GTCTC 1 cut(s) 613
BcuI ACTAGT 1 cut(s) 262
BfaI CTAG 4 cut(s) 68, 263, 392, 867
BfmI CTRYAG 3 cut(s) 410, 452, 942
BfuI GTATCC 1 cut(s) 494
BisI GCNGC 2 cut(s) 585, 756
BlsI GCNGC 2 cut(s) 586, 757
Bme18I GGWCC 3 cut(s) 212, 554, 571
BmgT120I GGNCC 4 cut(s) 212, 554, 571, 643
BmiI GGNNCC 2 cut(s) 125, 214
BmrI ACTGGG 1 cut(s) 514
BmuI ACTGGG 1 cut(s) 514
BplI GAGNNNNNCTC 4 cut(s) 80, 112, 711, 743
BpmI CTGGAG 1 cut(s) 893
BpuEI CTTGAG 1 cut(s) 68
BsaJI CCNNGG 1 cut(s) 310
BsaWI WCCGGW 1 cut(s) 146
BsaXI ACNNNNNCTCC 2 cut(s) 108, 138
Bsc4I CCNNNNNNNGG 1 cut(s) 770
Bse1I ACTGG 3 cut(s) 509, 689, 876
Bse21I CCTNAGG 1 cut(s) 379
BseDI CCNNGG 1 cut(s) 310
BseLI CCNNNNNNNGG 1 cut(s) 770
BseMII CTCAG 5 cut(s) 110, 111, 118, 315, 393
BseNI ACTGG 3 cut(s) 509, 689, 876
BseXI GCAGC 2 cut(s) 571, 767
BsgI GTGCAG 1 cut(s) 483
BshFI GGCC 1 cut(s) 644
BsiHKAI GWGCWC 1 cut(s) 82
BsiSI CCGG 1 cut(s) 147
BslFI GGGAC 1 cut(s) 788
BslI CCNNNNNNNGG 1 cut(s) 770
BsmAI GTCTC 1 cut(s) 613
BsmFI GGGAC 1 cut(s) 788
BsnI GGCC 1 cut(s) 644
Bsp1286I GDGCHC 3 cut(s) 82, 471, 724
Bsp143I GATC 2 cut(s) 675, 794
Bsp19I CCATGG 1 cut(s) 310
BspACI CCGC 1 cut(s) 703
BspANI GGCC 1 cut(s) 644
BspCNI CTCAG 5 cut(s) 110, 111, 117, 316, 392
BspHI TCATGA 1 cut(s) 637
BspLI GGNNCC 2 cut(s) 125, 214
BspMAI CTGCAG 3 cut(s) 414, 456, 946
BspPI GGATC 1 cut(s) 802
BspQI GCTCTTC 1 cut(s) 537
BsrI ACTGG 3 cut(s) 509, 689, 876
BssECI CCNNGG 1 cut(s) 310
BssMI GATC 2 cut(s) 675, 794
BssT1I CCWWGG 1 cut(s) 310
Bst4CI ACNGT 3 cut(s) 27, 402, 523
Bst6I CTCTTC 2 cut(s) 537, 734
BstC8I GCNNGC 3 cut(s) 386, 420, 921
BstDEI CTNAG 6 cut(s) 97, 104, 119, 324, 379, 548
BstDSI CCRYGG 1 cut(s) 310
BstHHI GCGC 1 cut(s) 518
BstKTI GATC 2 cut(s) 678, 797
BstMAI GTCTC 1 cut(s) 613
BstMBI GATC 2 cut(s) 675, 794
BstMWI GCNNNNNNNGC 3 cut(s) 347, 356, 515
BstSFI CTRYAG 3 cut(s) 410, 452, 942
BstV1I GCAGC 2 cut(s) 571, 767
Bsu36I CCTNAGG 1 cut(s) 379
BsuI GTATCC 1 cut(s) 494
BsuRI GGCC 1 cut(s) 644
BtgI CCRYGG 1 cut(s) 310
BtsIMutI CAGTG 3 cut(s) 112, 116, 682
Cac8I GCNNGC 3 cut(s) 386, 420, 921
CciI TCATGA 1 cut(s) 637
CfoI GCGC 1 cut(s) 518
Cfr13I GGNCC 4 cut(s) 212, 554, 571, 643
Csp6I GTAC 1 cut(s) 260
CviAII CATG 8 cut(s) 15, 311, 638, 679, 733, 769, 835, 996
CviQI GTAC 1 cut(s) 260
DdeI CTNAG 6 cut(s) 97, 104, 119, 324, 379, 548
DpnI GATC 2 cut(s) 677, 796
DpnII GATC 2 cut(s) 675, 794
Eam1104I CTCTTC 2 cut(s) 537, 734
EarI CTCTTC 2 cut(s) 537, 734
Eco130I CCWWGG 1 cut(s) 310
Eco24I GRGCYC 2 cut(s) 471, 724
Eco47I GGWCC 3 cut(s) 212, 554, 571
Eco57I CTGAAG 1 cut(s) 561
Eco81I CCTNAGG 1 cut(s) 379
EcoO109I RGGNCCY 2 cut(s) 571, 643
EcoT14I CCWWGG 1 cut(s) 310
EcoT38I GRGCYC 2 cut(s) 471, 724
ErhI CCWWGG 1 cut(s) 310
FaeI CATG 8 cut(s) 18, 314, 641, 682, 736, 772, 838, 999
FaqI GGGAC 1 cut(s) 788
FatI CATG 8 cut(s) 14, 310, 637, 678, 732, 768, 834, 995
FauNDI CATATG 2 cut(s) 511, 618
Fnu4HI GCNGC 2 cut(s) 585, 756
FriOI GRGCYC 2 cut(s) 471, 724
Fsp4HI GCNGC 2 cut(s) 585, 756
FspBI CTAG 4 cut(s) 68, 263, 392, 867
GlaI GCGC 1 cut(s) 517
GluI GCNGC 2 cut(s) 585, 756
GsuI CTGGAG 1 cut(s) 893
HaeIII GGCC 1 cut(s) 644
HapII CCGG 1 cut(s) 147
HhaI GCGC 1 cut(s) 518
Hin1II CATG 8 cut(s) 18, 314, 641, 682, 736, 772, 838, 999
Hin6I GCGC 1 cut(s) 516
HinP1I GCGC 1 cut(s) 516
HincII GTYRAC 2 cut(s) 405, 961
HindII GTYRAC 2 cut(s) 405, 961
HindIII AAGCTT 1 cut(s) 441
HinfI GANTC 2 cut(s) 110, 486
HpaII CCGG 1 cut(s) 147
HphI GGTGA 2 cut(s) 136, 862
Hpy166II GTNNAC 4 cut(s) 405, 784, 801, 961
Hpy188I TCNGA 3 cut(s) 100, 529, 719
Hpy188III TCNNGA 3 cut(s) 31, 539, 638
Hpy8I GTNNAC 4 cut(s) 405, 784, 801, 961
HpyAV CCTTC 4 cut(s) 352, 545, 734, 847
HpyCH4III ACNGT 3 cut(s) 27, 402, 523
HpyCH4V TGCA 9 cut(s) 350, 372, 412, 454, 464, 629, 682, 944, 989
HpyF10VI GCNNNNNNNGC 3 cut(s) 347, 356, 515
HpyF3I CTNAG 6 cut(s) 97, 104, 119, 324, 379, 548
Hsp92II CATG 8 cut(s) 18, 314, 641, 682, 736, 772, 838, 999
HspAI GCGC 1 cut(s) 516
Kzo9I GATC 2 cut(s) 675, 794
LguI GCTCTTC 1 cut(s) 537
LmnI GCTCC 1 cut(s) 129
LpnPI CCDG 9 cut(s) 160, 366, 422, 432, 450, 490, 552, 670, 857
Lsp1109I GCAGC 2 cut(s) 571, 767
MaeI CTAG 4 cut(s) 68, 263, 392, 867
MaeIII GTNAC 4 cut(s) 151, 226, 424, 748
MalI GATC 2 cut(s) 677, 796
MboI GATC 2 cut(s) 675, 794
MboII GAAGA 3 cut(s) 56, 554, 721
MhlI GDGCHC 3 cut(s) 82, 471, 724
MluCI AATT 4 cut(s) 298, 633, 880, 979
MlyI GAGTC 1 cut(s) 495
MmeI TCCRAC 1 cut(s) 206
MnlI CCTC 9 cut(s) 114, 226, 388, 429, 584, 634, 699, 725, 822
MroXI GAANNNNTTC 1 cut(s) 534
MseI TTAA 6 cut(s) 93, 267, 567, 663, 846, 969
MslI CAYNNNNRTG 2 cut(s) 149, 848
MspI CCGG 1 cut(s) 147
MwoI GCNNNNNNNGC 3 cut(s) 347, 356, 515
NcoI CCATGG 1 cut(s) 310
NdeI CATATG 2 cut(s) 511, 618
NdeII GATC 2 cut(s) 675, 794
NlaIII CATG 8 cut(s) 18, 314, 641, 682, 736, 772, 838, 999
NlaIV GGNNCC 2 cut(s) 125, 214
NmuCI GTSAC 3 cut(s) 151, 226, 748
OliI CACNNNNGTG 1 cut(s) 149
PagI TCATGA 1 cut(s) 637
PciSI GCTCTTC 1 cut(s) 537
PdmI GAANNNNTTC 1 cut(s) 534
PfeI GAWTC 1 cut(s) 110
PkrI GCNGC 2 cut(s) 586, 757
PleI GAGTC 1 cut(s) 494
PpsI GAGTC 1 cut(s) 494
PpuMI RGGWCCY 1 cut(s) 571
PsiI TTATAA 1 cut(s) 929
Psp5II RGGWCCY 1 cut(s) 571
PspN4I GGNNCC 2 cut(s) 125, 214
PspPI GGNCC 4 cut(s) 212, 554, 571, 643
PspPPI RGGWCCY 1 cut(s) 571
PstI CTGCAG 3 cut(s) 414, 456, 946
RsaI GTAC 1 cut(s) 261
RsaNI GTAC 1 cut(s) 260
RseI CAYNNNNRTG 2 cut(s) 149, 848
SapI GCTCTTC 1 cut(s) 537
SaqAI TTAA 6 cut(s) 93, 267, 567, 663, 846, 969
SatI GCNGC 2 cut(s) 585, 756
Sau3AI GATC 2 cut(s) 675, 794
Sau96I GGNCC 4 cut(s) 212, 554, 571, 643
SchI GAGTC 1 cut(s) 495
SduI GDGCHC 3 cut(s) 82, 471, 724
SfcI CTRYAG 3 cut(s) 410, 452, 942
SinI GGWCC 3 cut(s) 212, 554, 571
SmiMI CAYNNNNRTG 2 cut(s) 149, 848
SmlI CTYRAG 1 cut(s) 83
SmoI CTYRAG 1 cut(s) 83
SpeI ACTAGT 1 cut(s) 262
Sse9I AATT 4 cut(s) 298, 633, 880, 979
SsiI CCGC 1 cut(s) 703
SspMI CTAG 4 cut(s) 68, 263, 392, 867
StyI CCWWGG 1 cut(s) 310
TaaI ACNGT 3 cut(s) 27, 402, 523
TaqI TCGA 1 cut(s) 32
TasI AATT 4 cut(s) 298, 633, 880, 979
TfiI GAWTC 1 cut(s) 110
Tru1I TTAA 6 cut(s) 93, 267, 567, 663, 846, 969
Tru9I TTAA 6 cut(s) 93, 267, 567, 663, 846, 969
TscAI CASTG 3 cut(s) 112, 123, 689
TseFI GTSAC 3 cut(s) 151, 226, 748
TseI GCWGC 2 cut(s) 584, 755
Tsp45I GTSAC 3 cut(s) 151, 226, 748
TspDTI ATGAA 8 cut(s) 49, 151, 166, 318, 626, 721, 757, 832
TspRI CASTG 3 cut(s) 112, 123, 689
VpaK11BI GGWCC 3 cut(s) 212, 554, 571
XapI RAATTY 1 cut(s) 880
XmnI GAANNNNTTC 1 cut(s) 534
XspI CTAG 4 cut(s) 68, 263, 392, 867
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.